Rh1CG359100

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010231
Physical Location & Seq
Reverse (-)
63271932 .. 63274517
2586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG359100.1

Sequence Viewer

Length: 1023 bp
ATGTCAAAACCCTCATCTCGAATCTTCCAAGGTCTGCTCCGATTCCACCGCCACCAAATCTCTAAGCCTTCAACTCCGCCCACCACTTTCCGGCGGACCTACCACCACTCCAATGGCCCTCTCCCCCGATTCCCCCCCGCCCCCCCAAAACCCCTCGGCAGCTCCTCCTTCCGGCCCGGCGGCGTCGGCCTGAGATTCTTCTCCTTCGACGCCGGCAATGCCAAGAAGGTGTTCGAGAAGCCGCTGGCGGCGGCGGCGTCGACTTTCTCGCGGTACCAGGAGGCGCTAGGGTTGCAGGTTGAGGCGTTCTGGAAGAGGAACAATCTGGTGCTGGTGGGAGCTGGGGGAGTTGTGGTGTGTGCTCTGCTCTGGAAGATCATGTTTGGGATTGCTAGCACGTTTGTGCACCTCTCTGAGGGAATGGCCAAGTATGGCTTTTTAGCTCTGTCTTCTGCCATGGTTGCTTTCGCCGGCCTTTATCTGCGGGCAAGGTTCACAATAAATCCTGATAAAGTATATAGGATTGCCATGACAAAGCTAAATACATCTGCTGGGATTCTTGAGGTCATGGGTGCCCCTCTAACAGGATCTGATCTAAGAGCCTATATAATGTCCGGAGGTGGGTTTCAACTGAAAAAATTCAAGCCAACTCTCAGGAGCAAGCGGTGCTTCCTCATTTTCCCAATACGAGGTTCCGAAAGAAGAGGTCTGGTCAATGTTGAAGTAAAGAAGAAGAAAGGCCAGTATGATATGAAGCTATTGGCAGTTGACATTCCCATGGCATCGGGACCTGATCAACGGTTATTCCTGATTGGGGATGAAGAAGAATACAAAGTTGGTGGTGGACTAATATCTGAGCTGAGAGATCCTGTTGTGAAAGCAATGGCTGCAGAGAAGATATTTGATAATCTTGATCAGATTGAAGACGAGGAGGATGCTGAAAAAGAACTTCTGGAGGCAGAAAGAAAGCATCGTGAAGAAATTGAGAAGCTTGAAAAAGATGGGAAAGATGGGACACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

37.75

Weight (kDa)

9.66

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
Acc65I GGTACC 1 cut(s) 273
AccB1I GGYRCC 2 cut(s) 273, 572
AccI GTMKAC 1 cut(s) 260
AccII CGCG 1 cut(s) 271
AccIII TCCGGA 1 cut(s) 614
AclWI GGATC 2 cut(s) 595, 860
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 1 cut(s) 638
AcyI GRCGYC 3 cut(s) 183, 210, 257
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 7 cut(s) 90, 171, 415, 584, 621, 689, 814
AgsI TTSAA 6 cut(s) 72, 629, 643, 722, 923, 995
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 6 cut(s) 215, 247, 676, 708, 819, 851
AleI CACNNNNGTG 1 cut(s) 401
AluBI AGCT 7 cut(s) 162, 341, 443, 538, 757, 859, 991
AluI AGCT 7 cut(s) 162, 341, 443, 538, 757, 859, 991
Alw21I GWGCWC 2 cut(s) 364, 408
Alw44I GTGCAC 1 cut(s) 404
AlwI GGATC 2 cut(s) 595, 860
AlwNI CAGNNNCTG 1 cut(s) 590
Aor13HI TCCGGA 1 cut(s) 614
AoxI GGCC 6 cut(s) 115, 173, 187, 423, 472, 739
ApaLI GTGCAC 1 cut(s) 404
ApeKI GCWGC 2 cut(s) 159, 887
ApoI RAATTY 1 cut(s) 638
Asp700I GAANNNNTTC 2 cut(s) 230, 638
Asp718I GGTACC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 4 cut(s) 96, 116, 174, 788
AsuC2I CCSGG 1 cut(s) 177
AsuNHI GCTAGC 1 cut(s) 392
AvaII GGWCC 2 cut(s) 96, 788
BaeGI GKGCMC 2 cut(s) 408, 577
BalI TGGCCA 1 cut(s) 425
BanI GGYRCC 2 cut(s) 273, 572
BbsI GAAGAC 2 cut(s) 441, 930
Bbv12I GWGCWC 2 cut(s) 364, 408
BbvI GCAGC 2 cut(s) 171, 874
BccI CCATC 2 cut(s) 995, 1004
BcgI CGANNNNNNTGC 2 cut(s) 917, 951
BciT130I CCWGG 1 cut(s) 278
BclI TGATCA 2 cut(s) 793, 913
BcnI CCSGG 1 cut(s) 177
BfaI CTAG 2 cut(s) 287, 393
BfmI CTRYAG 1 cut(s) 888
BfoI RGCGCY 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 7 cut(s) 160, 181, 242, 249, 252, 255, 888
BlsI GCNGC 7 cut(s) 161, 182, 243, 250, 253, 256, 889
Bme1390I CCNGG 2 cut(s) 177, 278
Bme18I GGWCC 2 cut(s) 96, 788
BmgT120I GGNCC 4 cut(s) 96, 116, 174, 788
BmiI GGNNCC 4 cut(s) 275, 574, 694, 789
BmrFI CCNGG 2 cut(s) 177, 278
BmsI GCATC 3 cut(s) 791, 925, 979
BmtI GCTAGC 1 cut(s) 396
BpiI GAAGAC 2 cut(s) 441, 930
BpmI CTGGAG 1 cut(s) 974
BpuEI CTTGAG 1 cut(s) 581
BpuMI CCSGG 1 cut(s) 177
BsaHI GRCGYC 3 cut(s) 183, 210, 257
BsaJI CCNNGG 4 cut(s) 28, 154, 456, 777
BsaWI WCCGGW 1 cut(s) 614
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 339, 369
Bsc4I CCNNNNNNNGG 7 cut(s) 90, 171, 415, 584, 621, 689, 814
Bse118I RCCGGY 2 cut(s) 212, 470
Bse1I ACTGG 1 cut(s) 742
Bse3DI GCAATG 2 cut(s) 223, 888
BseAI TCCGGA 1 cut(s) 614
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 4 cut(s) 28, 154, 456, 777
BseGI GGATG 2 cut(s) 823, 940
BseLI CCNNNNNNNGG 7 cut(s) 90, 171, 415, 584, 621, 689, 814
BseMI GCAATG 2 cut(s) 223, 888
BseMII CTCAG 5 cut(s) 182, 405, 667, 846, 851
BseNI ACTGG 1 cut(s) 742
BseRI GAGGAG 2 cut(s) 154, 944
BseSI GKGCMC 2 cut(s) 408, 577
BseXI GCAGC 2 cut(s) 171, 874
BseYI CCCAGC 2 cut(s) 341, 551
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 6 cut(s) 117, 175, 189, 425, 474, 741
BshNI GGYRCC 2 cut(s) 273, 572
BsiHKAI GWGCWC 2 cut(s) 364, 408
BsiSI CCGG 6 cut(s) 91, 172, 177, 213, 471, 615
BslFI GGGAC 1 cut(s) 801
BslI CCNNNNNNNGG 7 cut(s) 90, 171, 415, 584, 621, 689, 814
BsmFI GGGAC 1 cut(s) 801
BsnI GGCC 6 cut(s) 117, 175, 189, 425, 474, 741
Bsp1286I GDGCHC 3 cut(s) 364, 408, 577
Bsp13I TCCGGA 1 cut(s) 614
Bsp143I GATC 6 cut(s) 375, 587, 592, 793, 865, 913
Bsp19I CCATGG 2 cut(s) 456, 777
BspANI GGCC 6 cut(s) 117, 175, 189, 425, 474, 741
BspCNI CTCAG 5 cut(s) 183, 406, 666, 847, 852
BspEI TCCGGA 1 cut(s) 614
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 4 cut(s) 275, 574, 694, 789
BspMAI CTGCAG 1 cut(s) 892
BspMI ACCTGC 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 396
BspPI GGATC 2 cut(s) 595, 860
BspT107I GGYRCC 2 cut(s) 273, 572
BsrDI GCAATG 2 cut(s) 223, 888
BsrFI RCCGGY 2 cut(s) 212, 470
BsrI ACTGG 1 cut(s) 742
BssAI RCCGGY 2 cut(s) 212, 470
BssECI CCNNGG 4 cut(s) 28, 154, 456, 777
BssMI GATC 6 cut(s) 375, 587, 592, 793, 865, 913
BssNI GRCGYC 3 cut(s) 183, 210, 257
BssT1I CCWWGG 3 cut(s) 28, 456, 777
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 801, 1020
Bst6I CTCTTC 2 cut(s) 308, 697
BstACI GRCGYC 3 cut(s) 183, 210, 257
BstAPI GCANNNNNTGC 2 cut(s) 666, 887
BstC8I GCNNGC 6 cut(s) 214, 246, 394, 472, 486, 662
BstDEI CTNAG 7 cut(s) 63, 191, 414, 596, 653, 855, 860
BstDSI CCRYGG 2 cut(s) 456, 777
BstENI CCTNNNNNAGG 2 cut(s) 413, 582
BstF5I GGATG 2 cut(s) 823, 940
BstFNI CGCG 1 cut(s) 271
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 6 cut(s) 378, 590, 595, 796, 868, 916
BstMBI GATC 6 cut(s) 375, 587, 592, 793, 865, 913
BstMWI GCNNNNNNNGC 7 cut(s) 186, 218, 254, 292, 461, 666, 887
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 2 cut(s) 175, 276
BstSFI CTRYAG 1 cut(s) 888
BstSLI GKGCMC 2 cut(s) 408, 577
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 171, 874
BstV2I GAAGAC 2 cut(s) 441, 930
BstX2I RGATCY 2 cut(s) 587, 865
BstXI CCANNNNNNTGG 1 cut(s) 113
BstYI RGATCY 2 cut(s) 587, 865
BsuRI GGCC 6 cut(s) 117, 175, 189, 425, 474, 741
BtgI CCRYGG 2 cut(s) 456, 777
BtsCI GGATG 2 cut(s) 823, 940
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 6 cut(s) 214, 246, 394, 472, 486, 662
CaiI CAGNNNCTG 1 cut(s) 590
CfoI GCGC 1 cut(s) 286
Cfr10I RCCGGY 2 cut(s) 212, 470
Cfr13I GGNCC 4 cut(s) 96, 116, 174, 788
CseI GACGC 3 cut(s) 172, 218, 246
Csp6I GTAC 1 cut(s) 274
CspCI CAANNNNNGTGG 2 cut(s) 820, 855
CviAII CATG 5 cut(s) 379, 457, 529, 568, 778
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 7 cut(s) 63, 191, 414, 596, 653, 855, 860
DpnI GATC 6 cut(s) 377, 589, 594, 795, 867, 915
DpnII GATC 6 cut(s) 375, 587, 592, 793, 865, 913
EaeI YGGCCR 1 cut(s) 423
Eam1104I CTCTTC 2 cut(s) 308, 697
EarI CTCTTC 2 cut(s) 308, 697
EciI GGCGGA 2 cut(s) 66, 109
Eco130I CCWWGG 3 cut(s) 28, 456, 777
Eco47I GGWCC 2 cut(s) 96, 788
EcoNI CCTNNNNNAGG 2 cut(s) 413, 582
EcoO109I RGGNCCY 1 cut(s) 788
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 3 cut(s) 28, 456, 777
ErhI CCWWGG 3 cut(s) 28, 456, 777
FaeI CATG 5 cut(s) 382, 460, 532, 571, 781
FalI AAGNNNNNCTT 4 cut(s) 419, 451, 653, 685
FaqI GGGAC 1 cut(s) 801
FatI CATG 5 cut(s) 378, 456, 528, 567, 777
FauI CCCGC 2 cut(s) 145, 477
FbaI TGATCA 2 cut(s) 793, 913
FblI GTMKAC 1 cut(s) 260
Fnu4HI GCNGC 7 cut(s) 160, 181, 242, 249, 252, 255, 888
FokI GGATG 2 cut(s) 830, 947
Fsp4HI GCNGC 7 cut(s) 160, 181, 242, 249, 252, 255, 888
FspBI CTAG 2 cut(s) 287, 393
GlaI GCGC 1 cut(s) 285
GluI GCNGC 7 cut(s) 160, 181, 242, 249, 252, 255, 888
GsaI CCCAGC 2 cut(s) 345, 555
GsuI CTGGAG 1 cut(s) 974
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 6 cut(s) 117, 175, 189, 425, 474, 741
HapII CCGG 6 cut(s) 91, 172, 177, 213, 471, 615
HgaI GACGC 3 cut(s) 172, 218, 246
HhaI GCGC 1 cut(s) 286
Hin1I GRCGYC 3 cut(s) 183, 210, 257
Hin1II CATG 5 cut(s) 382, 460, 532, 571, 781
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HincII GTYRAC 2 cut(s) 261, 769
HindII GTYRAC 2 cut(s) 261, 769
HindIII AAGCTT 1 cut(s) 989
HinfI GANTC 5 cut(s) 21, 42, 129, 195, 556
HpaII CCGG 6 cut(s) 91, 172, 177, 213, 471, 615
Hpy166II GTNNAC 5 cut(s) 261, 406, 495, 769, 845
Hpy188I TCNGA 6 cut(s) 41, 415, 592, 697, 856, 918
Hpy8I GTNNAC 5 cut(s) 261, 406, 495, 769, 845
Hpy99I CGWCG 3 cut(s) 188, 212, 262
HpyAV CCTTC 4 cut(s) 78, 178, 214, 220
HpyCH4III ACNGT 2 cut(s) 801, 1020
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 3 cut(s) 295, 406, 890
HpyF10VI GCNNNNNNNGC 7 cut(s) 186, 218, 254, 292, 461, 666, 887
HpyF3I CTNAG 7 cut(s) 63, 191, 414, 596, 653, 855, 860
HpySE526I ACGT 1 cut(s) 398
Hsp92I GRCGYC 3 cut(s) 183, 210, 257
Hsp92II CATG 5 cut(s) 382, 460, 532, 571, 781
HspAI GCGC 1 cut(s) 284
Kpn2I TCCGGA 1 cut(s) 614
KpnI GGTACC 1 cut(s) 277
KroI GCCGGC 2 cut(s) 212, 470
KroNI GCCGGC 2 cut(s) 214, 472
Ksp22I TGATCA 2 cut(s) 793, 913
Kzo9I GATC 6 cut(s) 375, 587, 592, 793, 865, 913
LmnI GCTCC 4 cut(s) 42, 167, 338, 657
Lsp1109I GCAGC 2 cut(s) 171, 874
LweI GCATC 3 cut(s) 791, 925, 979
MaeI CTAG 2 cut(s) 287, 393
MaeII ACGT 1 cut(s) 398
MalI GATC 6 cut(s) 377, 589, 594, 795, 867, 915
MboI GATC 6 cut(s) 375, 587, 592, 793, 865, 913
MflI RGATCY 2 cut(s) 587, 865
MhlI GDGCHC 3 cut(s) 364, 408, 577
MlsI TGGCCA 1 cut(s) 425
MluCI AATT 2 cut(s) 638, 981
MluNI TGGCCA 1 cut(s) 425
Mox20I TGGCCA 1 cut(s) 425
MroI TCCGGA 1 cut(s) 614
MroNI GCCGGC 2 cut(s) 212, 470
MroXI GAANNNNTTC 2 cut(s) 230, 638
MscI TGGCCA 1 cut(s) 425
MslI CAYNNNNRTG 3 cut(s) 111, 401, 776
Msp20I TGGCCA 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 6 cut(s) 91, 172, 177, 213, 471, 615
MspR9I CCNGG 2 cut(s) 177, 278
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 7 cut(s) 186, 218, 254, 292, 461, 666, 887
NaeI GCCGGC 2 cut(s) 214, 472
NciI CCSGG 1 cut(s) 177
NcoI CCATGG 2 cut(s) 456, 777
NdeII GATC 6 cut(s) 375, 587, 592, 793, 865, 913
NgoMIV GCCGGC 2 cut(s) 212, 470
NheI GCTAGC 1 cut(s) 392
NlaIII CATG 5 cut(s) 382, 460, 532, 571, 781
NlaIV GGNNCC 4 cut(s) 275, 574, 694, 789
NmeAIII GCCGAG 1 cut(s) 135
OliI CACNNNNGTG 1 cut(s) 401
PdiI GCCGGC 2 cut(s) 214, 472
PdmI GAANNNNTTC 2 cut(s) 230, 638
PfeI GAWTC 5 cut(s) 21, 42, 129, 195, 556
PkrI GCNGC 7 cut(s) 161, 182, 243, 250, 253, 256, 889
PpuMI RGGWCCY 1 cut(s) 788
Psp5II RGGWCCY 1 cut(s) 788
Psp6I CCWGG 1 cut(s) 276
PspFI CCCAGC 2 cut(s) 341, 551
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 4 cut(s) 275, 574, 694, 789
PspPI GGNCC 4 cut(s) 96, 116, 174, 788
PspPPI RGGWCCY 1 cut(s) 788
PstI CTGCAG 1 cut(s) 892
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 2 cut(s) 587, 865
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 3 cut(s) 111, 401, 776
SalI GTCGAC 1 cut(s) 259
SatI GCNGC 7 cut(s) 160, 181, 242, 249, 252, 255, 888
Sau3AI GATC 6 cut(s) 375, 587, 592, 793, 865, 913
Sau96I GGNCC 4 cut(s) 96, 116, 174, 788
ScrFI CCNGG 2 cut(s) 177, 278
SduI GDGCHC 3 cut(s) 364, 408, 577
SfaNI GCATC 3 cut(s) 791, 925, 979
SfcI CTRYAG 1 cut(s) 888
SinI GGWCC 2 cut(s) 96, 788
SmiMI CAYNNNNRTG 3 cut(s) 111, 401, 776
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 2 cut(s) 638, 981
SspMI CTAG 2 cut(s) 287, 393
StyD4I CCNGG 2 cut(s) 175, 276
StyI CCWWGG 3 cut(s) 28, 456, 777
TaaI ACNGT 2 cut(s) 801, 1020
TaiI ACGT 1 cut(s) 401
TaqI TCGA 4 cut(s) 19, 207, 234, 260
TasI AATT 2 cut(s) 638, 981
TauI GCSGC 5 cut(s) 183, 244, 251, 254, 257
TfiI GAWTC 5 cut(s) 21, 42, 129, 195, 556
TseI GCWGC 2 cut(s) 159, 887
TspDTI ATGAA 2 cut(s) 767, 834
VneI GTGCAC 1 cut(s) 404
VpaK11BI GGWCC 2 cut(s) 96, 788
XagI CCTNNNNNAGG 2 cut(s) 413, 582
XapI RAATTY 1 cut(s) 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 260
XmnI GAANNNNTTC 2 cut(s) 230, 638
XspI CTAG 2 cut(s) 287, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.