Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010231

Physical Location & Seq

Genomic Coordinates Reverse (-)

59935872 .. 59939049

Gene Structure 3178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG376900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCAAAACCCTCATCTCGAATCTTCCAAGGTCTGCTCCGATTCCACCGCCACCAAATCTCTAAGCCTTCAACTCCGCCCACCACTTTCCGGCGGACCTACCACCACTCCAATGGCCCTCTCCCCCGATTCCCCCCCGCCCCCCCAAAACCCCTCGGCAGCTCCTCCTTCCGGCCCGGCGGCGTCGGCCTGAGATTCTTCTCCTTCGACGCCGGCAATGCCAAGAAGGTGTTCGAGAAGCCGCTGGCGGCGGCGGCGTCGACTTTCTCGCGGTACCAGGAGGCGCTAGGGTTGCAGGTTGAGGCGTTCTGGAAGAGGAACAATCTGGTGCTGGTGGGAGCTGGGGGAGTTGTGGTGTGTGCTCTGCTCTGGAAGATCATGTTTGGGATTGCTAGCACGTTTGTGCACCTCTCTGAGGGAATGGCCAAGTATGGCTTTTTAGCTCTGTCTTCTGCCATGGTTGCTTTCGCCGGCCTTTATCTGCGGGCAAGGTTCACAATAAATCCTGATAAAGTATATAGGATTGCCATGACAAAGCTAAATACATCTGCTGGGATTCTTGAGGTCATGGGTGCCCCTCTAACAGGATCTGATCTAAGAGCCTATATAATGTCCGGAGGTGGGTTTCAACTGAAAAAATTCAAGCCAACTCTCAGGAGCAAGCGGTGCTTCCTCATTTTCCCAATACGAGGTTCCGAAAGAAGAGGTCTGGTCAATGTTGAAGTAAAGAAGAAGAAAGGCCAGGTTTGTGCTTATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

27.85

Weight (kDa)

10.85

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40800 AT2G40800 AT3G56430
fragaria_vesca	FvH4_7g26230
malus_domestica	MD01G1171000.v1.1 MD07G1237400.v1.1
prunus_persica	Prupe.2G266500_v2.0.a1 Prupe.2G266500_v2.0.a1 Prupe.2G266500_v2.0.a1
pyrus_communis	pycom01g18320 pycom07g21370
rosa_chinensis	RchiOBHm_Chr1g0372681
rosa_laevigata	RLG00000026880
rosa_multiflora	Rmu_ssc0000419.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284760
rosa_rugosa	Rorug01G0373800
rosa_samantha	Rh1AG382300 Rh1BG345700 Rh1CG359100 Rh1DG376900
rosa_wichuraiana	Rw1G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
Acc65I	GGTACC	1 cut(s)	273
AccB1I	GGYRCC	2 cut(s)	273, 572
AccI	GTMKAC	1 cut(s)	260
AccII	CGCG	1 cut(s)	271
AccIII	TCCGGA	1 cut(s)	614
AclWI	GGATC	1 cut(s)	595
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	1 cut(s)	638
AcyI	GRCGYC	3 cut(s)	183, 210, 257
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	6 cut(s)	90, 171, 415, 584, 621, 689
AgsI	TTSAA	4 cut(s)	72, 629, 643, 722
AjnI	CCWGG	2 cut(s)	276, 741
AjuI	GAANNNNNNNTTGG	4 cut(s)	215, 247, 676, 708
AleI	CACNNNNGTG	1 cut(s)	401
AluBI	AGCT	4 cut(s)	162, 341, 443, 538
AluI	AGCT	4 cut(s)	162, 341, 443, 538
Alw21I	GWGCWC	2 cut(s)	364, 408
Alw44I	GTGCAC	1 cut(s)	404
AlwI	GGATC	1 cut(s)	595
AlwNI	CAGNNNCTG	1 cut(s)	590
Aor13HI	TCCGGA	1 cut(s)	614
AoxI	GGCC	6 cut(s)	115, 173, 187, 423, 472, 739
ApaLI	GTGCAC	1 cut(s)	404
ApeKI	GCWGC	1 cut(s)	159
ApoI	RAATTY	1 cut(s)	638
Asp700I	GAANNNNTTC	2 cut(s)	230, 638
Asp718I	GGTACC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	3 cut(s)	96, 116, 174
AsuC2I	CCSGG	1 cut(s)	177
AsuNHI	GCTAGC	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	96
BaeGI	GKGCMC	2 cut(s)	408, 577
BalI	TGGCCA	1 cut(s)	425
BanI	GGYRCC	2 cut(s)	273, 572
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	2 cut(s)	364, 408
BbvI	GCAGC	1 cut(s)	171
BciT130I	CCWGG	2 cut(s)	278, 743
BcnI	CCSGG	1 cut(s)	177
BfaI	CTAG	2 cut(s)	287, 393
BfoI	RGCGCY	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	6 cut(s)	160, 181, 242, 249, 252, 255
BlsI	GCNGC	6 cut(s)	161, 182, 243, 250, 253, 256
Bme1390I	CCNGG	3 cut(s)	177, 278, 743
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	3 cut(s)	96, 116, 174
BmiI	GGNNCC	3 cut(s)	275, 574, 694
BmrFI	CCNGG	3 cut(s)	177, 278, 743
BmtI	GCTAGC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	177
BsaHI	GRCGYC	3 cut(s)	183, 210, 257
BsaJI	CCNNGG	3 cut(s)	28, 154, 456
BsaWI	WCCGGW	1 cut(s)	614
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 339, 369
Bsc4I	CCNNNNNNNGG	6 cut(s)	90, 171, 415, 584, 621, 689
Bse118I	RCCGGY	2 cut(s)	212, 470
Bse3DI	GCAATG	1 cut(s)	223
BseAI	TCCGGA	1 cut(s)	614
BseBI	CCWGG	2 cut(s)	278, 743
BseDI	CCNNGG	3 cut(s)	28, 154, 456
BseLI	CCNNNNNNNGG	6 cut(s)	90, 171, 415, 584, 621, 689
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	3 cut(s)	182, 405, 667
BseRI	GAGGAG	1 cut(s)	154
BseSI	GKGCMC	2 cut(s)	408, 577
BseXI	GCAGC	1 cut(s)	171
BseYI	CCCAGC	2 cut(s)	341, 551
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	6 cut(s)	117, 175, 189, 425, 474, 741
BshNI	GGYRCC	2 cut(s)	273, 572
BsiHKAI	GWGCWC	2 cut(s)	364, 408
BsiSI	CCGG	6 cut(s)	91, 172, 177, 213, 471, 615
BslI	CCNNNNNNNGG	6 cut(s)	90, 171, 415, 584, 621, 689
BsnI	GGCC	6 cut(s)	117, 175, 189, 425, 474, 741
Bsp1286I	GDGCHC	3 cut(s)	364, 408, 577
Bsp13I	TCCGGA	1 cut(s)	614
Bsp143I	GATC	3 cut(s)	375, 587, 592
Bsp19I	CCATGG	1 cut(s)	456
BspANI	GGCC	6 cut(s)	117, 175, 189, 425, 474, 741
BspCNI	CTCAG	3 cut(s)	183, 406, 666
BspEI	TCCGGA	1 cut(s)	614
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	3 cut(s)	275, 574, 694
BspMI	ACCTGC	1 cut(s)	286
BspOI	GCTAGC	1 cut(s)	396
BspPI	GGATC	1 cut(s)	595
BspT107I	GGYRCC	2 cut(s)	273, 572
BsrDI	GCAATG	1 cut(s)	223
BsrFI	RCCGGY	2 cut(s)	212, 470
BssAI	RCCGGY	2 cut(s)	212, 470
BssECI	CCNNGG	3 cut(s)	28, 154, 456
BssMI	GATC	3 cut(s)	375, 587, 592
BssNI	GRCGYC	3 cut(s)	183, 210, 257
BssT1I	CCWWGG	2 cut(s)	28, 456
Bst2UI	CCWGG	2 cut(s)	278, 743
Bst6I	CTCTTC	2 cut(s)	308, 697
BstACI	GRCGYC	3 cut(s)	183, 210, 257
BstAPI	GCANNNNNTGC	1 cut(s)	666
BstC8I	GCNNGC	6 cut(s)	214, 246, 394, 472, 486, 662
BstDEI	CTNAG	5 cut(s)	63, 191, 414, 596, 653
BstDSI	CCRYGG	1 cut(s)	456
BstENI	CCTNNNNNAGG	2 cut(s)	413, 582
BstFNI	CGCG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	3 cut(s)	378, 590, 595
BstMBI	GATC	3 cut(s)	375, 587, 592
BstMWI	GCNNNNNNNGC	6 cut(s)	186, 218, 254, 292, 461, 666
BstNI	CCWGG	2 cut(s)	278, 743
BstSCI	CCNGG	3 cut(s)	175, 276, 741
BstSLI	GKGCMC	2 cut(s)	408, 577
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	587
BstXI	CCANNNNNNTGG	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	587
BsuRI	GGCC	6 cut(s)	117, 175, 189, 425, 474, 741
BtgI	CCRYGG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	6 cut(s)	214, 246, 394, 472, 486, 662
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	1 cut(s)	286
Cfr10I	RCCGGY	2 cut(s)	212, 470
Cfr13I	GGNCC	3 cut(s)	96, 116, 174
CseI	GACGC	3 cut(s)	172, 218, 246
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	4 cut(s)	379, 457, 529, 568
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	5 cut(s)	63, 191, 414, 596, 653
DpnI	GATC	3 cut(s)	377, 589, 594
DpnII	GATC	3 cut(s)	375, 587, 592
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	2 cut(s)	308, 697
EarI	CTCTTC	2 cut(s)	308, 697
EciI	GGCGGA	2 cut(s)	66, 109
Eco130I	CCWWGG	2 cut(s)	28, 456
Eco47I	GGWCC	1 cut(s)	96
EcoNI	CCTNNNNNAGG	2 cut(s)	413, 582
EcoRII	CCWGG	2 cut(s)	276, 741
EcoT14I	CCWWGG	2 cut(s)	28, 456
ErhI	CCWWGG	2 cut(s)	28, 456
FaeI	CATG	4 cut(s)	382, 460, 532, 571
FalI	AAGNNNNNCTT	4 cut(s)	419, 451, 653, 685
FatI	CATG	4 cut(s)	378, 456, 528, 567
FauI	CCCGC	2 cut(s)	145, 477
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	6 cut(s)	160, 181, 242, 249, 252, 255
Fsp4HI	GCNGC	6 cut(s)	160, 181, 242, 249, 252, 255
FspBI	CTAG	2 cut(s)	287, 393
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	6 cut(s)	160, 181, 242, 249, 252, 255
GsaI	CCCAGC	2 cut(s)	345, 555
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	6 cut(s)	117, 175, 189, 425, 474, 741
HapII	CCGG	6 cut(s)	91, 172, 177, 213, 471, 615
HgaI	GACGC	3 cut(s)	172, 218, 246
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	3 cut(s)	183, 210, 257
Hin1II	CATG	4 cut(s)	382, 460, 532, 571
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	5 cut(s)	21, 42, 129, 195, 556
HpaII	CCGG	6 cut(s)	91, 172, 177, 213, 471, 615
Hpy166II	GTNNAC	3 cut(s)	261, 406, 495
Hpy188I	TCNGA	4 cut(s)	41, 415, 592, 697
Hpy188III	TCNNGA	8 cut(s)	18, 235, 310, 370, 506, 560, 615, 655
Hpy8I	GTNNAC	3 cut(s)	261, 406, 495
Hpy99I	CGWCG	3 cut(s)	188, 212, 262
HpyAV	CCTTC	4 cut(s)	78, 178, 214, 220
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	2 cut(s)	295, 406
HpyF10VI	GCNNNNNNNGC	6 cut(s)	186, 218, 254, 292, 461, 666
HpyF3I	CTNAG	5 cut(s)	63, 191, 414, 596, 653
HpySE526I	ACGT	1 cut(s)	398
Hsp92I	GRCGYC	3 cut(s)	183, 210, 257
Hsp92II	CATG	4 cut(s)	382, 460, 532, 571
HspAI	GCGC	1 cut(s)	284
Kpn2I	TCCGGA	1 cut(s)	614
KpnI	GGTACC	1 cut(s)	277
KroI	GCCGGC	2 cut(s)	212, 470
KroNI	GCCGGC	2 cut(s)	214, 472
Kzo9I	GATC	3 cut(s)	375, 587, 592
LmnI	GCTCC	4 cut(s)	42, 167, 338, 657
Lsp1109I	GCAGC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	287, 393
MaeII	ACGT	1 cut(s)	398
MalI	GATC	3 cut(s)	377, 589, 594
MboI	GATC	3 cut(s)	375, 587, 592
MboII	GAAGA	8 cut(s)	16, 190, 325, 385, 441, 714, 742, 745
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	3 cut(s)	364, 408, 577
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	1 cut(s)	638
MluNI	TGGCCA	1 cut(s)	425
Mox20I	TGGCCA	1 cut(s)	425
MroI	TCCGGA	1 cut(s)	614
MroNI	GCCGGC	2 cut(s)	212, 470
MroXI	GAANNNNTTC	2 cut(s)	230, 638
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	1 cut(s)	760
MslI	CAYNNNNRTG	2 cut(s)	111, 401
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	6 cut(s)	91, 172, 177, 213, 471, 615
MspR9I	CCNGG	3 cut(s)	177, 278, 743
MvaI	CCWGG	2 cut(s)	278, 743
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	6 cut(s)	186, 218, 254, 292, 461, 666
NaeI	GCCGGC	2 cut(s)	214, 472
NciI	CCSGG	1 cut(s)	177
NcoI	CCATGG	1 cut(s)	456
NdeII	GATC	3 cut(s)	375, 587, 592
NgoMIV	GCCGGC	2 cut(s)	212, 470
NheI	GCTAGC	1 cut(s)	392
NlaIII	CATG	4 cut(s)	382, 460, 532, 571
NlaIV	GGNNCC	3 cut(s)	275, 574, 694
NmeAIII	GCCGAG	1 cut(s)	135
OliI	CACNNNNGTG	1 cut(s)	401
PdiI	GCCGGC	2 cut(s)	214, 472
PdmI	GAANNNNTTC	2 cut(s)	230, 638
PfeI	GAWTC	5 cut(s)	21, 42, 129, 195, 556
PkrI	GCNGC	6 cut(s)	161, 182, 243, 250, 253, 256
Psp6I	CCWGG	2 cut(s)	276, 741
PspFI	CCCAGC	2 cut(s)	341, 551
PspGI	CCWGG	2 cut(s)	276, 741
PspN4I	GGNNCC	3 cut(s)	275, 574, 694
PspPI	GGNCC	3 cut(s)	96, 116, 174
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	2 cut(s)	111, 401
SalI	GTCGAC	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	760
SatI	GCNGC	6 cut(s)	160, 181, 242, 249, 252, 255
Sau3AI	GATC	3 cut(s)	375, 587, 592
Sau96I	GGNCC	3 cut(s)	96, 116, 174
ScrFI	CCNGG	3 cut(s)	177, 278, 743
SduI	GDGCHC	3 cut(s)	364, 408, 577
SinI	GGWCC	1 cut(s)	96
SmiMI	CAYNNNNRTG	2 cut(s)	111, 401
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	1 cut(s)	638
SspMI	CTAG	2 cut(s)	287, 393
StyD4I	CCNGG	3 cut(s)	175, 276, 741
StyI	CCWWGG	2 cut(s)	28, 456
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	4 cut(s)	19, 207, 234, 260
TasI	AATT	1 cut(s)	638
TauI	GCSGC	5 cut(s)	183, 244, 251, 254, 257
TfiI	GAWTC	5 cut(s)	21, 42, 129, 195, 556
Tru1I	TTAA	1 cut(s)	760
Tru9I	TTAA	1 cut(s)	760
TseI	GCWGC	1 cut(s)	159
VneI	GTGCAC	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	96
XagI	CCTNNNNNAGG	2 cut(s)	413, 582
XapI	RAATTY	1 cut(s)	638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	260
XmnI	GAANNNNTTC	2 cut(s)	230, 638
XspI	CTAG	2 cut(s)	287, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.