MD07G1237400.v1.1

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
30984452 .. 30986282
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1237400.v1.1.491

Sequence Viewer

Length: 1053 bp
ATGTCAAAACCCTCGTCTCGGATCTTCGAAGGCCTGCTAAGATTTCACCGCAGCCAAATCTCAAAACCCTCATCTCCGTCTCCGCCTTCGTTGTCCTCCGCCAGGAGGAGCTACCACTCCAGCAATGGGCCTCCTCCCCAGTTTCCCTCTCACCCGAAAACAGTCCCCGGAGGCGGGGTTGGCAGATACTCGGGGCCGGGTATGGGCCTGGGCATGAGGTTTTTCTCTTTCAAGCCGTCGAATTTCAGCAAAATCGATGCTAAGAAGGTGTTTGATAAGCCGCTCTCTGCGGCGTCATCGGCTTTCTCGCGGTACCAGGAGGCCATTGGGTTGCAGATTGAGGCGTTCTGGAAGAGGAACAATCTGGTGCTGTTGGGAATTGGGGGAGTGCTGGTTTGTGCTTTGCTATGGAGGATGATGTTTGGGATTGCTAGCACCTTCATTGGACTCTCTGAAGGCATGGCCAAGTATGGCTTCCTCGCCCTTTCTACCGCCATTGTCGCCTTCGCTGGCCTTTACATCCGCTCGAGGTTCACAATCAATCCTGATAAAGTTTATCGAATCGCAATGAGGAAGCTTAATACATCTGCTGGGATTCTCGAGGTTATGGGTGCTCCTCTCTCTGGATCAGAGCTAAGAGCTTACGTAATGTCCGGAGGTGGAGTCACTCTGAAGAAGTTCAAGCCAACTTTTAGGAGCAAGCGGTGTTTCCTCATTTTCCCCGTGCGAGGTTCTGAGAGGAAGGGTCTGGTTAATGTTGAAGTAAAGAAGAAAGAAGGCCAGTATGATATGAAGCTACTGGCAGTTGACATTCCCATGGCATCAGGACCTGACCAGCGCTTGTTCCTGATTGGCGATGAAGAAGAGTACAAAGTTGGTGGCGGACTAATAGCTGAGCTTAGAGATCCGGTTGTGAAAGCAATGGCTGCAACCGAGGAATTTGATAATCTTGATCAGATTGAAGAAGAGGAGGATGCTGAAAAAGCACTTGAGGAGGCAGAAAAAAAGCACCGCGAAGAAATTGAAAAGCTCGAAAAAAGCGGGTCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

38.49

Weight (kDa)

9.53

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 312
AccBSI CCGCTC 2 cut(s) 283, 525
AccII CGCG 2 cut(s) 310, 1014
AccIII TCCGGA 1 cut(s) 653
AclWI GGATC 3 cut(s) 29, 634, 899
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 2 cut(s) 241, 938
AcuI CTGAAG 2 cut(s) 474, 692
AcyI GRCGYC 1 cut(s) 293
AfaI GTAC 2 cut(s) 314, 869
AfeI AGCGCT 1 cut(s) 839
AfiI CCNNNNNNNGG 9 cut(s) 18, 102, 105, 126, 173, 174, 203, 623, 728
AgsI TTSAA 5 cut(s) 232, 682, 761, 962, 1025
AjnI CCWGG 3 cut(s) 101, 207, 315
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 8 cut(s) 111, 577, 634, 641, 796, 893, 898, 1030
AluI AGCT 8 cut(s) 111, 577, 634, 641, 796, 893, 898, 1030
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 2 cut(s) 21, 84
AlwI GGATC 3 cut(s) 29, 634, 899
AlwNI CAGNNNCTG 1 cut(s) 830
Ama87I CYCGRG 3 cut(s) 190, 526, 599
Aor13HI TCCGGA 1 cut(s) 653
Aor51HI AGCGCT 1 cut(s) 839
AoxI GGCC 8 cut(s) 31, 128, 194, 205, 321, 462, 511, 778
ApeKI GCWGC 2 cut(s) 51, 926
ApoI RAATTY 2 cut(s) 241, 938
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 677
Asp718I GGTACC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 840
AspS9I GGNCC 4 cut(s) 128, 194, 205, 827
AsuC2I CCSGG 2 cut(s) 168, 198
AsuHPI GGTGA 2 cut(s) 38, 143
AsuII TTCGAA 1 cut(s) 27
AsuNHI GCTAGC 1 cut(s) 431
AvaI CYCGRG 3 cut(s) 190, 526, 599
AvaII GGWCC 1 cut(s) 827
BalI TGGCCA 1 cut(s) 464
BanI GGYRCC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 2 cut(s) 63, 913
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 3 cut(s) 103, 209, 317
BclI TGATCA 1 cut(s) 952
BcnI CCSGG 2 cut(s) 168, 198
BcoDI GTCTC 2 cut(s) 21, 84
BfaI CTAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 841
BisI GCNGC 4 cut(s) 52, 281, 291, 927
BlpI GCTNAGC 1 cut(s) 894
BlsI GCNGC 4 cut(s) 53, 282, 292, 928
Bme1390I CCNGG 5 cut(s) 103, 168, 198, 209, 317
Bme18I GGWCC 1 cut(s) 827
BmeT110I CYCGRG 3 cut(s) 190, 526, 599
BmgT120I GGNCC 4 cut(s) 128, 194, 205, 827
BmiI GGNNCC 2 cut(s) 195, 314
BmrFI CCNGG 5 cut(s) 103, 168, 198, 209, 317
BmrI ACTGGG 1 cut(s) 133
BmsI GCATC 3 cut(s) 247, 830, 964
BmtI GCTAGC 1 cut(s) 435
BmuI ACTGGG 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 103
Bpu1102I GCTNAGC 1 cut(s) 894
Bpu14I TTCGAA 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 1010
BpuMI CCSGG 2 cut(s) 168, 198
Bsa29I ATCGAT 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 646
BsaHI GRCGYC 1 cut(s) 293
BsaJI CCNNGG 4 cut(s) 166, 208, 816, 933
BsaWI WCCGGW 2 cut(s) 653, 907
BsaXI ACNNNNNCTCC 6 cut(s) 162, 192, 378, 408, 648, 678
Bsc4I CCNNNNNNNGG 9 cut(s) 18, 102, 105, 126, 173, 174, 203, 623, 728
Bse1I ACTGG 3 cut(s) 139, 781, 804
Bse3DI GCAATG 3 cut(s) 130, 573, 927
BseAI TCCGGA 1 cut(s) 653
BseBI CCWGG 3 cut(s) 103, 209, 317
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 4 cut(s) 166, 208, 816, 933
BseGI GGATG 3 cut(s) 420, 519, 979
BseLI CCNNNNNNNGG 9 cut(s) 18, 102, 105, 126, 173, 174, 203, 623, 728
BseMI GCAATG 3 cut(s) 130, 573, 927
BseMII CTCAG 2 cut(s) 726, 885
BseNI ACTGG 3 cut(s) 139, 781, 804
BseRI GAGGAG 5 cut(s) 121, 123, 606, 983, 1007
BseXI GCAGC 2 cut(s) 63, 913
BseYI CCCAGC 1 cut(s) 590
Bsh1236I CGCG 2 cut(s) 310, 1014
BshFI GGCC 8 cut(s) 33, 130, 196, 207, 323, 464, 513, 780
BshNI GGYRCC 1 cut(s) 312
BshVI ATCGAT 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 616
BsiHKCI CYCGRG 3 cut(s) 190, 526, 599
BsiSI CCGG 4 cut(s) 168, 197, 654, 908
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 9 cut(s) 18, 102, 105, 126, 173, 174, 203, 623, 728
BsmAI GTCTC 2 cut(s) 21, 84
BsmBI CGTCTC 2 cut(s) 21, 84
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 8 cut(s) 33, 130, 196, 207, 323, 464, 513, 780
BsoBI CYCGRG 3 cut(s) 190, 526, 599
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 616
Bsp13I TCCGGA 1 cut(s) 653
Bsp143I GATC 4 cut(s) 21, 626, 904, 952
Bsp1720I GCTNAGC 1 cut(s) 894
Bsp19I CCATGG 1 cut(s) 816
BspANI GGCC 8 cut(s) 33, 130, 196, 207, 323, 464, 513, 780
BspCNI CTCAG 2 cut(s) 727, 886
BspDI ATCGAT 1 cut(s) 255
BspEI TCCGGA 1 cut(s) 653
BspFNI CGCG 2 cut(s) 310, 1014
BspLI GGNNCC 2 cut(s) 195, 314
BspOI GCTAGC 1 cut(s) 435
BspPI GGATC 3 cut(s) 29, 634, 899
BspT104I TTCGAA 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 312
BsrBI CCGCTC 2 cut(s) 283, 525
BsrDI GCAATG 3 cut(s) 130, 573, 927
BsrI ACTGG 3 cut(s) 139, 781, 804
BssECI CCNNGG 4 cut(s) 166, 208, 816, 933
BssMI GATC 4 cut(s) 21, 626, 904, 952
BssNI GRCGYC 1 cut(s) 293
BssT1I CCWWGG 1 cut(s) 816
Bst2UI CCWGG 3 cut(s) 103, 209, 317
Bst4CI ACNGT 2 cut(s) 163, 1050
Bst6I CTCTTC 3 cut(s) 347, 858, 960
BstACI GRCGYC 1 cut(s) 293
BstAPI GCANNNNNTGC 1 cut(s) 926
BstBAI YACGTR 1 cut(s) 646
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 4 cut(s) 35, 433, 511, 701
BstDEI CTNAG 6 cut(s) 38, 261, 635, 735, 894, 899
BstDSI CCRYGG 1 cut(s) 816
BstENI CCTNNNNNAGG 1 cut(s) 100
BstF5I GGATG 3 cut(s) 420, 519, 979
BstFNI CGCG 2 cut(s) 310, 1014
BstH2I RGCGCY 1 cut(s) 841
BstHHI GCGC 1 cut(s) 840
BstKTI GATC 4 cut(s) 24, 629, 907, 955
BstMAI GTCTC 2 cut(s) 21, 84
BstMBI GATC 4 cut(s) 21, 626, 904, 952
BstMWI GCNNNNNNNGC 5 cut(s) 180, 299, 500, 926, 983
BstNI CCWGG 3 cut(s) 103, 209, 317
BstSCI CCNGG 5 cut(s) 101, 166, 196, 207, 315
BstSNI TACGTA 1 cut(s) 646
BstUI CGCG 2 cut(s) 310, 1014
BstV1I GCAGC 2 cut(s) 63, 913
BstX2I RGATCY 2 cut(s) 21, 904
BstYI RGATCY 2 cut(s) 21, 904
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 8 cut(s) 33, 130, 196, 207, 323, 464, 513, 780
BsuTUI ATCGAT 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 816
BtgZI GCGATG 1 cut(s) 870
BtsCI GGATG 3 cut(s) 420, 519, 979
Cac8I GCNNGC 4 cut(s) 35, 433, 511, 701
CaiI CAGNNNCTG 1 cut(s) 830
CfoI GCGC 1 cut(s) 840
Cfr13I GGNCC 4 cut(s) 128, 194, 205, 827
ClaI ATCGAT 1 cut(s) 255
CseI GACGC 1 cut(s) 282
Csp6I GTAC 2 cut(s) 313, 868
CspCI CAANNNNNGTGG 2 cut(s) 859, 894
CviAII CATG 3 cut(s) 214, 460, 817
CviQI GTAC 2 cut(s) 313, 868
DdeI CTNAG 6 cut(s) 38, 261, 635, 735, 894, 899
DpnI GATC 4 cut(s) 23, 628, 906, 954
DpnII GATC 4 cut(s) 21, 626, 904, 952
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 3 cut(s) 347, 858, 960
EarI CTCTTC 3 cut(s) 347, 858, 960
EciI GGCGGA 3 cut(s) 72, 88, 897
Eco105I TACGTA 1 cut(s) 646
Eco130I CCWWGG 1 cut(s) 816
Eco147I AGGCCT 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 827
Eco47III AGCGCT 1 cut(s) 839
Eco57I CTGAAG 2 cut(s) 474, 692
Eco88I CYCGRG 3 cut(s) 190, 526, 599
EcoNI CCTNNNNNAGG 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 827
EcoRII CCWGG 3 cut(s) 101, 207, 315
EcoT14I CCWWGG 1 cut(s) 816
ErhI CCWWGG 1 cut(s) 816
Esp3I CGTCTC 2 cut(s) 21, 84
FaeI CATG 3 cut(s) 217, 463, 820
FaiI YATR 9 cut(s) 203, 215, 409, 461, 471, 608, 786, 791, 818
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 1 cut(s) 149
FatI CATG 3 cut(s) 213, 459, 816
FauI CCCGC 2 cut(s) 167, 1034
FbaI TGATCA 1 cut(s) 952
Fnu4HI GCNGC 4 cut(s) 52, 281, 291, 927
FokI GGATG 3 cut(s) 427, 506, 986
Fsp4HI GCNGC 4 cut(s) 52, 281, 291, 927
FspBI CTAG 1 cut(s) 432
GlaI GCGC 1 cut(s) 839
GluI GCNGC 4 cut(s) 52, 281, 291, 927
GsaI CCCAGC 1 cut(s) 594
GsuI CTGGAG 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 841
HaeIII GGCC 8 cut(s) 33, 130, 196, 207, 323, 464, 513, 780
HapII CCGG 4 cut(s) 168, 197, 654, 908
HgaI GACGC 1 cut(s) 282
HhaI GCGC 1 cut(s) 840
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 3 cut(s) 217, 463, 820
Hin6I GCGC 1 cut(s) 838
HinP1I GCGC 1 cut(s) 838
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 4 cut(s) 447, 561, 595, 663
HpaII CCGG 4 cut(s) 168, 197, 654, 908
HphI GGTGA 2 cut(s) 38, 143
Hpy166II GTNNAC 2 cut(s) 534, 808
Hpy188I TCNGA 6 cut(s) 21, 454, 631, 672, 736, 957
Hpy188III TCNNGA 8 cut(s) 349, 545, 599, 624, 654, 825, 847, 950
Hpy8I GTNNAC 2 cut(s) 534, 808
Hpy99I CGWCG 1 cut(s) 241
HpyAV CCTTC 8 cut(s) 23, 96, 259, 448, 449, 514, 736, 770
HpyCH4III ACNGT 2 cut(s) 163, 1050
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 2 cut(s) 334, 929
HpyF10VI GCNNNNNNNGC 5 cut(s) 180, 299, 500, 926, 983
HpyF3I CTNAG 6 cut(s) 38, 261, 635, 735, 894, 899
HpySE526I ACGT 1 cut(s) 645
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 3 cut(s) 217, 463, 820
HspAI GCGC 1 cut(s) 838
Kpn2I TCCGGA 1 cut(s) 653
KpnI GGTACC 1 cut(s) 316
Ksp22I TGATCA 1 cut(s) 952
Kzo9I GATC 4 cut(s) 21, 626, 904, 952
LmnI GCTCC 3 cut(s) 108, 619, 696
Lsp1109I GCAGC 2 cut(s) 63, 913
LweI GCATC 3 cut(s) 247, 830, 964
MaeI CTAG 1 cut(s) 432
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 2 cut(s) 664, 1044
MalI GATC 4 cut(s) 23, 628, 906, 954
MbiI CCGCTC 2 cut(s) 283, 525
MboI GATC 4 cut(s) 21, 626, 904, 952
MboII GAAGA 9 cut(s) 16, 364, 685, 781, 872, 875, 974, 977, 1028
MflI RGATCY 2 cut(s) 21, 904
MhlI GDGCHC 1 cut(s) 616
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 4 cut(s) 241, 378, 938, 1020
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 2 cut(s) 441, 672
Mox20I TGGCCA 1 cut(s) 464
MroI TCCGGA 1 cut(s) 653
MroXI GAANNNNTTC 1 cut(s) 677
MscI TGGCCA 1 cut(s) 464
MseI TTAA 2 cut(s) 579, 753
MslI CAYNNNNRTG 1 cut(s) 815
Msp20I TGGCCA 1 cut(s) 464
MspI CCGG 4 cut(s) 168, 197, 654, 908
MspR9I CCNGG 5 cut(s) 103, 168, 198, 209, 317
MvaI CCWGG 3 cut(s) 103, 209, 317
MvnI CGCG 2 cut(s) 310, 1014
MwoI GCNNNNNNNGC 5 cut(s) 180, 299, 500, 926, 983
NciI CCSGG 2 cut(s) 168, 198
NcoI CCATGG 1 cut(s) 816
NdeII GATC 4 cut(s) 21, 626, 904, 952
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 3 cut(s) 217, 463, 820
NlaIV GGNNCC 2 cut(s) 195, 314
NmuCI GTSAC 2 cut(s) 664, 1044
NspV TTCGAA 1 cut(s) 27
PaeR7I CTCGAG 2 cut(s) 526, 599
PceI AGGCCT 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 677
PfeI GAWTC 2 cut(s) 561, 595
PkrI GCNGC 4 cut(s) 53, 282, 292, 928
PleI GAGTC 2 cut(s) 441, 671
PpsI GAGTC 2 cut(s) 441, 671
Ppu21I YACGTR 1 cut(s) 646
PpuMI RGGWCCY 1 cut(s) 827
Psp5II RGGWCCY 1 cut(s) 827
Psp6I CCWGG 3 cut(s) 101, 207, 315
PspFI CCCAGC 1 cut(s) 590
PspGI CCWGG 3 cut(s) 101, 207, 315
PspN4I GGNNCC 2 cut(s) 195, 314
PspPI GGNCC 4 cut(s) 128, 194, 205, 827
PspPPI RGGWCCY 1 cut(s) 827
PspXI VCTCGAGB 1 cut(s) 526
PstNI CAGNNNCTG 1 cut(s) 830
PsuI RGATCY 2 cut(s) 21, 904
RsaI GTAC 2 cut(s) 314, 869
RsaNI GTAC 2 cut(s) 313, 868
RseI CAYNNNNRTG 1 cut(s) 815
SaqAI TTAA 2 cut(s) 579, 753
SatI GCNGC 4 cut(s) 52, 281, 291, 927
Sau3AI GATC 4 cut(s) 21, 626, 904, 952
Sau96I GGNCC 4 cut(s) 128, 194, 205, 827
SchI GAGTC 2 cut(s) 441, 672
ScrFI CCNGG 5 cut(s) 103, 168, 198, 209, 317
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 3 cut(s) 247, 830, 964
Sfr274I CTCGAG 2 cut(s) 526, 599
SfuI TTCGAA 1 cut(s) 27
SinI GGWCC 1 cut(s) 827
SlaI CTCGAG 2 cut(s) 526, 599
SmiMI CAYNNNNRTG 1 cut(s) 815
SmlI CTYRAG 3 cut(s) 526, 599, 989
SmoI CTYRAG 3 cut(s) 526, 599, 989
SnaBI TACGTA 1 cut(s) 646
Sse9I AATT 4 cut(s) 241, 378, 938, 1020
SseBI AGGCCT 1 cut(s) 33
SspMI CTAG 1 cut(s) 432
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 5 cut(s) 101, 166, 196, 207, 315
StyI CCWWGG 1 cut(s) 816
TaaI ACNGT 2 cut(s) 163, 1050
TaiI ACGT 1 cut(s) 648
TaqI TCGA 7 cut(s) 27, 239, 255, 527, 559, 600, 1032
TasI AATT 4 cut(s) 241, 378, 938, 1020
TatI WGTACW 1 cut(s) 867
TauI GCSGC 2 cut(s) 283, 293
TfiI GAWTC 2 cut(s) 561, 595
Tru1I TTAA 2 cut(s) 579, 753
Tru9I TTAA 2 cut(s) 579, 753
TseFI GTSAC 2 cut(s) 664, 1044
TseI GCWGC 2 cut(s) 51, 926
Tsp45I GTSAC 2 cut(s) 664, 1044
TspDTI ATGAA 3 cut(s) 430, 806, 873
TspGWI ACGGA 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 827
XagI CCTNNNNNAGG 1 cut(s) 100
XapI RAATTY 2 cut(s) 241, 938
XcmI CCANNNNNNNNNTGG 2 cut(s) 122, 323
XhoI CTCGAG 2 cut(s) 526, 599
XmnI GAANNNNTTC 1 cut(s) 677
XspI CTAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.