Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010231

Physical Location & Seq

Genomic Coordinates Forward (+)

6307447 .. 6310380

Gene Structure 2934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTCAAAACCCTCATCTCGAATCTTCCAAGGTCTGCTCCGATTCCACCGCCACCAAATCTCTAAGCCCCAAACTCCGCCCACCACTTTCCGGCGGACCTACCACCACTCCAATGGCCCTCTCCCCCGATTCCCCGCTCCCCCAAAACCCCTCGGCAGCTCCTCCTTCCGGCCCGGCGGCGTCGGCCTGAGATTCTTCTCCTTCGACGCCGGCAATGCCAAGAAGGTGTTCGAGAAGCCGCTGGCGGCGGCGGCGTCGACTTTCTCGCGGTACCAGGAGGCGCTAGGGTTGCAGGTTGAGGCGTTCTGGAAGAGGAACAATCTGGTGCTGGTGGGAGCTGGAGGAGTTGTGGTGTGTGCTCTGCTCTGGAAGATCATGTTTGGGATTGCTAGCACATTTGTGCACCTCTCTGAGGGAATGGGCCAAGTACGGCTTTTTTTAGCTCTGTCTTCTGCCATGGTTGCTTTCGCCGTCTTTCATGAACCATTTCAACTTGGTAGTTATAAGGGCCTTTATCTGCGGGCAAGGTTCACAATAAATCCTGATAAAGTATATAGGATTGCCATGACAAAGCTAAATACATCTGCTGGGATACTTGAGGTCATGGGTGCCCCTCTGACAGGATCAGATCTAAGAGCCTATATAATGTCCGGAGGTGGGTTTCAACTGAAAAAAAATTCAAGCCAACTCTCAGGAGCAAGCGGTGCTTCCTCATTTTCCCAATACGAGGTTCCGAAAGAAGAGGTCTGGTCAATGTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

27.84

Weight (kDa)

10.39

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40800 AT2G40800 AT3G56430
fragaria_vesca	FvH4_7g26230
malus_domestica	MD01G1171000.v1.1 MD07G1237400.v1.1
prunus_persica	Prupe.2G266500_v2.0.a1 Prupe.2G266500_v2.0.a1 Prupe.2G266500_v2.0.a1
pyrus_communis	pycom01g18320 pycom07g21370
rosa_chinensis	RchiOBHm_Chr1g0372681
rosa_laevigata	RLG00000026880
rosa_multiflora	Rmu_ssc0000419.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284760
rosa_rugosa	Rorug01G0373800
rosa_samantha	Rh1AG382300 Rh1BG345700 Rh1CG359100 Rh1DG376900
rosa_wichuraiana	Rw1G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
Acc36I	ACCTGC	1 cut(s)	283
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	2 cut(s)	270, 608
AccBSI	CCGCTC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	257
AccII	CGCG	1 cut(s)	268
AccIII	TCCGGA	1 cut(s)	650
AclWI	GGATC	1 cut(s)	631
AcsI	RAATTY	1 cut(s)	676
AcyI	GRCGYC	3 cut(s)	180, 207, 254
AfaI	GTAC	2 cut(s)	272, 429
AfiI	CCNNNNNNNGG	6 cut(s)	90, 168, 412, 620, 657, 727
AgsI	TTSAA	4 cut(s)	491, 665, 681, 760
AjnI	CCWGG	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	4 cut(s)	212, 244, 714, 746
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	4 cut(s)	159, 338, 443, 574
AluI	AGCT	4 cut(s)	159, 338, 443, 574
Alw21I	GWGCWC	2 cut(s)	361, 405
Alw44I	GTGCAC	1 cut(s)	401
AlwI	GGATC	1 cut(s)	631
Aor13HI	TCCGGA	1 cut(s)	650
AoxI	GGCC	5 cut(s)	115, 170, 184, 421, 508
ApaLI	GTGCAC	1 cut(s)	401
ApeKI	GCWGC	1 cut(s)	156
ApoI	RAATTY	1 cut(s)	676
Asp700I	GAANNNNTTC	2 cut(s)	227, 486
Asp718I	GGTACC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	5 cut(s)	96, 116, 171, 421, 508
AsuC2I	CCSGG	1 cut(s)	174
AsuNHI	GCTAGC	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	96
BaeGI	GKGCMC	2 cut(s)	405, 613
BanI	GGYRCC	2 cut(s)	270, 608
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	2 cut(s)	361, 405
BbvI	GCAGC	1 cut(s)	168
BceAI	ACGGC	2 cut(s)	446, 455
BciT130I	CCWGG	1 cut(s)	275
BciVI	GTATCC	1 cut(s)	585
BcnI	CCSGG	1 cut(s)	174
BfaI	CTAG	2 cut(s)	284, 390
BfoI	RGCGCY	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	585
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	6 cut(s)	157, 178, 239, 246, 249, 252
BlsI	GCNGC	6 cut(s)	158, 179, 240, 247, 250, 253
Bme1390I	CCNGG	2 cut(s)	174, 275
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	5 cut(s)	96, 116, 171, 421, 508
BmiI	GGNNCC	3 cut(s)	272, 610, 732
BmrFI	CCNGG	2 cut(s)	174, 275
BmtI	GCTAGC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	1 cut(s)	174
BsaHI	GRCGYC	3 cut(s)	180, 207, 254
BsaJI	CCNNGG	3 cut(s)	28, 151, 456
BsaWI	WCCGGW	1 cut(s)	650
BsaXI	ACNNNNNCTCC	6 cut(s)	92, 122, 333, 336, 363, 366
Bsc4I	CCNNNNNNNGG	6 cut(s)	90, 168, 412, 620, 657, 727
Bse118I	RCCGGY	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	220
BseAI	TCCGGA	1 cut(s)	650
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	3 cut(s)	28, 151, 456
BseLI	CCNNNNNNNGG	6 cut(s)	90, 168, 412, 620, 657, 727
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	3 cut(s)	179, 402, 705
BseRI	GAGGAG	2 cut(s)	151, 357
BseSI	GKGCMC	2 cut(s)	405, 613
BseXI	GCAGC	1 cut(s)	168
BseYI	CCCAGC	1 cut(s)	587
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	5 cut(s)	117, 172, 186, 423, 510
BshNI	GGYRCC	2 cut(s)	270, 608
BsiHKAI	GWGCWC	2 cut(s)	361, 405
BsiSI	CCGG	5 cut(s)	91, 169, 174, 210, 651
BslI	CCNNNNNNNGG	6 cut(s)	90, 168, 412, 620, 657, 727
BsnI	GGCC	5 cut(s)	117, 172, 186, 423, 510
Bsp1286I	GDGCHC	3 cut(s)	361, 405, 613
Bsp13I	TCCGGA	1 cut(s)	650
Bsp143I	GATC	3 cut(s)	372, 623, 628
Bsp19I	CCATGG	1 cut(s)	456
BspANI	GGCC	5 cut(s)	117, 172, 186, 423, 510
BspCNI	CTCAG	3 cut(s)	180, 403, 704
BspEI	TCCGGA	1 cut(s)	650
BspFNI	CGCG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	3 cut(s)	272, 610, 732
BspMI	ACCTGC	1 cut(s)	283
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	631
BspT107I	GGYRCC	2 cut(s)	270, 608
BsrBI	CCGCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	28, 151, 456
BssMI	GATC	3 cut(s)	372, 623, 628
BssNI	GRCGYC	3 cut(s)	180, 207, 254
BssT1I	CCWWGG	2 cut(s)	28, 456
Bst2UI	CCWGG	1 cut(s)	275
Bst6I	CTCTTC	2 cut(s)	305, 735
BstACI	GRCGYC	3 cut(s)	180, 207, 254
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstC8I	GCNNGC	5 cut(s)	211, 243, 391, 522, 700
BstDEI	CTNAG	5 cut(s)	63, 188, 411, 632, 691
BstDSI	CCRYGG	1 cut(s)	456
BstENI	CCTNNNNNAGG	2 cut(s)	410, 618
BstFNI	CGCG	1 cut(s)	268
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	3 cut(s)	375, 626, 631
BstMBI	GATC	3 cut(s)	372, 623, 628
BstMWI	GCNNNNNNNGC	6 cut(s)	183, 215, 251, 289, 461, 704
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	2 cut(s)	172, 273
BstSLI	GKGCMC	2 cut(s)	405, 613
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	628
BstXI	CCANNNNNNTGG	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	628
BsuI	GTATCC	1 cut(s)	585
BsuRI	GGCC	5 cut(s)	117, 172, 186, 423, 510
BtgI	CCRYGG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	5 cut(s)	211, 243, 391, 522, 700
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	5 cut(s)	96, 116, 171, 421, 508
CseI	GACGC	3 cut(s)	169, 215, 243
Csp6I	GTAC	2 cut(s)	271, 428
CviAII	CATG	5 cut(s)	376, 457, 479, 565, 604
CviQI	GTAC	2 cut(s)	271, 428
DdeI	CTNAG	5 cut(s)	63, 188, 411, 632, 691
DpnI	GATC	3 cut(s)	374, 625, 630
DpnII	GATC	3 cut(s)	372, 623, 628
Eam1104I	CTCTTC	2 cut(s)	305, 735
EarI	CTCTTC	2 cut(s)	305, 735
EciI	GGCGGA	2 cut(s)	66, 109
Eco130I	CCWWGG	2 cut(s)	28, 456
Eco47I	GGWCC	1 cut(s)	96
EcoNI	CCTNNNNNAGG	2 cut(s)	410, 618
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	28, 456
ErhI	CCWWGG	2 cut(s)	28, 456
FaeI	CATG	5 cut(s)	379, 460, 482, 568, 607
FalI	AAGNNNNNCTT	4 cut(s)	417, 449, 691, 723
FatI	CATG	5 cut(s)	375, 456, 478, 564, 603
FauI	CCCGC	2 cut(s)	142, 513
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	6 cut(s)	157, 178, 239, 246, 249, 252
Fsp4HI	GCNGC	6 cut(s)	157, 178, 239, 246, 249, 252
FspBI	CTAG	2 cut(s)	284, 390
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	6 cut(s)	157, 178, 239, 246, 249, 252
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	5 cut(s)	117, 172, 186, 423, 510
HapII	CCGG	5 cut(s)	91, 169, 174, 210, 651
HgaI	GACGC	3 cut(s)	169, 215, 243
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	3 cut(s)	180, 207, 254
Hin1II	CATG	5 cut(s)	379, 460, 482, 568, 607
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	4 cut(s)	21, 42, 129, 192
HpaII	CCGG	5 cut(s)	91, 169, 174, 210, 651
Hpy166II	GTNNAC	3 cut(s)	258, 403, 531
Hpy188I	TCNGA	5 cut(s)	41, 412, 618, 628, 735
Hpy188III	TCNNGA	8 cut(s)	18, 232, 307, 367, 479, 542, 651, 693
Hpy8I	GTNNAC	3 cut(s)	258, 403, 531
Hpy99I	CGWCG	3 cut(s)	185, 209, 259
HpyAV	CCTTC	3 cut(s)	175, 211, 217
HpyCH4V	TGCA	2 cut(s)	292, 403
HpyF10VI	GCNNNNNNNGC	6 cut(s)	183, 215, 251, 289, 461, 704
HpyF3I	CTNAG	5 cut(s)	63, 188, 411, 632, 691
Hsp92I	GRCGYC	3 cut(s)	180, 207, 254
Hsp92II	CATG	5 cut(s)	379, 460, 482, 568, 607
HspAI	GCGC	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	650
KpnI	GGTACC	1 cut(s)	274
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	372, 623, 628
LmnI	GCTCC	5 cut(s)	42, 142, 164, 335, 695
Lsp1109I	GCAGC	1 cut(s)	168
MaeI	CTAG	2 cut(s)	284, 390
MalI	GATC	3 cut(s)	374, 625, 630
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	3 cut(s)	372, 623, 628
MboII	GAAGA	6 cut(s)	16, 187, 322, 382, 441, 752
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	3 cut(s)	361, 405, 613
MluCI	AATT	1 cut(s)	676
MroI	TCCGGA	1 cut(s)	650
MroNI	GCCGGC	1 cut(s)	209
MroXI	GAANNNNTTC	2 cut(s)	227, 486
MslI	CAYNNNNRTG	2 cut(s)	111, 398
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	5 cut(s)	91, 169, 174, 210, 651
MspR9I	CCNGG	2 cut(s)	174, 275
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	6 cut(s)	183, 215, 251, 289, 461, 704
NaeI	GCCGGC	1 cut(s)	211
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	456
NdeII	GATC	3 cut(s)	372, 623, 628
NgoMIV	GCCGGC	1 cut(s)	209
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	5 cut(s)	379, 460, 482, 568, 607
NlaIV	GGNNCC	3 cut(s)	272, 610, 732
NmeAIII	GCCGAG	1 cut(s)	132
OliI	CACNNNNGTG	1 cut(s)	398
PagI	TCATGA	1 cut(s)	478
PdiI	GCCGGC	1 cut(s)	211
PdmI	GAANNNNTTC	2 cut(s)	227, 486
PfeI	GAWTC	4 cut(s)	21, 42, 129, 192
PkrI	GCNGC	6 cut(s)	158, 179, 240, 247, 250, 253
PsiI	TTATAA	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	273
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	3 cut(s)	272, 610, 732
PspPI	GGNCC	5 cut(s)	96, 116, 171, 421, 508
PsuI	RGATCY	1 cut(s)	628
RsaI	GTAC	2 cut(s)	272, 429
RsaNI	GTAC	2 cut(s)	271, 428
RseI	CAYNNNNRTG	2 cut(s)	111, 398
SalI	GTCGAC	1 cut(s)	256
SatI	GCNGC	6 cut(s)	157, 178, 239, 246, 249, 252
Sau3AI	GATC	3 cut(s)	372, 623, 628
Sau96I	GGNCC	5 cut(s)	96, 116, 171, 421, 508
ScrFI	CCNGG	2 cut(s)	174, 275
SduI	GDGCHC	3 cut(s)	361, 405, 613
SinI	GGWCC	1 cut(s)	96
SmiMI	CAYNNNNRTG	2 cut(s)	111, 398
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	1 cut(s)	676
SspMI	CTAG	2 cut(s)	284, 390
StyD4I	CCNGG	2 cut(s)	172, 273
StyI	CCWWGG	2 cut(s)	28, 456
TaqI	TCGA	4 cut(s)	19, 204, 231, 257
TasI	AATT	1 cut(s)	676
TauI	GCSGC	5 cut(s)	180, 241, 248, 251, 254
TfiI	GAWTC	4 cut(s)	21, 42, 129, 192
TseI	GCWGC	1 cut(s)	156
TspDTI	ATGAA	2 cut(s)	467, 495
VneI	GTGCAC	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	96
XagI	CCTNNNNNAGG	2 cut(s)	410, 618
XapI	RAATTY	1 cut(s)	676
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	257
XmnI	GAANNNNTTC	2 cut(s)	227, 486
XspI	CTAG	2 cut(s)	284, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.