Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010231

Physical Location & Seq

Genomic Coordinates Reverse (-)

17343774 .. 17345637

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTCAAAACCCTCGTCTGGGATCATCCAAGGCCTGCTTAGATTCCACCGCAATCAAATCTCAAAACCCTCGTCTCCGTCTCCGCCTCCGTTCTCCACCGCCAGGAGGAGCTACCACTCCACCAATGGGCCTCCTCCCCAATTCCCCTCTCACCCAAAACCAGTTCCCGGCGGCGGTGGCGGAGGCTACTCCGGGCCGGGACTCGGTTACGGCCTGGGCATGAGGTTCTTCTCCGTCAAGCCATCGAATTTCAGCAAAATCGATGCAAAGAAGGTGTTTGATAAGCCGCTCTCCGCGGTGTCATCGGCTTTCTCGCGGTATCAGGGGGCCATTGGGTTGCAGATTGAGGCGTTCTGGAAGAGGAACAATCTGGTGCTGTTGGGAATTGGCGCAGTGTTGGTGTGTGCTCTGCTGTGGCGGCTCATGTTTGGGATTGCTAGCACCTTCATTGGACTCTCTGAAGGCATGGCCAAGTATGGCTTCCTCGCCCTTTCTACCGCCATTGTCGCATTCGCTGGCCTTCACATCCGCTCGAGATTCACAATCAATCCTGATAAAGTTTATAGAATTGCCATGAGGAAGCTTAATACATCTGCTGGGATTCTCGAGGTTATGGGTGCTCCTCTCTCTGGATCAGATCTAAGAGCCTATGTAATGTCCGGAGGTGGGGTTACACTGAAGAAGTTCAAGCCAACTTTTAGGAGCAAGCGGTGTTTCCTCATTTTCCCTGTGCGAGGTTCTGAGAGGAAGGGTCTGGTTAGTGTAGAAGTAAAGAAGAAAAAGGGCCAGTATGATATGAAGCTACTGGCAGTTGACATTCCCATGGCATCAGGACCTGACCAGCGTTTGTTCCTGATTGGCGATGAAGAAGAGTACAAAGTTGGCGGTGGACTTATAGCTGAGCTGAGAGATCCGGTTGTGAAAGCAATGGCTGCATCCAAGGAATTCGATAATCTTGACCAGATTGAAGAAGAGGAGGATGCTGAAAAAGCACTTCAGGAGGCCGAAAGAAAGCACCATGAAGAAATTGAAAAGCTTGAAAAGACCCCGTCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

38.42

Weight (kDa)

9.77

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40800 AT2G40800 AT3G56430
fragaria_vesca	FvH4_7g26230
malus_domestica	MD01G1171000.v1.1 MD07G1237400.v1.1
prunus_persica	Prupe.2G266500_v2.0.a1 Prupe.2G266500_v2.0.a1 Prupe.2G266500_v2.0.a1
pyrus_communis	pycom01g18320 pycom07g21370
rosa_chinensis	RchiOBHm_Chr1g0372681
rosa_laevigata	RLG00000026880
rosa_multiflora	Rmu_ssc0000419.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284760
rosa_rugosa	Rorug01G0373800
rosa_samantha	Rh1AG382300 Rh1BG345700 Rh1CG359100 Rh1DG376900
rosa_wichuraiana	Rw1G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	289, 531
AccII	CGCG	2 cut(s)	296, 316
AccIII	TCCGGA	1 cut(s)	659
AclWI	GGATC	3 cut(s)	29, 640, 905
AcoI	YGGCCR	1 cut(s)	468
AcsI	RAATTY	2 cut(s)	247, 944
AcuI	CTGAAG	3 cut(s)	480, 698, 980
AfaI	GTAC	1 cut(s)	875
AgsI	TTSAA	4 cut(s)	688, 968, 1031, 1040
AjnI	CCWGG	2 cut(s)	101, 213
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AluBI	AGCT	6 cut(s)	111, 583, 802, 899, 904, 1036
AluI	AGCT	6 cut(s)	111, 583, 802, 899, 904, 1036
Alw21I	GWGCWC	2 cut(s)	409, 622
Alw26I	GTCTC	2 cut(s)	78, 84
AlwI	GGATC	3 cut(s)	29, 640, 905
AlwNI	CAGNNNCTG	1 cut(s)	836
Ama87I	CYCGRG	2 cut(s)	532, 605
Aor13HI	TCCGGA	1 cut(s)	659
AoxI	GGCC	9 cut(s)	31, 128, 194, 211, 327, 468, 517, 784, 1002
ApeKI	GCWGC	1 cut(s)	932
ApoI	RAATTY	2 cut(s)	247, 944
ArsI	GACNNNNNNTTYG	3 cut(s)	31, 56, 88
Asp700I	GAANNNNTTC	1 cut(s)	683
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	5 cut(s)	128, 194, 327, 784, 833
AsuC2I	CCSGG	3 cut(s)	168, 193, 198
AsuHPI	GGTGA	1 cut(s)	143
AsuNHI	GCTAGC	1 cut(s)	437
AvaI	CYCGRG	2 cut(s)	532, 605
AvaII	GGWCC	1 cut(s)	833
BalI	TGGCCA	1 cut(s)	470
Bbv12I	GWGCWC	2 cut(s)	409, 622
BbvI	GCAGC	1 cut(s)	919
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	2 cut(s)	103, 215
BcnI	CCSGG	3 cut(s)	168, 193, 198
BcoDI	GTCTC	2 cut(s)	78, 84
BfaI	CTAG	1 cut(s)	438
BglII	AGATCT	1 cut(s)	637
BisI	GCNGC	4 cut(s)	172, 287, 419, 933
BlpI	GCTNAGC	1 cut(s)	900
BlsI	GCNGC	4 cut(s)	173, 288, 420, 934
Bme1390I	CCNGG	5 cut(s)	103, 168, 193, 198, 215
Bme18I	GGWCC	1 cut(s)	833
BmeT110I	CYCGRG	2 cut(s)	532, 605
BmgT120I	GGNCC	5 cut(s)	128, 194, 327, 784, 833
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	5 cut(s)	103, 168, 193, 198, 215
BmsI	GCATC	4 cut(s)	253, 836, 944, 970
BmtI	GCTAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	900
BpuMI	CCSGG	3 cut(s)	168, 193, 198
Bsa29I	ATCGAT	1 cut(s)	261
BsaJI	CCNNGG	5 cut(s)	28, 214, 294, 822, 939
BsaWI	WCCGGW	2 cut(s)	659, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	654, 684
Bse1I	ACTGG	3 cut(s)	161, 787, 810
Bse3DI	GCAATG	1 cut(s)	933
BseAI	TCCGGA	1 cut(s)	659
BseBI	CCWGG	2 cut(s)	103, 215
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	5 cut(s)	28, 214, 294, 822, 939
BseGI	GGATG	4 cut(s)	24, 525, 935, 985
BseMI	GCAATG	1 cut(s)	933
BseMII	CTCAG	3 cut(s)	732, 891, 896
BseNI	ACTGG	3 cut(s)	161, 787, 810
BseRI	GAGGAG	4 cut(s)	121, 123, 612, 989
BseXI	GCAGC	1 cut(s)	919
BseYI	CCCAGC	1 cut(s)	596
Bsh1236I	CGCG	2 cut(s)	296, 316
BshFI	GGCC	9 cut(s)	33, 130, 196, 213, 329, 470, 519, 786, 1004
BshVI	ATCGAT	1 cut(s)	261
BsiHKAI	GWGCWC	2 cut(s)	409, 622
BsiHKCI	CYCGRG	2 cut(s)	532, 605
BsiSI	CCGG	5 cut(s)	168, 192, 197, 660, 914
BslFI	GGGAC	1 cut(s)	213
BsmAI	GTCTC	2 cut(s)	78, 84
BsmBI	CGTCTC	2 cut(s)	78, 84
BsmFI	GGGAC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	9 cut(s)	33, 130, 196, 213, 329, 470, 519, 786, 1004
BsoBI	CYCGRG	2 cut(s)	532, 605
Bsp1286I	GDGCHC	2 cut(s)	409, 622
Bsp13I	TCCGGA	1 cut(s)	659
Bsp143I	GATC	4 cut(s)	21, 632, 637, 910
Bsp1720I	GCTNAGC	1 cut(s)	900
Bsp19I	CCATGG	1 cut(s)	822
BspANI	GGCC	9 cut(s)	33, 130, 196, 213, 329, 470, 519, 786, 1004
BspCNI	CTCAG	3 cut(s)	733, 892, 897
BspDI	ATCGAT	1 cut(s)	261
BspEI	TCCGGA	1 cut(s)	659
BspFNI	CGCG	2 cut(s)	296, 316
BspLI	GGNNCC	1 cut(s)	328
BspOI	GCTAGC	1 cut(s)	441
BspPI	GGATC	3 cut(s)	29, 640, 905
BsrBI	CCGCTC	2 cut(s)	289, 531
BsrDI	GCAATG	1 cut(s)	933
BsrI	ACTGG	3 cut(s)	161, 787, 810
BssECI	CCNNGG	5 cut(s)	28, 214, 294, 822, 939
BssMI	GATC	4 cut(s)	21, 632, 637, 910
BssT1I	CCWWGG	3 cut(s)	28, 822, 939
Bst2UI	CCWGG	2 cut(s)	103, 215
Bst4CI	ACNGT	1 cut(s)	1056
Bst6I	CTCTTC	3 cut(s)	353, 864, 966
BstAPI	GCANNNNNTGC	1 cut(s)	932
BstC8I	GCNNGC	4 cut(s)	35, 439, 517, 707
BstDEI	CTNAG	5 cut(s)	38, 641, 741, 900, 905
BstDSI	CCRYGG	2 cut(s)	294, 822
BstENI	CCTNNNNNAGG	1 cut(s)	732
BstF5I	GGATG	4 cut(s)	24, 525, 935, 985
BstFNI	CGCG	2 cut(s)	296, 316
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	4 cut(s)	24, 635, 640, 913
BstMAI	GTCTC	2 cut(s)	78, 84
BstMBI	GATC	4 cut(s)	21, 632, 637, 910
BstMWI	GCNNNNNNNGC	5 cut(s)	177, 418, 506, 932, 989
BstNI	CCWGG	2 cut(s)	103, 215
BstSCI	CCNGG	5 cut(s)	101, 166, 191, 196, 213
BstUI	CGCG	2 cut(s)	296, 316
BstV1I	GCAGC	1 cut(s)	919
BstX2I	RGATCY	2 cut(s)	637, 910
BstYI	RGATCY	2 cut(s)	637, 910
Bsu15I	ATCGAT	1 cut(s)	261
BsuRI	GGCC	9 cut(s)	33, 130, 196, 213, 329, 470, 519, 786, 1004
BsuTUI	ATCGAT	1 cut(s)	261
BtgI	CCRYGG	2 cut(s)	294, 822
BtgZI	GCGATG	1 cut(s)	876
BtsCI	GGATG	4 cut(s)	24, 525, 935, 985
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	399, 674
Cac8I	GCNNGC	4 cut(s)	35, 439, 517, 707
CaiI	CAGNNNCTG	1 cut(s)	836
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	5 cut(s)	128, 194, 327, 784, 833
Cfr42I	CCGCGG	1 cut(s)	297
ClaI	ATCGAT	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	874
CviAII	CATG	6 cut(s)	220, 424, 466, 574, 823, 1019
CviQI	GTAC	1 cut(s)	874
DdeI	CTNAG	5 cut(s)	38, 641, 741, 900, 905
DpnI	GATC	4 cut(s)	23, 634, 639, 912
DpnII	GATC	4 cut(s)	21, 632, 637, 910
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	3 cut(s)	353, 864, 966
EarI	CTCTTC	3 cut(s)	353, 864, 966
EciI	GGCGGA	2 cut(s)	72, 195
Eco130I	CCWWGG	3 cut(s)	28, 822, 939
Eco147I	AGGCCT	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	833
Eco57I	CTGAAG	3 cut(s)	480, 698, 980
Eco88I	CYCGRG	2 cut(s)	532, 605
EcoNI	CCTNNNNNAGG	1 cut(s)	732
EcoO109I	RGGNCCY	1 cut(s)	833
EcoRI	GAATTC	1 cut(s)	944
EcoRII	CCWGG	2 cut(s)	101, 213
EcoT14I	CCWWGG	3 cut(s)	28, 822, 939
ErhI	CCWWGG	3 cut(s)	28, 822, 939
Esp3I	CGTCTC	2 cut(s)	78, 84
FaeI	CATG	6 cut(s)	223, 427, 469, 577, 826, 1022
FalI	AAGNNNNNCTT	4 cut(s)	21, 53, 464, 496
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	6 cut(s)	219, 423, 465, 573, 822, 1018
Fnu4HI	GCNGC	4 cut(s)	172, 287, 419, 933
FokI	GGATG	4 cut(s)	11, 512, 922, 992
Fsp4HI	GCNGC	4 cut(s)	172, 287, 419, 933
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	4 cut(s)	172, 287, 419, 933
GsaI	CCCAGC	1 cut(s)	600
HaeIII	GGCC	9 cut(s)	33, 130, 196, 213, 329, 470, 519, 786, 1004
HapII	CCGG	5 cut(s)	168, 192, 197, 660, 914
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	6 cut(s)	223, 427, 469, 577, 826, 1022
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HindIII	AAGCTT	2 cut(s)	581, 1034
HinfI	GANTC	5 cut(s)	42, 201, 453, 537, 601
HpaII	CCGG	5 cut(s)	168, 192, 197, 660, 914
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	2 cut(s)	814, 890
Hpy188I	TCNGA	3 cut(s)	460, 637, 742
Hpy8I	GTNNAC	2 cut(s)	814, 890
HpyAV	CCTTC	5 cut(s)	265, 454, 455, 530, 742
HpyCH4III	ACNGT	1 cut(s)	1056
HpyCH4V	TGCA	3 cut(s)	266, 340, 935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	177, 418, 506, 932, 989
HpyF3I	CTNAG	5 cut(s)	38, 641, 741, 900, 905
Hsp92II	CATG	6 cut(s)	223, 427, 469, 577, 826, 1022
HspAI	GCGC	1 cut(s)	390
Kpn2I	TCCGGA	1 cut(s)	659
KspI	CCGCGG	1 cut(s)	297
Kzo9I	GATC	4 cut(s)	21, 632, 637, 910
LmnI	GCTCC	3 cut(s)	108, 625, 702
Lsp1109I	GCAGC	1 cut(s)	919
LweI	GCATC	4 cut(s)	253, 836, 944, 970
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	3 cut(s)	206, 670, 1050
MalI	GATC	4 cut(s)	23, 634, 639, 912
MbiI	CCGCTC	2 cut(s)	289, 531
MboI	GATC	4 cut(s)	21, 632, 637, 910
MboII	GAAGA	9 cut(s)	220, 370, 691, 787, 878, 881, 980, 983, 1034
MflI	RGATCY	2 cut(s)	637, 910
MhlI	GDGCHC	2 cut(s)	409, 622
MlsI	TGGCCA	1 cut(s)	470
MluCI	AATT	6 cut(s)	140, 247, 384, 567, 944, 1026
MluNI	TGGCCA	1 cut(s)	470
MlyI	GAGTC	2 cut(s)	195, 447
Mox20I	TGGCCA	1 cut(s)	470
MroI	TCCGGA	1 cut(s)	659
MroXI	GAANNNNTTC	1 cut(s)	683
MscI	TGGCCA	1 cut(s)	470
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	1 cut(s)	821
Msp20I	TGGCCA	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	5 cut(s)	168, 192, 197, 660, 914
MspR9I	CCNGG	5 cut(s)	103, 168, 193, 198, 215
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	2 cut(s)	103, 215
MvnI	CGCG	2 cut(s)	296, 316
MwoI	GCNNNNNNNGC	5 cut(s)	177, 418, 506, 932, 989
NciI	CCSGG	3 cut(s)	168, 193, 198
NcoI	CCATGG	1 cut(s)	822
NdeII	GATC	4 cut(s)	21, 632, 637, 910
NheI	GCTAGC	1 cut(s)	437
NlaIII	CATG	6 cut(s)	223, 427, 469, 577, 826, 1022
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	1050
PaeR7I	CTCGAG	2 cut(s)	532, 605
PceI	AGGCCT	1 cut(s)	33
PctI	GAATGC	1 cut(s)	509
PdmI	GAANNNNTTC	1 cut(s)	683
PfeI	GAWTC	3 cut(s)	42, 537, 601
PflFI	GACNNNGTC	1 cut(s)	1048
PkrI	GCNGC	4 cut(s)	173, 288, 420, 934
PleI	GAGTC	2 cut(s)	195, 447
PpsI	GAGTC	2 cut(s)	195, 447
PpuMI	RGGWCCY	1 cut(s)	833
Psp5II	RGGWCCY	1 cut(s)	833
Psp6I	CCWGG	2 cut(s)	101, 213
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	2 cut(s)	101, 213
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	5 cut(s)	128, 194, 327, 784, 833
PspPPI	RGGWCCY	1 cut(s)	833
PstNI	CAGNNNCTG	1 cut(s)	836
PsuI	RGATCY	2 cut(s)	637, 910
PsyI	GACNNNGTC	1 cut(s)	1048
RsaI	GTAC	1 cut(s)	875
RsaNI	GTAC	1 cut(s)	874
RseI	CAYNNNNRTG	1 cut(s)	821
SacII	CCGCGG	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	4 cut(s)	172, 287, 419, 933
Sau3AI	GATC	4 cut(s)	21, 632, 637, 910
Sau96I	GGNCC	5 cut(s)	128, 194, 327, 784, 833
SchI	GAGTC	2 cut(s)	195, 447
ScrFI	CCNGG	5 cut(s)	103, 168, 193, 198, 215
SduI	GDGCHC	2 cut(s)	409, 622
SfaNI	GCATC	4 cut(s)	253, 836, 944, 970
Sfr274I	CTCGAG	2 cut(s)	532, 605
Sfr303I	CCGCGG	1 cut(s)	297
SgrBI	CCGCGG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	833
SlaI	CTCGAG	2 cut(s)	532, 605
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	2 cut(s)	532, 605
SmoI	CTYRAG	2 cut(s)	532, 605
Sse9I	AATT	6 cut(s)	140, 247, 384, 567, 944, 1026
SseBI	AGGCCT	1 cut(s)	33
SspMI	CTAG	1 cut(s)	438
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	5 cut(s)	101, 166, 191, 196, 213
StyI	CCWWGG	3 cut(s)	28, 822, 939
TaaI	ACNGT	1 cut(s)	1056
TaqI	TCGA	5 cut(s)	245, 261, 533, 606, 948
TasI	AATT	6 cut(s)	140, 247, 384, 567, 944, 1026
TatI	WGTACW	1 cut(s)	873
TauI	GCSGC	3 cut(s)	174, 289, 421
TfiI	GAWTC	3 cut(s)	42, 537, 601
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	2 cut(s)	399, 681
TseFI	GTSAC	1 cut(s)	1050
TseI	GCWGC	1 cut(s)	932
Tsp45I	GTSAC	1 cut(s)	1050
TspDTI	ATGAA	4 cut(s)	436, 812, 879, 1035
TspGWI	ACGGA	3 cut(s)	66, 78, 223
TspRI	CASTG	2 cut(s)	399, 681
Tth111I	GACNNNGTC	1 cut(s)	1048
VpaK11BI	GGWCC	1 cut(s)	833
XagI	CCTNNNNNAGG	1 cut(s)	732
XapI	RAATTY	2 cut(s)	247, 944
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XhoI	CTCGAG	2 cut(s)	532, 605
XmnI	GAANNNNTTC	1 cut(s)	683
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.