RchiOBHm_Chr1g0372681

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010231
Physical Location & Seq
Reverse (-)
61268419 .. 61272674
4256 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59665

Sequence Viewer

Length: 1020 bp
ATGTCAAAACCCTCATCTCGAATCTTCCAAGGTCTGCTCCGATTCCACCGCCACCAAATCTCTAAGCCCCCAACTCCGCCCACCACTTTCCGGCGGACGTACCACCACTCCAATGGCCCTCTCCCCCGATTCCCCGCCCCCCCAAAACCCCTCGGCAGCTCCTCCTTCCGGCCCGGCGGCGTCGGCCTGAGATTCTTCTCCTTCGACGCCGGCAATGCCAAGAAGGTGTTCGAGAAGCCGCTGGCGGCGGCGGCGTCGACTTTCTCGCGGTACCAGGAGGCGCTGGGGTTGCAGGTTGAGGCGTTCTGGAAGAGGAACAATCTGGTGCTGGTGGGAGCTGGGGGAGTTGTGGTGTGTGCTCTGCTCTGGAAGATCATGTTTGGGATTGCTAGCACGTTTGTGCACCTCTCTGAGGGAATGGCCAAGTATGGCTTTTTAGCTCTGTCTTCTGCCATGGTTGCTTTCGCCGGCCTTTATCTGCGGGCAAGGTTCACAATAAATCCTGATAAAGTATATAGGATTGCCATGACAAAGCTAAATACATCTGCTGGGATTCTTGAGGTCATGGGTGCCCCTCTAACAGGATCTGATCTAAGAGCCTATATAATGTCCGGAGGTGGGTTTCAACTGAAAAAATTCAAGCCAACTCTCAGGAGCAAGCGGTGCTTCCTCATTTTCCCAATACGAGGTTCCGAAAGAAGAGGTCTGGTCAATGTTGAAGTAAAGAAGAAGAAAGGCCAGTATGATATGAAGCTATTGGCAGTTGACATTCCCATGGCATCGGGACCTGATCAACGGTTATTCCTGATTGGGGATGAAGAAGAATACAAAGTTGGTGGTGGACTAATATCTGAGCTGAGAGATCCTGTTGTGAAAGCAATGGCTGCAGAGAAGATATTTGATAATCTTGATCAGATTGAAGACGAGGAGGATGCTGAAAAAGAACTTCTGGAGGCAGAAAGAAAGCATCGTGAAGAAATTGAGAAGCTTGAAAAAGATGGGAAAGATGGGACACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

37.66

Weight (kDa)

9.66

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 283
Acc65I GGTACC 1 cut(s) 270
AccB1I GGYRCC 2 cut(s) 270, 569
AccI GTMKAC 1 cut(s) 257
AccII CGCG 1 cut(s) 268
AccIII TCCGGA 1 cut(s) 611
AclWI GGATC 2 cut(s) 592, 857
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 1 cut(s) 635
AcyI GRCGYC 3 cut(s) 180, 207, 254
AfaI GTAC 2 cut(s) 101, 272
AfiI CCNNNNNNNGG 7 cut(s) 90, 168, 412, 581, 618, 686, 811
AgsI TTSAA 5 cut(s) 626, 640, 719, 920, 992
AjnI CCWGG 1 cut(s) 273
AjuI GAANNNNNNNTTGG 6 cut(s) 212, 244, 673, 705, 816, 848
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 7 cut(s) 159, 338, 440, 535, 754, 856, 988
AluI AGCT 7 cut(s) 159, 338, 440, 535, 754, 856, 988
Alw21I GWGCWC 2 cut(s) 361, 405
Alw44I GTGCAC 1 cut(s) 401
AlwI GGATC 2 cut(s) 592, 857
AlwNI CAGNNNCTG 1 cut(s) 587
Aor13HI TCCGGA 1 cut(s) 611
AoxI GGCC 6 cut(s) 115, 170, 184, 420, 469, 736
ApaLI GTGCAC 1 cut(s) 401
ApeKI GCWGC 2 cut(s) 156, 884
ApoI RAATTY 1 cut(s) 635
Asp700I GAANNNNTTC 2 cut(s) 227, 635
Asp718I GGTACC 1 cut(s) 270
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 3 cut(s) 116, 171, 785
AsuC2I CCSGG 1 cut(s) 174
AsuNHI GCTAGC 1 cut(s) 389
AvaII GGWCC 1 cut(s) 785
BaeGI GKGCMC 2 cut(s) 405, 574
BalI TGGCCA 1 cut(s) 422
BanI GGYRCC 2 cut(s) 270, 569
BbsI GAAGAC 2 cut(s) 438, 927
Bbv12I GWGCWC 2 cut(s) 361, 405
BbvI GCAGC 2 cut(s) 168, 871
BccI CCATC 2 cut(s) 992, 1001
BcgI CGANNNNNNTGC 2 cut(s) 914, 948
BciT130I CCWGG 1 cut(s) 275
BclI TGATCA 2 cut(s) 790, 910
BcnI CCSGG 1 cut(s) 174
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 1 cut(s) 885
BfoI RGCGCY 1 cut(s) 284
BfuAI ACCTGC 1 cut(s) 283
BisI GCNGC 7 cut(s) 157, 178, 239, 246, 249, 252, 885
BlsI GCNGC 7 cut(s) 158, 179, 240, 247, 250, 253, 886
Bme1390I CCNGG 2 cut(s) 174, 275
Bme18I GGWCC 1 cut(s) 785
BmgT120I GGNCC 3 cut(s) 116, 171, 785
BmiI GGNNCC 4 cut(s) 272, 571, 691, 786
BmrFI CCNGG 2 cut(s) 174, 275
BmsI GCATC 3 cut(s) 788, 922, 976
BmtI GCTAGC 1 cut(s) 393
BpiI GAAGAC 2 cut(s) 438, 927
BpmI CTGGAG 1 cut(s) 971
BpuEI CTTGAG 1 cut(s) 578
BpuMI CCSGG 1 cut(s) 174
BsaHI GRCGYC 3 cut(s) 180, 207, 254
BsaJI CCNNGG 4 cut(s) 28, 151, 453, 774
BsaWI WCCGGW 1 cut(s) 611
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 336, 366
Bsc4I CCNNNNNNNGG 7 cut(s) 90, 168, 412, 581, 618, 686, 811
Bse118I RCCGGY 2 cut(s) 209, 467
Bse1I ACTGG 1 cut(s) 739
Bse3DI GCAATG 2 cut(s) 220, 885
BseAI TCCGGA 1 cut(s) 611
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 4 cut(s) 28, 151, 453, 774
BseGI GGATG 2 cut(s) 820, 937
BseLI CCNNNNNNNGG 7 cut(s) 90, 168, 412, 581, 618, 686, 811
BseMI GCAATG 2 cut(s) 220, 885
BseMII CTCAG 5 cut(s) 179, 402, 664, 843, 848
BseNI ACTGG 1 cut(s) 739
BseRI GAGGAG 2 cut(s) 151, 941
BseSI GKGCMC 2 cut(s) 405, 574
BseXI GCAGC 2 cut(s) 168, 871
BseYI CCCAGC 3 cut(s) 283, 338, 548
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 6 cut(s) 117, 172, 186, 422, 471, 738
BshNI GGYRCC 2 cut(s) 270, 569
BsiHKAI GWGCWC 2 cut(s) 361, 405
BsiSI CCGG 6 cut(s) 91, 169, 174, 210, 468, 612
BslFI GGGAC 1 cut(s) 798
BslI CCNNNNNNNGG 7 cut(s) 90, 168, 412, 581, 618, 686, 811
BsmFI GGGAC 1 cut(s) 798
BsnI GGCC 6 cut(s) 117, 172, 186, 422, 471, 738
Bsp1286I GDGCHC 3 cut(s) 361, 405, 574
Bsp13I TCCGGA 1 cut(s) 611
Bsp143I GATC 6 cut(s) 372, 584, 589, 790, 862, 910
Bsp19I CCATGG 2 cut(s) 453, 774
BspANI GGCC 6 cut(s) 117, 172, 186, 422, 471, 738
BspCNI CTCAG 5 cut(s) 180, 403, 663, 844, 849
BspEI TCCGGA 1 cut(s) 611
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 4 cut(s) 272, 571, 691, 786
BspMAI CTGCAG 1 cut(s) 889
BspMI ACCTGC 1 cut(s) 283
BspOI GCTAGC 1 cut(s) 393
BspPI GGATC 2 cut(s) 592, 857
BspT107I GGYRCC 2 cut(s) 270, 569
BsrDI GCAATG 2 cut(s) 220, 885
BsrFI RCCGGY 2 cut(s) 209, 467
BsrI ACTGG 1 cut(s) 739
BssAI RCCGGY 2 cut(s) 209, 467
BssECI CCNNGG 4 cut(s) 28, 151, 453, 774
BssMI GATC 6 cut(s) 372, 584, 589, 790, 862, 910
BssNI GRCGYC 3 cut(s) 180, 207, 254
BssT1I CCWWGG 3 cut(s) 28, 453, 774
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 798, 1017
Bst6I CTCTTC 2 cut(s) 305, 694
BstACI GRCGYC 3 cut(s) 180, 207, 254
BstAPI GCANNNNNTGC 2 cut(s) 663, 884
BstC8I GCNNGC 6 cut(s) 211, 243, 391, 469, 483, 659
BstDEI CTNAG 7 cut(s) 63, 188, 411, 593, 650, 852, 857
BstDSI CCRYGG 2 cut(s) 453, 774
BstENI CCTNNNNNAGG 2 cut(s) 410, 579
BstF5I GGATG 2 cut(s) 820, 937
BstFNI CGCG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 6 cut(s) 375, 587, 592, 793, 865, 913
BstMBI GATC 6 cut(s) 372, 584, 589, 790, 862, 910
BstMWI GCNNNNNNNGC 7 cut(s) 183, 215, 251, 289, 458, 663, 884
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 172, 273
BstSFI CTRYAG 1 cut(s) 885
BstSLI GKGCMC 2 cut(s) 405, 574
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 168, 871
BstV2I GAAGAC 2 cut(s) 438, 927
BstX2I RGATCY 2 cut(s) 584, 862
BstXI CCANNNNNNTGG 1 cut(s) 113
BstYI RGATCY 2 cut(s) 584, 862
BsuRI GGCC 6 cut(s) 117, 172, 186, 422, 471, 738
BtgI CCRYGG 2 cut(s) 453, 774
BtsCI GGATG 2 cut(s) 820, 937
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 6 cut(s) 211, 243, 391, 469, 483, 659
CaiI CAGNNNCTG 1 cut(s) 587
CfoI GCGC 1 cut(s) 283
Cfr10I RCCGGY 2 cut(s) 209, 467
Cfr13I GGNCC 3 cut(s) 116, 171, 785
CseI GACGC 3 cut(s) 169, 215, 243
Csp6I GTAC 2 cut(s) 100, 271
CspCI CAANNNNNGTGG 2 cut(s) 817, 852
CviAII CATG 5 cut(s) 376, 454, 526, 565, 775
CviQI GTAC 2 cut(s) 100, 271
DdeI CTNAG 7 cut(s) 63, 188, 411, 593, 650, 852, 857
DpnI GATC 6 cut(s) 374, 586, 591, 792, 864, 912
DpnII GATC 6 cut(s) 372, 584, 589, 790, 862, 910
EaeI YGGCCR 1 cut(s) 420
Eam1104I CTCTTC 2 cut(s) 305, 694
EarI CTCTTC 2 cut(s) 305, 694
EciI GGCGGA 2 cut(s) 66, 109
Eco130I CCWWGG 3 cut(s) 28, 453, 774
Eco47I GGWCC 1 cut(s) 785
EcoNI CCTNNNNNAGG 2 cut(s) 410, 579
EcoO109I RGGNCCY 1 cut(s) 785
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 3 cut(s) 28, 453, 774
ErhI CCWWGG 3 cut(s) 28, 453, 774
FaeI CATG 5 cut(s) 379, 457, 529, 568, 778
FalI AAGNNNNNCTT 4 cut(s) 416, 448, 650, 682
FaqI GGGAC 1 cut(s) 798
FatI CATG 5 cut(s) 375, 453, 525, 564, 774
FauI CCCGC 2 cut(s) 142, 474
FbaI TGATCA 2 cut(s) 790, 910
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 7 cut(s) 157, 178, 239, 246, 249, 252, 885
FokI GGATG 2 cut(s) 827, 944
Fsp4HI GCNGC 7 cut(s) 157, 178, 239, 246, 249, 252, 885
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 282
GluI GCNGC 7 cut(s) 157, 178, 239, 246, 249, 252, 885
GsaI CCCAGC 3 cut(s) 287, 342, 552
GsuI CTGGAG 1 cut(s) 971
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 6 cut(s) 117, 172, 186, 422, 471, 738
HapII CCGG 6 cut(s) 91, 169, 174, 210, 468, 612
HgaI GACGC 3 cut(s) 169, 215, 243
HhaI GCGC 1 cut(s) 283
Hin1I GRCGYC 3 cut(s) 180, 207, 254
Hin1II CATG 5 cut(s) 379, 457, 529, 568, 778
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 2 cut(s) 258, 766
HindII GTYRAC 2 cut(s) 258, 766
HindIII AAGCTT 1 cut(s) 986
HinfI GANTC 5 cut(s) 21, 42, 129, 192, 553
HpaII CCGG 6 cut(s) 91, 169, 174, 210, 468, 612
Hpy166II GTNNAC 5 cut(s) 258, 403, 492, 766, 842
Hpy188I TCNGA 6 cut(s) 41, 412, 589, 694, 853, 915
Hpy8I GTNNAC 5 cut(s) 258, 403, 492, 766, 842
Hpy99I CGWCG 3 cut(s) 185, 209, 259
HpyAV CCTTC 3 cut(s) 175, 211, 217
HpyCH4III ACNGT 2 cut(s) 798, 1017
HpyCH4IV ACGT 2 cut(s) 98, 395
HpyCH4V TGCA 3 cut(s) 292, 403, 887
HpyF10VI GCNNNNNNNGC 7 cut(s) 183, 215, 251, 289, 458, 663, 884
HpyF3I CTNAG 7 cut(s) 63, 188, 411, 593, 650, 852, 857
HpySE526I ACGT 2 cut(s) 98, 395
Hsp92I GRCGYC 3 cut(s) 180, 207, 254
Hsp92II CATG 5 cut(s) 379, 457, 529, 568, 778
HspAI GCGC 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 611
KpnI GGTACC 1 cut(s) 274
KroI GCCGGC 2 cut(s) 209, 467
KroNI GCCGGC 2 cut(s) 211, 469
Ksp22I TGATCA 2 cut(s) 790, 910
Kzo9I GATC 6 cut(s) 372, 584, 589, 790, 862, 910
LmnI GCTCC 4 cut(s) 42, 164, 335, 654
Lsp1109I GCAGC 2 cut(s) 168, 871
LweI GCATC 3 cut(s) 788, 922, 976
MaeI CTAG 1 cut(s) 390
MaeII ACGT 2 cut(s) 98, 395
MalI GATC 6 cut(s) 374, 586, 591, 792, 864, 912
MboI GATC 6 cut(s) 372, 584, 589, 790, 862, 910
MflI RGATCY 2 cut(s) 584, 862
MhlI GDGCHC 3 cut(s) 361, 405, 574
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 2 cut(s) 635, 978
MluNI TGGCCA 1 cut(s) 422
Mox20I TGGCCA 1 cut(s) 422
MroI TCCGGA 1 cut(s) 611
MroNI GCCGGC 2 cut(s) 209, 467
MroXI GAANNNNTTC 2 cut(s) 227, 635
MscI TGGCCA 1 cut(s) 422
MslI CAYNNNNRTG 3 cut(s) 111, 398, 773
Msp20I TGGCCA 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 6 cut(s) 91, 169, 174, 210, 468, 612
MspR9I CCNGG 2 cut(s) 174, 275
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 7 cut(s) 183, 215, 251, 289, 458, 663, 884
NaeI GCCGGC 2 cut(s) 211, 469
NciI CCSGG 1 cut(s) 174
NcoI CCATGG 2 cut(s) 453, 774
NdeII GATC 6 cut(s) 372, 584, 589, 790, 862, 910
NgoMIV GCCGGC 2 cut(s) 209, 467
NheI GCTAGC 1 cut(s) 389
NlaIII CATG 5 cut(s) 379, 457, 529, 568, 778
NlaIV GGNNCC 4 cut(s) 272, 571, 691, 786
NmeAIII GCCGAG 1 cut(s) 132
OliI CACNNNNGTG 1 cut(s) 398
PdiI GCCGGC 2 cut(s) 211, 469
PdmI GAANNNNTTC 2 cut(s) 227, 635
PfeI GAWTC 5 cut(s) 21, 42, 129, 192, 553
PkrI GCNGC 7 cut(s) 158, 179, 240, 247, 250, 253, 886
PpuMI RGGWCCY 1 cut(s) 785
Psp5II RGGWCCY 1 cut(s) 785
Psp6I CCWGG 1 cut(s) 273
PspFI CCCAGC 3 cut(s) 283, 338, 548
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 4 cut(s) 272, 571, 691, 786
PspPI GGNCC 3 cut(s) 116, 171, 785
PspPPI RGGWCCY 1 cut(s) 785
PstI CTGCAG 1 cut(s) 889
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 2 cut(s) 584, 862
RsaI GTAC 2 cut(s) 101, 272
RsaNI GTAC 2 cut(s) 100, 271
RseI CAYNNNNRTG 3 cut(s) 111, 398, 773
SalI GTCGAC 1 cut(s) 256
SatI GCNGC 7 cut(s) 157, 178, 239, 246, 249, 252, 885
Sau3AI GATC 6 cut(s) 372, 584, 589, 790, 862, 910
Sau96I GGNCC 3 cut(s) 116, 171, 785
ScrFI CCNGG 2 cut(s) 174, 275
SduI GDGCHC 3 cut(s) 361, 405, 574
SfaNI GCATC 3 cut(s) 788, 922, 976
SfcI CTRYAG 1 cut(s) 885
SinI GGWCC 1 cut(s) 785
SmiMI CAYNNNNRTG 3 cut(s) 111, 398, 773
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 2 cut(s) 635, 978
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 2 cut(s) 172, 273
StyI CCWWGG 3 cut(s) 28, 453, 774
TaaI ACNGT 2 cut(s) 798, 1017
TaiI ACGT 2 cut(s) 101, 398
TaqI TCGA 4 cut(s) 19, 204, 231, 257
TasI AATT 2 cut(s) 635, 978
TauI GCSGC 5 cut(s) 180, 241, 248, 251, 254
TfiI GAWTC 5 cut(s) 21, 42, 129, 192, 553
TseI GCWGC 2 cut(s) 156, 884
TspDTI ATGAA 2 cut(s) 764, 831
VneI GTGCAC 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 785
XagI CCTNNNNNAGG 2 cut(s) 410, 579
XapI RAATTY 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 257
XmnI GAANNNNTTC 2 cut(s) 227, 635
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.