AT2G40815

Protein kinase C conserved region 2 (CalB)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014972
Physical Location & Seq
Reverse (-)
17034541 .. 17036281
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40815.2

Sequence Viewer

Length: 1104 bp
ATGGGGAAGATCCTTGTGGAAATCTGTATGATATCAGCTCGAGGGCTCCGTGTGGGAATTGGAATCGGATCCTCTCTACTGAAACACCAATGGTACGCCGTTGGTTGGCTTGATCCAGAAGACAAATACTGCACCACAATCGATGCTTCAAGAGCAGACAATCCTGTCTGGAGAACAAAGTTTGCTACTTTGCTCGATGATTCCACGATTCAGGATTCGAAGTTGGCTTTGCAAGTCGAGGTTTATAGCAGAGAACCCTTGTTCTTAAGGAAGAGGCTTCATGGCTCTGCTACTGTTTCTTTGAAGGAGTTTCTGACTAAGTATAAGCAACAACAGAGTTCTTCGAAAGCTGTAATTGAAGAAACTGGAAGCTATCAGCTTAGGAAGACGAACTCGAGCAAGCCTCAGGGTTTTGTCGATGTGTCGATACGTATATCTGCAGAGCGAGAGGATTTTGGGGGTTTTACTGGAGATTTTGGAGGAGTCATGCTCTCGAACAACTCAGATTACAACACTTCAGGACAGGATTACATGGCTGGTTCATCGCAGTATCCATTTGCTCCAATGGACCAGTCAAACCCATTCTCAGTTCCCCCATCATATAACCACCACTCATCAATGCCTAACCCTCCAATGACCAACACCAACCCACAAATGCAACAACCTTACTATCCTCCACCGATGCAGCCACCACCACCACCTATGAACTCAGGGTACATGCCTACATACATCCCCAAATCTGTGAATGACTCATCAATGCCTAACCCTCCAATGAACAACACCAACCCACAAATGCAACAACCTTACTATCCTCCACCAATGCAGCCAGCACCACCACCTATGAACTCAGGGTACATGCCTACATACATCCCTAATTCAGAGAATGTTACGAACATTCCATCGTCATCATCATCTGGAGGAGTACCAGGAGGGGCGGGAAGAGGATATGCTAGGACTGGCCCAGGGTTTGCTGTAGGAGTGGGAGCTGGTGCAGTAGTTGGAGCTGGTGCAGCTTTATATGGAAGCGAGTTTATGTCAGGAATCGACTTACCTTCAAGCTTACCTCACCCAAGTGTCCCCATTTCCATTGATCCTCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

367

Amino Acids

39.68

Weight (kDa)

6.21

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40815 AT2G40815
fragaria_vesca FvH4_7g26311
malus_domestica MD01G1172000.v1.1 MD07G1238500.v1.1
prunus_persica Prupe.2G267300_v2.0.a1
pyrus_communis pycom07g21450
rosa_chinensis RchiOBHm_Chr1g0372771
rosa_laevigata RLG00000026873
rosa_multiflora Rmu_sc0029212.1_g000001
rosa_rugosa Rorug01G0042900 Rorug01G0374300
rosa_samantha Rh1AG383000 Rh1CG359900 Rh1DG377600
rosa_wichuraiana Rw1G033710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AciI CCGC 1 cut(s) 935
AclWI GGATC 5 cut(s) 4, 63, 76, 107, 1085
AcuI CTGAAG 1 cut(s) 501
AfaI GTAC 4 cut(s) 95, 716, 854, 924
AfiI CCNNNNNNNGG 1 cut(s) 105
AflII CTTAAG 1 cut(s) 265
AgsI TTSAA 4 cut(s) 150, 304, 359, 1056
AjnI CCWGG 2 cut(s) 925, 961
AleI CACNNNNGTG 1 cut(s) 1071
AluBI AGCT 8 cut(s) 38, 350, 372, 379, 986, 1004, 1013, 1059
AluI AGCT 8 cut(s) 38, 350, 372, 379, 986, 1004, 1013, 1059
AlwI GGATC 5 cut(s) 4, 63, 76, 107, 1085
Ama87I CYCGRG 2 cut(s) 39, 394
AoxI GGCC 1 cut(s) 958
ApeKI GCWGC 3 cut(s) 685, 823, 1010
AspS9I GGNCC 2 cut(s) 568, 959
AsuHPI GGTGA 1 cut(s) 1058
AsuII TTCGAA 2 cut(s) 218, 344
AvaI CYCGRG 2 cut(s) 39, 394
AvaII GGWCC 1 cut(s) 568
AxyI CCTNAGG 1 cut(s) 405
BamHI GGATCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 2 cut(s) 126, 392
BbvI GCAGC 3 cut(s) 697, 835, 1022
BccI CCATC 2 cut(s) 604, 907
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 2 cut(s) 927, 963
BciVI GTATCC 1 cut(s) 561
BfaI CTAG 1 cut(s) 951
BfmI CTRYAG 2 cut(s) 438, 972
BfrI CTTAAG 1 cut(s) 265
BfuI GTATCC 1 cut(s) 561
BisI GCNGC 3 cut(s) 686, 824, 1011
BlsI GCNGC 3 cut(s) 687, 825, 1012
Bme1390I CCNGG 2 cut(s) 927, 963
Bme18I GGWCC 1 cut(s) 568
BmeT110I CYCGRG 2 cut(s) 39, 394
BmgT120I GGNCC 2 cut(s) 568, 959
BmiI GGNNCC 2 cut(s) 47, 70
BmrFI CCNGG 2 cut(s) 927, 963
BmsI GCATC 2 cut(s) 133, 672
BpiI GAAGAC 2 cut(s) 126, 392
BplI GAGNNNNNCTC 4 cut(s) 388, 420, 474, 506
BpmI CTGGAG 3 cut(s) 190, 489, 936
Bpu10I CCTNAGC 1 cut(s) 380
Bpu14I TTCGAA 2 cut(s) 218, 344
Bsa29I ATCGAT 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 961, 962
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 4 cut(s) 370, 472, 571, 961
Bse21I CCTNAGG 1 cut(s) 405
BseBI CCWGG 2 cut(s) 927, 963
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 961, 962
BseGI GGATG 2 cut(s) 729, 867
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 5 cut(s) 419, 516, 600, 723, 861
BseNI ACTGG 4 cut(s) 370, 472, 571, 961
BseRI GAGGAG 2 cut(s) 495, 933
BseXI GCAGC 3 cut(s) 697, 835, 1022
BsgI GTGCAG 3 cut(s) 115, 1011, 1029
BshFI GGCC 1 cut(s) 960
BshVI ATCGAT 1 cut(s) 141
BsiHKCI CYCGRG 2 cut(s) 39, 394
BslFI GGGAC 1 cut(s) 1061
BslI CCNNNNNNNGG 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 1061
BsnI GGCC 1 cut(s) 960
BsoBI CYCGRG 2 cut(s) 39, 394
Bsp119I TTCGAA 2 cut(s) 218, 344
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 4 cut(s) 9, 68, 112, 1090
BspACI CCGC 1 cut(s) 935
BspANI GGCC 1 cut(s) 960
BspCNI CTCAG 5 cut(s) 418, 515, 599, 722, 860
BspDI ATCGAT 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 47, 70
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 5 cut(s) 4, 63, 76, 107, 1085
BspT104I TTCGAA 2 cut(s) 218, 344
BspTI CTTAAG 1 cut(s) 265
BsrI ACTGG 4 cut(s) 370, 472, 571, 961
BssECI CCNNGG 2 cut(s) 961, 962
BssMI GATC 4 cut(s) 9, 68, 112, 1090
Bst2UI CCWGG 2 cut(s) 927, 963
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 2 cut(s) 266, 934
BstAFI CTTAAG 1 cut(s) 265
BstBAI YACGTR 1 cut(s) 431
BstBI TTCGAA 2 cut(s) 218, 344
BstC8I GCNNGC 2 cut(s) 401, 828
BstDEI CTNAG 7 cut(s) 318, 380, 405, 502, 586, 709, 847
BstF5I GGATG 2 cut(s) 729, 867
BstKTI GATC 4 cut(s) 12, 71, 115, 1093
BstMBI GATC 4 cut(s) 9, 68, 112, 1090
BstMWI GCNNNNNNNGC 2 cut(s) 152, 1010
BstNI CCWGG 2 cut(s) 927, 963
BstNSI RCATGY 2 cut(s) 721, 859
BstSCI CCNGG 2 cut(s) 925, 961
BstSFI CTRYAG 2 cut(s) 438, 972
BstSNI TACGTA 1 cut(s) 431
BstV1I GCAGC 3 cut(s) 697, 835, 1022
BstV2I GAAGAC 2 cut(s) 126, 392
BstX2I RGATCY 2 cut(s) 9, 68
BstYI RGATCY 2 cut(s) 9, 68
Bsu15I ATCGAT 1 cut(s) 141
Bsu36I CCTNAGG 1 cut(s) 405
BsuI GTATCC 1 cut(s) 561
BsuRI GGCC 1 cut(s) 960
BsuTUI ATCGAT 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 528
BtsCI GGATG 2 cut(s) 729, 867
Cac8I GCNNGC 2 cut(s) 401, 828
Cfr13I GGNCC 2 cut(s) 568, 959
ClaI ATCGAT 1 cut(s) 141
Csp6I GTAC 4 cut(s) 94, 715, 853, 923
CviAII CATG 5 cut(s) 281, 487, 532, 718, 856
CviQI GTAC 4 cut(s) 94, 715, 853, 923
DdeI CTNAG 7 cut(s) 318, 380, 405, 502, 586, 709, 847
DpnI GATC 4 cut(s) 11, 70, 114, 1092
DpnII GATC 4 cut(s) 9, 68, 112, 1090
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
Eam1104I CTCTTC 2 cut(s) 266, 934
EarI CTCTTC 2 cut(s) 266, 934
Eco105I TACGTA 1 cut(s) 431
Eco24I GRGCYC 1 cut(s) 48
Eco32I GATATC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 501
Eco81I CCTNAGG 1 cut(s) 405
Eco88I CYCGRG 2 cut(s) 39, 394
EcoRII CCWGG 2 cut(s) 925, 961
EcoRV GATATC 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 5 cut(s) 284, 490, 535, 721, 859
FaqI GGGAC 1 cut(s) 1061
FatI CATG 5 cut(s) 280, 486, 531, 717, 855
FauI CCCGC 1 cut(s) 928
Fnu4HI GCNGC 3 cut(s) 686, 824, 1011
FokI GGATG 2 cut(s) 716, 854
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 3 cut(s) 686, 824, 1011
FspBI CTAG 1 cut(s) 951
GluI GCNGC 3 cut(s) 686, 824, 1011
GsuI CTGGAG 3 cut(s) 190, 489, 936
HaeIII GGCC 1 cut(s) 960
Hin1II CATG 5 cut(s) 284, 490, 535, 721, 859
HindIII AAGCTT 1 cut(s) 1057
HinfI GANTC 7 cut(s) 63, 200, 208, 215, 483, 749, 1041
HphI GGTGA 1 cut(s) 1058
Hpy188I TCNGA 4 cut(s) 68, 315, 505, 880
Hpy188III TCNNGA 8 cut(s) 116, 150, 169, 212, 493, 519, 915, 1038
HpyAV CCTTC 2 cut(s) 298, 1062
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 9 cut(s) 132, 232, 440, 658, 685, 796, 823, 992, 1010
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 1010
HpyF3I CTNAG 7 cut(s) 318, 380, 405, 502, 586, 709, 847
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 5 cut(s) 284, 490, 535, 721, 859
Kzo9I GATC 4 cut(s) 9, 68, 112, 1090
LmnI GCTCC 4 cut(s) 51, 565, 983, 1001
Lsp1109I GCAGC 3 cut(s) 697, 835, 1022
LweI GCATC 2 cut(s) 133, 672
MaeI CTAG 1 cut(s) 951
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 1 cut(s) 886
MalI GATC 4 cut(s) 11, 70, 114, 1092
MboI GATC 4 cut(s) 9, 68, 112, 1090
MboII GAAGA 7 cut(s) 19, 131, 283, 333, 371, 397, 951
MflI RGATCY 2 cut(s) 9, 68
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 3 cut(s) 57, 354, 874
MlyI GAGTC 2 cut(s) 492, 743
MmeI TCCRAC 1 cut(s) 979
MseI TTAA 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 1071
MspCI CTTAAG 1 cut(s) 265
MspR9I CCNGG 2 cut(s) 927, 963
MvaI CCWGG 2 cut(s) 927, 963
MwoI GCNNNNNNNGC 2 cut(s) 152, 1010
NdeII GATC 4 cut(s) 9, 68, 112, 1090
NlaIII CATG 5 cut(s) 284, 490, 535, 721, 859
NlaIV GGNNCC 2 cut(s) 47, 70
NspI RCATGY 2 cut(s) 721, 859
NspV TTCGAA 2 cut(s) 218, 344
OliI CACNNNNGTG 1 cut(s) 1071
PaeR7I CTCGAG 2 cut(s) 39, 394
PasI CCCWGGG 1 cut(s) 962
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PfeI GAWTC 5 cut(s) 63, 200, 208, 215, 1041
PkrI GCNGC 3 cut(s) 687, 825, 1012
PleI GAGTC 2 cut(s) 491, 743
PpsI GAGTC 2 cut(s) 491, 743
Ppu21I YACGTR 1 cut(s) 431
Psp6I CCWGG 2 cut(s) 925, 961
PspGI CCWGG 2 cut(s) 925, 961
PspN4I GGNNCC 2 cut(s) 47, 70
PspPI GGNCC 2 cut(s) 568, 959
PspXI VCTCGAGB 2 cut(s) 39, 394
PsrI GAACNNNNNNTAC 4 cut(s) 698, 730, 836, 868
PstI CTGCAG 1 cut(s) 442
PsuI RGATCY 2 cut(s) 9, 68
RsaI GTAC 4 cut(s) 95, 716, 854, 924
RsaNI GTAC 4 cut(s) 94, 715, 853, 923
RseI CAYNNNNRTG 1 cut(s) 1071
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 3 cut(s) 686, 824, 1011
Sau3AI GATC 4 cut(s) 9, 68, 112, 1090
Sau96I GGNCC 2 cut(s) 568, 959
SchI GAGTC 2 cut(s) 492, 743
ScrFI CCNGG 2 cut(s) 927, 963
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 2 cut(s) 133, 672
SfcI CTRYAG 2 cut(s) 438, 972
Sfr274I CTCGAG 2 cut(s) 39, 394
SfuI TTCGAA 2 cut(s) 218, 344
SinI GGWCC 1 cut(s) 568
SlaI CTCGAG 2 cut(s) 39, 394
SmiMI CAYNNNNRTG 1 cut(s) 1071
SmlI CTYRAG 3 cut(s) 39, 265, 394
SmoI CTYRAG 3 cut(s) 39, 265, 394
SnaBI TACGTA 1 cut(s) 431
Sse9I AATT 3 cut(s) 57, 354, 874
SsiI CCGC 1 cut(s) 935
SspMI CTAG 1 cut(s) 951
StyD4I CCNGG 2 cut(s) 925, 961
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 1 cut(s) 433
TasI AATT 3 cut(s) 57, 354, 874
TfiI GAWTC 5 cut(s) 63, 200, 208, 215, 1041
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TseI GCWGC 3 cut(s) 685, 823, 1010
TspDTI ATGAA 5 cut(s) 269, 531, 719, 788, 857
TspGWI ACGGA 1 cut(s) 38
Vha464I CTTAAG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 568
XceI RCATGY 2 cut(s) 721, 859
XhoI CTCGAG 2 cut(s) 39, 394
XspI CTAG 1 cut(s) 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.