Rh1CG359900

Protein kinase C conserved region 2 (CalB)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014972
Physical Location & Seq
Reverse (-)
63307041 .. 63307556
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG359900.1

Sequence Viewer

Length: 516 bp
ATGGGGAAACTCTGGGTTGAAGTTTGCTTGATATCTGCTCGAGGGCTTCGGCGTTCATCGTCCCTATGGAAGCTTCAATGGTATGCTGTTGGGTGGACCAATCCCAATAACAAGTACTGCACCAAGATTGATGCATCTGGAAATGCAAATCCAGTATGGAAAACCAAGTTTGCTACCTTGGTTGAGGACGCGGAGTCTAAACTGAATGATTTGGCTCTGCACATTGAAGTCTATAGTAGAGAGCCTATATTCCTAAGAGAAAGGCTACAGGGGACAGCTACTATTCTCTTGAAAGAGTTTCTGGCTAAGCATAACAAGAATTCTGAGAATTCAAGGCATGGAGTTGAAGAAGTTGGGAGCTACCAATTGCGAAAAAAGAATTCCAACAAACCTCAAGGTTTTGTTGATGTTTCAATCCACATTTCTGAGGATATGGAAGGGAGAAGCTCATACACAGGTATTCCTAGAACCCTTTGGAGAGTTGTTCCTATTCAGTTTGTTTCGTATGTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

171

Amino Acids

19.6

Weight (kDa)

9.49

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 6 - 106 3.9e-09 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40815 AT2G40815
fragaria_vesca FvH4_7g26311
malus_domestica MD01G1172000.v1.1 MD07G1238500.v1.1
prunus_persica Prupe.2G267300_v2.0.a1
pyrus_communis pycom07g21450
rosa_chinensis RchiOBHm_Chr1g0372771
rosa_laevigata RLG00000026873
rosa_multiflora Rmu_sc0029212.1_g000001
rosa_rugosa Rorug01G0042900 Rorug01G0374300
rosa_samantha Rh1AG383000 Rh1CG359900 Rh1DG377600
rosa_wichuraiana Rw1G033710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 1 cut(s) 191
AcsI RAATTY 3 cut(s) 319, 328, 379
AfaI GTAC 1 cut(s) 116
AgsI TTSAA 7 cut(s) 20, 77, 227, 292, 333, 347, 414
AhdI GACNNNNNGTC 1 cut(s) 193
AluBI AGCT 4 cut(s) 73, 278, 360, 447
AluI AGCT 4 cut(s) 73, 278, 360, 447
Ama87I CYCGRG 1 cut(s) 39
ApoI RAATTY 3 cut(s) 319, 328, 379
AspS9I GGNCC 1 cut(s) 96
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 1 cut(s) 96
BfaI CTAG 1 cut(s) 465
BfmI CTRYAG 2 cut(s) 232, 266
BlpI GCTNAGC 1 cut(s) 306
BmcAI AGTACT 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 96
BmeRI GACNNNNNGTC 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 96
BmsI GCATC 2 cut(s) 121, 143
Bpu1102I GCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 315, 417
BseNI ACTGG 1 cut(s) 152
BsgI GTGCAG 2 cut(s) 103, 203
Bsh1236I CGCG 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 39
BslFI GGGAC 2 cut(s) 46, 286
BsmFI GGGAC 2 cut(s) 46, 286
BsoBI CYCGRG 1 cut(s) 39
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 1 cut(s) 191
BspCNI CTCAG 2 cut(s) 316, 418
BspFNI CGCG 1 cut(s) 191
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 177
BstDEI CTNAG 4 cut(s) 254, 306, 324, 426
BstFNI CGCG 1 cut(s) 191
BstSFI CTRYAG 2 cut(s) 232, 266
BstUI CGCG 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 96
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 115
CviAII CATG 1 cut(s) 338
CviJI RGCY 9 cut(s) 46, 73, 215, 244, 265, 278, 305, 360, 447
CviKI_1 RGCY 9 cut(s) 46, 73, 215, 244, 265, 278, 305, 360, 447
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 4 cut(s) 254, 306, 324, 426
DriI GACNNNNNGTC 1 cut(s) 193
Eam1105I GACNNNNNGTC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 177
Eco32I GATATC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 39
EcoRI GAATTC 3 cut(s) 319, 328, 379
EcoRV GATATC 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 1 cut(s) 341
FaqI GGGAC 2 cut(s) 46, 286
FatI CATG 1 cut(s) 337
FspBI CTAG 1 cut(s) 465
HgaI GACGC 1 cut(s) 197
Hin1II CATG 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 2 cut(s) 325, 427
Hpy188III TCNNGA 2 cut(s) 138, 289
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 1 cut(s) 431
HpyCH4V TGCA 4 cut(s) 120, 134, 146, 220
HpyF3I CTNAG 4 cut(s) 254, 306, 324, 426
Hsp92II CATG 1 cut(s) 341
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 5 cut(s) 123, 165, 254, 287, 441
LweI GCATC 2 cut(s) 121, 143
MaeI CTAG 1 cut(s) 465
MboII GAAGA 1 cut(s) 359
MfeI CAATTG 1 cut(s) 365
MluCI AATT 5 cut(s) 319, 328, 365, 379, 510
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 4 cut(s) 35, 178, 402, 421
Mph1103I ATGCAT 1 cut(s) 136
MunI CAATTG 1 cut(s) 365
MvnI CGCG 1 cut(s) 191
NlaIII CATG 1 cut(s) 341
NsiI ATGCAT 1 cut(s) 136
PaeR7I CTCGAG 1 cut(s) 39
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 96
PspXI VCTCGAGB 1 cut(s) 39
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 96
ScaI AGTACT 1 cut(s) 116
SchI GAGTC 1 cut(s) 203
SetI ASST 8 cut(s) 75, 179, 280, 362, 394, 400, 449, 460
SfaNI GCATC 2 cut(s) 121, 143
SfcI CTRYAG 2 cut(s) 232, 266
Sfr274I CTCGAG 1 cut(s) 39
SinI GGWCC 1 cut(s) 96
SlaI CTCGAG 1 cut(s) 39
SmlI CTYRAG 2 cut(s) 39, 393
SmoI CTYRAG 2 cut(s) 39, 393
Sse9I AATT 5 cut(s) 319, 328, 365, 379, 510
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 465
StyI CCWWGG 1 cut(s) 177
TaqI TCGA 1 cut(s) 40
TasI AATT 5 cut(s) 319, 328, 365, 379, 510
TatI WGTACW 1 cut(s) 114
TspDTI ATGAA 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 3 cut(s) 319, 328, 379
XhoI CTCGAG 1 cut(s) 39
XspI CTAG 1 cut(s) 465
ZrmI AGTACT 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.