Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007150

Physical Location & Seq

Genomic Coordinates Forward (+)

17042623 .. 17044915

Gene Structure 2293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTCAAGCAGTCGAAATACCCACTGGTGTCACAGATGTCAGCGTGCTGTCCGCCTTCACGGCCAAGAGCCTGTATGCTTTTATTGCGGAGGTGGATTTGTTGAAGAACTTGATATGGCTCAAGCCAGCCCCTTTGATATGTTTAGATCCCACAGGGGTGTTGTAGAACGTGATCAGACTTTTGATCTCATGGATGCTTTCTCTGTGTTTATGAGGAACCGCTTAGCTGAAAGGAGCCACGACAGAGAAATCAGAGGAAGAACCATCAGTTCAGGTCCTGAAAACTTTCCTGGTCTGGCCCCTTTGTTGATCTTTGGTGGTCAAGTCCCTTATAGACTAACTGGCGACAATGCAGTCGAAGCCCTCTTCAATGGCGGCTCCCCTGGCATTGGCATCACACGTGGTAACACCGGCGACTACTTCTTCGGTCCCGGCCTTGAAGAATTGTTCGAGCAGCTTTCAGCTGGCACTACTCGCCGAGGCCCACCACCCGCACCGAGATCAGCAATAGACGCATTGCCAACTATCAAGATCGCGCAGAGGCATCTTAGGTCATCGGACTCGAATTGTCCCGTGTGCAAAGACGAATTCGAACTGGGATCAGAAGCGAAACAGATGCCGTGTAACCACATCTATCATTCTGACTGCATTGTCCCGTGGCTGGTTCAGCACAACTCTTGCCCGGTCTGTCGCCAAGAGCTACCATCAGCTAGCGGACCTTCAAGCAGTCAAAACAGAACCACCCCTACCAGAAACTACAGAAGCAGTAGTAGTAGTAGTAGTAGTAACAGTCGTGAGAACGGGAATGAAAGAAGGAATCCTTTCTCTTCCTTCTGGCCATTCCGTTCGTCAGGTTCAAGCTCAAGCTCCACTCAAAACCGTGGAGGCACAAGAAACTCGGATACAAGCGATGAGAACCATAACTACCATCAACAGCAACATCAACAATCATATATGGGTTACAGTGGCTGGCCTTTTGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000820 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010498 GO:0010565 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030104 GO:0030163 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042592 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0047484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051603 GO:0061630 GO:0061659 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902005 GO:1902006 GO:2000070 GO:2000214 GO:2000215 GO:2000282 GO:2000283

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

328

Amino Acids

36.58

Weight (kDa)

7.18

Isoelectric Point (pI)

68.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	6 - 37	3e-12	zinc-ribbon
zf-rbx1	PF12678	187 - 231	2.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	189 - 231	1.3e-13	Ring finger domain
zf-C3HC4_2	PF13923	189 - 230	8.7e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	189 - 217	1.7e-07	RING-like zinc finger
zf-RING_UBOX	PF13445	190 - 228	4.6e-07	RING-type zinc-finger
zf-C3HC4	PF00097	190 - 230	1.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40830 AT2G40830 AT2G40830 AT2G40830
fragaria_vesca	FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690
malus_domestica	MD09G1209600.v1.1 MD17G1191600.v1.1
prunus_persica	Prupe.3G067600_v2.0.a1 Prupe.3G067600_v2.0.a1
pyrus_communis	pycom09g12590 pycom17g19850
rosa_chinensis	RchiOBHm_Chr6g0302621
rosa_laevigata	RLG00000011156
rosa_multiflora	Rmu_co8203528.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165510
rosa_rugosa	Rorug06G0315500
rosa_samantha	Rh6AG428800 Rh6BG473700 Rh6CG441100 Rh6DG427800
rosa_wichuraiana	Rw6G037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	353, 650
AccII	CGCG	1 cut(s)	536
AciI	CCGC	6 cut(s)	52, 87, 220, 375, 492, 714
AclWI	GGATC	2 cut(s)	141, 607
AcoI	YGGCCR	2 cut(s)	61, 836
AcsI	RAATTY	1 cut(s)	587
AcvI	CACGTG	1 cut(s)	401
AfiI	CCNNNNNNNGG	2 cut(s)	389, 661
AflIII	ACRYGT	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	104, 370, 440, 723, 858
AjnI	CCWGG	2 cut(s)	289, 382
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	7 cut(s)	227, 457, 464, 700, 710, 861, 867
AluI	AGCT	7 cut(s)	227, 457, 464, 700, 710, 861, 867
AlwI	GGATC	2 cut(s)	141, 607
AlwNI	CAGNNNCTG	2 cut(s)	278, 969
AoxI	GGCC	6 cut(s)	61, 297, 433, 481, 836, 971
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	1 cut(s)	587
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
Asp700I	GAANNNNTTC	2 cut(s)	285, 821
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	5 cut(s)	275, 298, 428, 482, 716
AsuC2I	CCSGG	2 cut(s)	432, 683
AsuII	TTCGAA	1 cut(s)	591
AsuNHI	GCTAGC	1 cut(s)	710
AvaII	GGWCC	3 cut(s)	275, 428, 716
BalI	TGGCCA	1 cut(s)	838
BbrPI	CACGTG	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	3 cut(s)	272, 712, 936
BceAI	ACGGC	2 cut(s)	76, 604
BcgI	CGANNNNNNTGC	2 cut(s)	598, 632
BciT130I	CCWGG	2 cut(s)	291, 384
BciVI	GTATCC	1 cut(s)	895
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	2 cut(s)	432, 683
BfaI	CTAG	1 cut(s)	711
BfmI	CTRYAG	1 cut(s)	757
BfuI	GTATCC	1 cut(s)	895
BglI	GCCNNNNNGGC	1 cut(s)	60
BisI	GCNGC	2 cut(s)	376, 455
BlpI	GCTNAGC	1 cut(s)	223
BlsI	GCNGC	2 cut(s)	377, 456
Bme1390I	CCNGG	4 cut(s)	291, 384, 432, 683
Bme18I	GGWCC	3 cut(s)	275, 428, 716
BmgT120I	GGNCC	5 cut(s)	275, 298, 428, 482, 716
BmiI	GGNNCC	5 cut(s)	218, 236, 300, 379, 430
BmrFI	CCNGG	4 cut(s)	291, 384, 432, 683
BmrI	ACTGGG	1 cut(s)	605
BmsI	GCATC	4 cut(s)	184, 402, 553, 606
BmtI	GCTAGC	1 cut(s)	714
BmuI	ACTGGG	1 cut(s)	605
Bpu1102I	GCTNAGC	1 cut(s)	223
Bpu14I	TTCGAA	1 cut(s)	591
BpuEI	CTTGAG	2 cut(s)	105, 847
BpuMI	CCSGG	2 cut(s)	432, 683
BsaAI	YACGTR	1 cut(s)	401
BsaJI	CCNNGG	4 cut(s)	382, 478, 656, 880
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 661
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	3 cut(s)	29, 346, 600
Bse3DI	GCAATG	1 cut(s)	515
BseBI	CCWGG	2 cut(s)	291, 384
BseDI	CCNNGG	4 cut(s)	382, 478, 656, 880
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	389, 661
BseMI	GCAATG	1 cut(s)	515
BseNI	ACTGG	3 cut(s)	29, 346, 600
BseXI	GCAGC	1 cut(s)	466
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	6 cut(s)	63, 299, 435, 483, 838, 973
BsiSI	CCGG	3 cut(s)	411, 432, 683
BslFI	GGGAC	4 cut(s)	311, 414, 555, 638
BslI	CCNNNNNNNGG	2 cut(s)	389, 661
BsmFI	GGGAC	4 cut(s)	311, 414, 555, 638
BsnI	GGCC	6 cut(s)	63, 299, 435, 483, 838, 973
Bsp119I	TTCGAA	1 cut(s)	591
Bsp143I	GATC	7 cut(s)	146, 172, 184, 309, 500, 531, 599
Bsp1720I	GCTNAGC	1 cut(s)	223
BspACI	CCGC	6 cut(s)	52, 87, 220, 375, 492, 714
BspANI	GGCC	6 cut(s)	63, 299, 435, 483, 838, 973
BspFNI	CGCG	1 cut(s)	536
BspLI	GGNNCC	5 cut(s)	218, 236, 300, 379, 430
BspOI	GCTAGC	1 cut(s)	714
BspPI	GGATC	2 cut(s)	141, 607
BspT104I	TTCGAA	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	515
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	3 cut(s)	29, 346, 600
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	4 cut(s)	382, 478, 656, 880
BssMI	GATC	7 cut(s)	146, 172, 184, 309, 500, 531, 599
Bst2UI	CCWGG	2 cut(s)	291, 384
Bst4CI	ACNGT	3 cut(s)	791, 881, 965
Bst6I	CTCTTC	2 cut(s)	371, 832
BstBAI	YACGTR	1 cut(s)	401
BstBI	TTCGAA	1 cut(s)	591
BstC8I	GCNNGC	5 cut(s)	45, 127, 466, 712, 971
BstDEI	CTNAG	2 cut(s)	223, 548
BstDSI	CCRYGG	2 cut(s)	656, 880
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	7 cut(s)	149, 175, 187, 312, 503, 534, 602
BstMBI	GATC	7 cut(s)	146, 172, 184, 309, 500, 531, 599
BstMWI	GCNNNNNNNGC	7 cut(s)	60, 84, 359, 384, 474, 512, 667
BstNI	CCWGG	2 cut(s)	291, 384
BstSCI	CCNGG	4 cut(s)	289, 382, 430, 681
BstSFI	CTRYAG	1 cut(s)	757
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	1 cut(s)	466
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BsuI	GTATCC	1 cut(s)	895
BsuRI	GGCC	6 cut(s)	63, 299, 435, 483, 838, 973
BtgI	CCRYGG	2 cut(s)	656, 880
BtgZI	GCGATG	1 cut(s)	924
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	2 cut(s)	22, 970
Cac8I	GCNNGC	5 cut(s)	45, 127, 466, 712, 971
CaiI	CAGNNNCTG	2 cut(s)	278, 969
CfoI	GCGC	1 cut(s)	538
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	5 cut(s)	275, 298, 428, 482, 716
CseI	GACGC	1 cut(s)	521
CviAII	CATG	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	223, 548
DpnI	GATC	7 cut(s)	148, 174, 186, 311, 502, 533, 601
DpnII	GATC	7 cut(s)	146, 172, 184, 309, 500, 531, 599
DrdI	GACNNNNNNGTC	2 cut(s)	353, 650
DseDI	GACNNNNNNGTC	2 cut(s)	353, 650
EaeI	YGGCCR	2 cut(s)	61, 836
Eam1104I	CTCTTC	2 cut(s)	371, 832
EarI	CTCTTC	2 cut(s)	371, 832
EciI	GGCGGA	1 cut(s)	41
Eco47I	GGWCC	3 cut(s)	275, 428, 716
Eco72I	CACGTG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	289, 382
FaeI	CATG	1 cut(s)	193
FalI	AAGNNNNNCTT	2 cut(s)	805, 837
FaqI	GGGAC	4 cut(s)	311, 414, 555, 638
FatI	CATG	1 cut(s)	189
FauI	CCCGC	1 cut(s)	499
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	376, 455
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	376, 455
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	2 cut(s)	376, 455
HaeIII	GGCC	6 cut(s)	63, 299, 435, 483, 838, 973
HapII	CCGG	3 cut(s)	411, 432, 683
HgaI	GACGC	1 cut(s)	521
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HinfI	GANTC	2 cut(s)	560, 817
HpaII	CCGG	3 cut(s)	411, 432, 683
Hpy188I	TCNGA	6 cut(s)	177, 254, 559, 604, 643, 901
Hpy188III	TCNNGA	3 cut(s)	278, 529, 794
HpyAV	CCTTC	4 cut(s)	65, 729, 807, 841
HpyCH4III	ACNGT	3 cut(s)	791, 881, 965
HpyCH4IV	ACGT	2 cut(s)	169, 400
HpyCH4V	TGCA	3 cut(s)	353, 579, 648
HpyF10VI	GCNNNNNNNGC	7 cut(s)	60, 84, 359, 384, 474, 512, 667
HpyF3I	CTNAG	2 cut(s)	223, 548
HpySE526I	ACGT	2 cut(s)	169, 400
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	536
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	7 cut(s)	146, 172, 184, 309, 500, 531, 599
LmnI	GCTCC	3 cut(s)	234, 383, 872
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	4 cut(s)	184, 402, 553, 606
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	2 cut(s)	169, 400
MaeIII	GTNAC	5 cut(s)	29, 404, 623, 785, 959
MalI	GATC	7 cut(s)	148, 174, 186, 311, 502, 533, 601
MboI	GATC	7 cut(s)	146, 172, 184, 309, 500, 531, 599
MboII	GAAGA	6 cut(s)	116, 270, 358, 415, 452, 819
MflI	RGATCY	1 cut(s)	146
MlsI	TGGCCA	1 cut(s)	838
MluCI	AATT	3 cut(s)	443, 565, 587
MluNI	TGGCCA	1 cut(s)	838
MlyI	GAGTC	1 cut(s)	554
MnlI	CCTC	7 cut(s)	83, 207, 248, 374, 473, 534, 878
Mox20I	TGGCCA	1 cut(s)	838
MroXI	GAANNNNTTC	2 cut(s)	285, 821
MscI	TGGCCA	1 cut(s)	838
MslI	CAYNNNNRTG	1 cut(s)	156
Msp20I	TGGCCA	1 cut(s)	838
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	3 cut(s)	411, 432, 683
MspR9I	CCNGG	4 cut(s)	291, 384, 432, 683
MvaI	CCWGG	2 cut(s)	291, 384
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	7 cut(s)	60, 84, 359, 384, 474, 512, 667
NciI	CCSGG	2 cut(s)	432, 683
NdeII	GATC	7 cut(s)	146, 172, 184, 309, 500, 531, 599
NheI	GCTAGC	1 cut(s)	710
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	5 cut(s)	218, 236, 300, 379, 430
NmeAIII	GCCGAG	1 cut(s)	503
NmuCI	GTSAC	1 cut(s)	29
NspV	TTCGAA	1 cut(s)	591
OliI	CACNNNNGTG	1 cut(s)	156
PdmI	GAANNNNTTC	2 cut(s)	285, 821
PfeI	GAWTC	1 cut(s)	817
PkrI	GCNGC	2 cut(s)	377, 456
PleI	GAGTC	1 cut(s)	554
PmaCI	CACGTG	1 cut(s)	401
PmlI	CACGTG	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	554
Ppu21I	YACGTR	1 cut(s)	401
PpuMI	RGGWCCY	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	289, 382
PspCI	CACGTG	1 cut(s)	401
PspGI	CCWGG	2 cut(s)	289, 382
PspN4I	GGNNCC	5 cut(s)	218, 236, 300, 379, 430
PspPI	GGNCC	5 cut(s)	275, 298, 428, 482, 716
PspPPI	RGGWCCY	1 cut(s)	275
PsrI	GAACNNNNNNTAC	4 cut(s)	730, 762, 908, 940
PstNI	CAGNNNCTG	2 cut(s)	278, 969
PsuI	RGATCY	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	464
RseI	CAYNNNNRTG	1 cut(s)	156
SatI	GCNGC	2 cut(s)	376, 455
Sau3AI	GATC	7 cut(s)	146, 172, 184, 309, 500, 531, 599
Sau96I	GGNCC	5 cut(s)	275, 298, 428, 482, 716
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	4 cut(s)	291, 384, 432, 683
SfaNI	GCATC	4 cut(s)	184, 402, 553, 606
SfcI	CTRYAG	1 cut(s)	757
SfuI	TTCGAA	1 cut(s)	591
SgrAI	CRCCGGYG	1 cut(s)	410
SinI	GGWCC	3 cut(s)	275, 428, 716
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	120, 862
SmoI	CTYRAG	2 cut(s)	120, 862
Sse9I	AATT	3 cut(s)	443, 565, 587
SsiI	CCGC	6 cut(s)	52, 87, 220, 375, 492, 714
SspMI	CTAG	1 cut(s)	711
StyD4I	CCNGG	4 cut(s)	289, 382, 430, 681
TaaI	ACNGT	3 cut(s)	791, 881, 965
TaiI	ACGT	2 cut(s)	172, 403
TaqI	TCGA	5 cut(s)	13, 357, 450, 563, 591
TaqII	GACCGA	1 cut(s)	416
TasI	AATT	3 cut(s)	443, 565, 587
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	1 cut(s)	817
TscAI	CASTG	2 cut(s)	29, 970
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	822
TspGWI	ACGGA	1 cut(s)	833
TspRI	CASTG	2 cut(s)	29, 970
VpaK11BI	GGWCC	3 cut(s)	275, 428, 716
XapI	RAATTY	1 cut(s)	587
XmnI	GAANNNNTTC	2 cut(s)	285, 821
XspI	CTAG	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.