Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8203528.1

Orthogroup ID

OG0007150

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 615

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8203528.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 583 bp

atgtcaagcggtcgaaacacccattggtgttacgaatgcaggcggccaactcagctgcaagggcgagatgcagtttgccgaaactgcagtggaggatttgttcaagaacttgatgacatggttcatatcagcccactggctgatgaggatcgtgacagtaggtttggattcatggatgctttctcagcttggcagcagttaacagacagaagaggtagcgataatataaggggtagatcagatttagttcctgaacattccccggcgttttctcctttgttgatttttggtggccaaattcctgttcgatttgggaatggtgcatttgaagctctgttcaatgggtctcctggaataggtgtaacgcggggtaatgtgggtgattattttgttggtcctggcttggaagaattgtttgagcagctttcagcaaatgataggaggggccctccccctgcatcgaggctttcaatcgatgcaatgccaactattaagatcacgaataagcatcttcgttctgattcgcattgccccgtttgccaagacaaatttgagctgggatctgaagcaaggcaaatgccat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000820 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010498 GO:0010565 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030104 GO:0030163 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042592 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0047484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051603 GO:0061630 GO:0061659 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902005 GO:1902006 GO:2000070 GO:2000214 GO:2000215 GO:2000282 GO:2000283

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

194

Amino Acids

21.47

Weight (kDa)

5.72

Isoelectric Point (pI)

63.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40830 AT2G40830 AT2G40830 AT2G40830
fragaria_vesca	FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690
malus_domestica	MD09G1209600.v1.1 MD17G1191600.v1.1
prunus_persica	Prupe.3G067600_v2.0.a1 Prupe.3G067600_v2.0.a1
pyrus_communis	pycom09g12590 pycom17g19850
rosa_chinensis	RchiOBHm_Chr6g0302621
rosa_laevigata	RLG00000011156
rosa_multiflora	Rmu_co8203528.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165510
rosa_rugosa	Rorug06G0315500
rosa_samantha	Rh6AG428800 Rh6BG473700 Rh6CG441100 Rh6DG427800
rosa_wichuraiana	Rw6G037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	367
AciI	CCGC	3 cut(s)	9, 43, 367
AclWI	GGATC	2 cut(s)	156, 568
AcoI	YGGCCR	2 cut(s)	44, 292
AcsI	RAATTY	2 cut(s)	297, 548
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	4 cut(s)	104, 329, 340, 471
AjnI	CCWGG	2 cut(s)	349, 397
AjuI	GAANNNNNNNTTGG	4 cut(s)	7, 39, 288, 320
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	5 cut(s)	55, 188, 332, 424, 556
AluI	AGCT	5 cut(s)	55, 188, 332, 424, 556
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	2 cut(s)	156, 568
AoxI	GGCC	3 cut(s)	44, 292, 445
ApaI	GGGCCC	1 cut(s)	449
ApeKI	GCWGC	3 cut(s)	55, 193, 421
ApoI	RAATTY	2 cut(s)	297, 548
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspS9I	GGNCC	3 cut(s)	395, 445, 446
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	449
BalI	TGGCCA	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	449
BbvI	GCAGC	3 cut(s)	42, 205, 433
BciT130I	CCWGG	2 cut(s)	351, 399
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	85
BisI	GCNGC	4 cut(s)	44, 56, 194, 422
BlsI	GCNGC	4 cut(s)	45, 57, 195, 423
Bme1390I	CCNGG	3 cut(s)	263, 351, 399
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	3 cut(s)	395, 445, 446
BmiI	GGNNCC	2 cut(s)	446, 447
BmrFI	CCNGG	3 cut(s)	263, 351, 399
BmsI	GCATC	5 cut(s)	58, 166, 466, 467, 517
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
BpuMI	CCSGG	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	141
Bse3DI	GCAATG	2 cut(s)	486, 526
Bse8I	GATNNNNATC	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	351, 399
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	2 cut(s)	486, 526
BseMII	CTCAG	2 cut(s)	65, 198
BseNI	ACTGG	1 cut(s)	141
BseSI	GKGCMC	1 cut(s)	449
BseXI	GCAGC	3 cut(s)	42, 205, 433
BseYI	CCCAGC	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	367
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	3 cut(s)	46, 294, 447
BshVI	ATCGAT	1 cut(s)	474
BsiEI	CGRYCG	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	3 cut(s)	46, 294, 447
Bso31I	GGTCTC	1 cut(s)	351
Bsp120I	GGGCCC	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp143I	GATC	4 cut(s)	148, 236, 495, 560
BspACI	CCGC	3 cut(s)	9, 43, 367
BspANI	GGCC	3 cut(s)	46, 294, 447
BspCNI	CTCAG	2 cut(s)	64, 197
BspDI	ATCGAT	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	446, 447
BspMAI	CTGCAG	1 cut(s)	89
BspPI	GGATC	2 cut(s)	156, 568
BspTNI	GGTCTC	1 cut(s)	351
BsrDI	GCAATG	2 cut(s)	486, 526
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	4 cut(s)	148, 236, 495, 560
Bst2UI	CCWGG	2 cut(s)	351, 399
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	2 cut(s)	51, 184
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	367
BstKTI	GATC	4 cut(s)	151, 239, 498, 563
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	4 cut(s)	148, 236, 495, 560
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 61, 84, 185, 329, 537
BstNI	CCWGG	2 cut(s)	351, 399
BstSCI	CCNGG	3 cut(s)	261, 349, 397
BstSFI	CTRYAG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	449
BstUI	CGCG	1 cut(s)	367
BstV1I	GCAGC	3 cut(s)	42, 205, 433
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
Bsu15I	ATCGAT	1 cut(s)	474
BsuRI	GGCC	3 cut(s)	46, 294, 447
BsuTUI	ATCGAT	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	94, 134
Cac8I	GCNNGC	1 cut(s)	41
Cfr13I	GGNCC	3 cut(s)	395, 445, 446
ClaI	ATCGAT	1 cut(s)	474
CviAII	CATG	2 cut(s)	118, 172
DdeI	CTNAG	2 cut(s)	51, 184
DpnI	GATC	4 cut(s)	150, 238, 497, 562
DpnII	GATC	4 cut(s)	148, 236, 495, 560
EaeI	YGGCCR	2 cut(s)	44, 292
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	449
Eco31I	GGTCTC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	395
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoO109I	RGGNCCY	2 cut(s)	445, 446
EcoRII	CCWGG	2 cut(s)	349, 397
EcoT38I	GRGCYC	1 cut(s)	449
FaeI	CATG	2 cut(s)	121, 175
FaiI	YATR	4 cut(s)	119, 126, 173, 227
FatI	CATG	2 cut(s)	117, 171
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	4 cut(s)	44, 56, 194, 422
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	4 cut(s)	44, 56, 194, 422
GluI	GCNGC	4 cut(s)	44, 56, 194, 422
GsaI	CCCAGC	1 cut(s)	560
HaeIII	GGCC	3 cut(s)	46, 294, 447
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	2 cut(s)	121, 175
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	2 cut(s)	168, 521
HpaI	GTTAAC	1 cut(s)	201
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	3 cut(s)	241, 520, 565
Hpy188III	TCNNGA	4 cut(s)	104, 152, 251, 499
Hpy8I	GTNNAC	1 cut(s)	201
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	7 cut(s)	39, 58, 71, 87, 323, 458, 479
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 61, 84, 185, 329, 537
HpyF3I	CTNAG	2 cut(s)	51, 184
Hsp92II	CATG	2 cut(s)	121, 175
KspAI	GTTAAC	1 cut(s)	201
Kzo9I	GATC	4 cut(s)	148, 236, 495, 560
Lsp1109I	GCAGC	3 cut(s)	42, 205, 433
LweI	GCATC	5 cut(s)	58, 166, 466, 467, 517
MaeIII	GTNAC	3 cut(s)	29, 152, 361
MalI	GATC	4 cut(s)	150, 238, 497, 562
MboI	GATC	4 cut(s)	148, 236, 495, 560
MboII	GAAGA	3 cut(s)	222, 419, 503
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	1 cut(s)	449
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	3 cut(s)	297, 410, 548
MluNI	TGGCCA	1 cut(s)	294
MnlI	CCTC	6 cut(s)	86, 139, 206, 435, 456, 459
Mox20I	TGGCCA	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	2 cut(s)	200, 492
Msp20I	TGGCCA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	3 cut(s)	263, 351, 399
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	2 cut(s)	351, 399
MvnI	CGCG	1 cut(s)	367
MwoI	GCNNNNNNNGC	6 cut(s)	52, 61, 84, 185, 329, 537
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	4 cut(s)	148, 236, 495, 560
NlaIII	CATG	2 cut(s)	121, 175
NlaIV	GGNNCC	2 cut(s)	446, 447
NmuCI	GTSAC	1 cut(s)	152
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	168, 521
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	4 cut(s)	45, 57, 195, 423
Psp6I	CCWGG	2 cut(s)	349, 397
PspFI	CCCAGC	1 cut(s)	556
PspGI	CCWGG	2 cut(s)	349, 397
PspN4I	GGNNCC	2 cut(s)	446, 447
PspOMI	GGGCCC	1 cut(s)	445
PspPI	GGNCC	3 cut(s)	395, 445, 446
PstI	CTGCAG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	560
PvuII	CAGCTG	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	200, 492
SatI	GCNGC	4 cut(s)	44, 56, 194, 422
Sau3AI	GATC	4 cut(s)	148, 236, 495, 560
Sau96I	GGNCC	3 cut(s)	395, 445, 446
ScrFI	CCNGG	3 cut(s)	263, 351, 399
SduI	GDGCHC	1 cut(s)	449
SetI	ASST	8 cut(s)	57, 164, 190, 217, 334, 361, 426, 558
SfaNI	GCATC	5 cut(s)	58, 166, 466, 467, 517
SfcI	CTRYAG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	395
Sse9I	AATT	3 cut(s)	297, 410, 548
SsiI	CCGC	3 cut(s)	9, 43, 367
StyD4I	CCNGG	3 cut(s)	261, 349, 397
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	4 cut(s)	13, 307, 461, 474
TasI	AATT	3 cut(s)	297, 410, 548
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	168, 521
Tru1I	TTAA	2 cut(s)	200, 492
Tru9I	TTAA	2 cut(s)	200, 492
TscAI	CASTG	2 cut(s)	94, 141
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	3 cut(s)	55, 193, 421
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	113, 160
TspRI	CASTG	2 cut(s)	94, 141
VpaK11BI	GGWCC	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	2 cut(s)	297, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.