Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007150

Physical Location & Seq

Genomic Coordinates Forward (+)

46709572 .. 46712822

Gene Structure 3251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0315500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGACAATACAAATGTATACGCCTACATTTCAACAATTGCTCTCTTGGTTTGCATCCCACCAACATTAATTATTGAAGGACTCCAACTGATGCAATATGGTTTTAGGGATGCAATGGCCAAGGGGCATTTGAGTAAAGGTCATGTGCAAAGAGTCGAGTTCCCGATCTTCTATTTGGTTTGCACGGTGGAACTTTTTATTGTTCTCCTTGGTACCGCTATAGACGTTAAAAGTTTGGGCATGAAGAGGCGGAGCCACGTTGGGGCATGGTGGGTCCCGTGCCCCACGGATCGGGTATCCGTTAATCCGACGGGTACGGATTTGGATCGAGGTATCAATGATCCGCCGGCGCCACCCTCGAGCTCTACAATCATACCTCAGCGTAGAGGTGGCAAATGGGCCGCTAGGCACAAGCATGGAACGGGTCCGGCAAGTTTAAAAGCGGCCCAGCATGGCCCAAGCCCGTTAGTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000820 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010498 GO:0010565 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030104 GO:0030163 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042592 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0047484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051603 GO:0061630 GO:0061659 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902005 GO:1902006 GO:2000070 GO:2000214 GO:2000215 GO:2000282 GO:2000283

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

158

Amino Acids

17.15

Weight (kDa)

9.51

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40830 AT2G40830 AT2G40830 AT2G40830
fragaria_vesca	FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690
malus_domestica	MD09G1209600.v1.1 MD17G1191600.v1.1
prunus_persica	Prupe.3G067600_v2.0.a1 Prupe.3G067600_v2.0.a1
pyrus_communis	pycom09g12590 pycom17g19850
rosa_chinensis	RchiOBHm_Chr6g0302621
rosa_laevigata	RLG00000011156
rosa_multiflora	Rmu_co8203528.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165510
rosa_rugosa	Rorug06G0315500
rosa_samantha	Rh6AG428800 Rh6BG473700 Rh6CG441100 Rh6DG427800
rosa_wichuraiana	Rw6G037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	212
AccB1I	GGYRCC	2 cut(s)	212, 349
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	5 cut(s)	216, 250, 344, 402, 443
AclWI	GGATC	3 cut(s)	297, 333, 335
AcoI	YGGCCR	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	350
AfaI	GTAC	2 cut(s)	214, 316
AfiI	CCNNNNNNNGG	3 cut(s)	262, 291, 469
AgsI	TTSAA	2 cut(s)	33, 77
AluBI	AGCT	1 cut(s)	363
AluI	AGCT	1 cut(s)	363
Alw21I	GWGCWC	1 cut(s)	365
AlwI	GGATC	3 cut(s)	297, 333, 335
Ama87I	CYCGRG	1 cut(s)	358
AoxI	GGCC	5 cut(s)	117, 399, 444, 454, 471
AseI	ATTAAT	1 cut(s)	68
Asp718I	GGTACC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	5 cut(s)	274, 399, 425, 445, 455
AvaI	CYCGRG	1 cut(s)	358
AvaII	GGWCC	2 cut(s)	274, 425
BaeGI	GKGCMC	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	119
BanI	GGYRCC	2 cut(s)	212, 349
BanII	GRGCYC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	365
BbvCI	CCTCAGC	1 cut(s)	378
BciVI	GTATCC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	405, 475
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	2 cut(s)	402, 444
BlsI	GCNGC	2 cut(s)	403, 445
Bme18I	GGWCC	2 cut(s)	274, 425
BmeT110I	CYCGRG	1 cut(s)	358
BmgT120I	GGNCC	5 cut(s)	274, 399, 425, 445, 455
BmiI	GGNNCC	6 cut(s)	214, 254, 275, 276, 351, 426
BmsI	GCATC	3 cut(s)	63, 81, 100
Bpu10I	CCTNAGC	1 cut(s)	378
BsaBI	GATNNNNATC	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	3 cut(s)	120, 208, 285
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 291, 469
Bse118I	RCCGGY	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	324
BseDI	CCNNGG	3 cut(s)	120, 208, 285
BseGI	GGATG	2 cut(s)	54, 115
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	262, 291, 469
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	284
BseYI	CCCAGC	1 cut(s)	447
BshFI	GGCC	5 cut(s)	119, 401, 446, 456, 473
BshNI	GGYRCC	2 cut(s)	212, 349
BsiHKAI	GWGCWC	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	2 cut(s)	347, 428
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	3 cut(s)	262, 291, 469
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	5 cut(s)	119, 401, 446, 456, 473
BsoBI	CYCGRG	1 cut(s)	358
Bsp1286I	GDGCHC	2 cut(s)	284, 365
Bsp143I	GATC	4 cut(s)	165, 289, 325, 340
BspACI	CCGC	5 cut(s)	216, 250, 344, 402, 443
BspANI	GGCC	5 cut(s)	119, 401, 446, 456, 473
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	6 cut(s)	214, 254, 275, 276, 351, 426
BspPI	GGATC	3 cut(s)	297, 333, 335
BspT107I	GGYRCC	2 cut(s)	212, 349
BsrDI	GCAATG	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	346
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	3 cut(s)	120, 208, 285
BssMI	GATC	4 cut(s)	165, 289, 325, 340
BssNAI	GTATAC	1 cut(s)	19
BssNI	GRCGYC	1 cut(s)	350
BssT1I	CCWWGG	2 cut(s)	120, 208
Bst1107I	GTATAC	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	378
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	54, 115
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	4 cut(s)	168, 292, 328, 343
BstMBI	GATC	4 cut(s)	165, 289, 325, 340
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	284
BstZ17I	GTATAC	1 cut(s)	19
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	5 cut(s)	119, 401, 446, 456, 473
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	54, 115
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	5 cut(s)	274, 399, 425, 445, 455
Csp6I	GTAC	2 cut(s)	213, 315
CviAII	CATG	5 cut(s)	143, 241, 267, 416, 452
CviJI	RGCY	8 cut(s)	119, 255, 363, 401, 446, 456, 462, 473
CviKI_1	RGCY	8 cut(s)	119, 255, 363, 401, 446, 456, 462, 473
CviQI	GTAC	2 cut(s)	213, 315
DdeI	CTNAG	1 cut(s)	378
DinI	GGCGCC	1 cut(s)	351
DpnI	GATC	4 cut(s)	167, 291, 327, 342
DpnII	GATC	4 cut(s)	165, 289, 325, 340
DraI	TTTAAA	1 cut(s)	438
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
EciI	GGCGGA	2 cut(s)	265, 333
Ecl136II	GAGCTC	1 cut(s)	363
Eco130I	CCWWGG	2 cut(s)	120, 208
Eco24I	GRGCYC	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	274, 425
Eco53kI	GAGCTC	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	358
EcoICRI	GAGCTC	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	120, 208
EcoT38I	GRGCYC	1 cut(s)	365
EgeI	GGCGCC	1 cut(s)	351
EheI	GGCGCC	1 cut(s)	351
ErhI	CCWWGG	2 cut(s)	120, 208
FaeI	CATG	5 cut(s)	146, 244, 270, 419, 455
FaiI	YATR	9 cut(s)	19, 99, 144, 221, 242, 268, 374, 417, 453
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	5 cut(s)	142, 240, 266, 415, 451
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	402, 444
FokI	GGATG	2 cut(s)	41, 122
FriOI	GRGCYC	1 cut(s)	365
Fsp4HI	GCNGC	2 cut(s)	402, 444
FspBI	CTAG	2 cut(s)	405, 475
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	2 cut(s)	402, 444
GsaI	CCCAGC	1 cut(s)	451
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	5 cut(s)	119, 401, 446, 456, 473
HapII	CCGG	2 cut(s)	347, 428
HhaI	GCGC	1 cut(s)	352
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	5 cut(s)	146, 244, 270, 419, 455
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	2 cut(s)	81, 153
HpaII	CCGG	2 cut(s)	347, 428
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	2 cut(s)	225, 258
HpyCH4V	TGCA	5 cut(s)	54, 94, 113, 148, 183
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	2 cut(s)	225, 258
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	5 cut(s)	146, 244, 270, 419, 455
HspAI	GCGC	1 cut(s)	350
KasI	GGCGCC	1 cut(s)	349
KflI	GGGWCCC	1 cut(s)	274
KpnI	GGTACC	1 cut(s)	216
KroI	GCCGGC	1 cut(s)	346
KroNI	GCCGGC	1 cut(s)	348
Kzo9I	GATC	4 cut(s)	165, 289, 325, 340
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	3 cut(s)	360, 441, 461
LweI	GCATC	3 cut(s)	63, 81, 100
MaeI	CTAG	2 cut(s)	405, 475
MaeII	ACGT	2 cut(s)	225, 258
MalI	GATC	4 cut(s)	167, 291, 327, 342
MboI	GATC	4 cut(s)	165, 289, 325, 340
MboII	GAAGA	2 cut(s)	160, 256
MfeI	CAATTG	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	284, 365
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	2 cut(s)	36, 69
MluNI	TGGCCA	1 cut(s)	119
Mly113I	GGCGCC	1 cut(s)	350
MlyI	GAGTC	2 cut(s)	75, 162
MmeI	TCCRAC	2 cut(s)	109, 332
MnlI	CCTC	5 cut(s)	240, 323, 367, 380, 387
Mox20I	TGGCCA	1 cut(s)	119
MreI	CGCCGGCG	1 cut(s)	346
MroNI	GCCGGC	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	4 cut(s)	68, 228, 303, 437
MslI	CAYNNNNRTG	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	119
MspI	CCGG	2 cut(s)	347, 428
MunI	CAATTG	1 cut(s)	36
NaeI	GCCGGC	1 cut(s)	348
NarI	GGCGCC	1 cut(s)	350
NdeII	GATC	4 cut(s)	165, 289, 325, 340
NgoMIV	GCCGGC	1 cut(s)	346
NlaIII	CATG	5 cut(s)	146, 244, 270, 419, 455
NlaIV	GGNNCC	6 cut(s)	214, 254, 275, 276, 351, 426
PaeR7I	CTCGAG	1 cut(s)	358
PdiI	GCCGGC	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	403, 445
PleI	GAGTC	2 cut(s)	75, 161
PluTI	GGCGCC	1 cut(s)	353
PpsI	GAGTC	2 cut(s)	75, 161
PpuMI	RGGWCCY	1 cut(s)	274
PshBI	ATTAAT	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	447
PspN4I	GGNNCC	6 cut(s)	214, 254, 275, 276, 351, 426
PspPI	GGNCC	5 cut(s)	274, 399, 425, 445, 455
PspPPI	RGGWCCY	1 cut(s)	274
PspXI	VCTCGAGB	1 cut(s)	358
RsaI	GTAC	2 cut(s)	214, 316
RsaNI	GTAC	2 cut(s)	213, 315
RseI	CAYNNNNRTG	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	365
SaqAI	TTAA	4 cut(s)	68, 228, 303, 437
SatI	GCNGC	2 cut(s)	402, 444
Sau3AI	GATC	4 cut(s)	165, 289, 325, 340
Sau96I	GGNCC	5 cut(s)	274, 399, 425, 445, 455
SchI	GAGTC	2 cut(s)	75, 162
SduI	GDGCHC	2 cut(s)	284, 365
SetI	ASST	7 cut(s)	142, 228, 261, 334, 365, 379, 391
SfaNI	GCATC	3 cut(s)	63, 81, 100
SfcI	CTRYAG	1 cut(s)	219
SfoI	GGCGCC	1 cut(s)	351
Sfr274I	CTCGAG	1 cut(s)	358
SgrAI	CRCCGGYG	1 cut(s)	346
SinI	GGWCC	2 cut(s)	274, 425
SlaI	CTCGAG	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	2 cut(s)	36, 69
SsiI	CCGC	5 cut(s)	216, 250, 344, 402, 443
SspDI	GGCGCC	1 cut(s)	349
SspMI	CTAG	2 cut(s)	405, 475
SstI	GAGCTC	1 cut(s)	365
StyI	CCWWGG	2 cut(s)	120, 208
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	2 cut(s)	228, 261
TaqI	TCGA	3 cut(s)	156, 328, 359
TasI	AATT	2 cut(s)	36, 69
TauI	GCSGC	2 cut(s)	404, 446
Tru1I	TTAA	4 cut(s)	68, 228, 303, 437
Tru9I	TTAA	4 cut(s)	68, 228, 303, 437
TspDTI	ATGAA	1 cut(s)	257
TspGWI	ACGGA	3 cut(s)	289, 302, 332
VpaK11BI	GGWCC	2 cut(s)	274, 425
VspI	ATTAAT	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	2 cut(s)	405, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.