Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007150

Physical Location & Seq

Genomic Coordinates Reverse (-)

7214886 .. 7217356

Gene Structure 2471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00165510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCAAGCGGTCCAAACACCCATTGGTGTTACAGATGCAGGCGGCCAACTCAGCTGCAAGGGCGAGATGCAGTTTGCCGAAACTGCAGTGGAGGATTTGTTCAAGAACTTGATGACATGGTTCATATCAGCCCACTGGATTTCTTTGGACCTCACAATGATGAGGATCGTGATAGGAGGTTTGGATTCATGGATGCTTTCTCAGCTTGGCAGCAGTTAACAGACAGAAGAGGTAGCGATAATATAAGGGGTTCTCCTTTGTTGATTTTTGGTGGCCAAATTCCTTTTCCATTGTCTGGGAATGGTGCATTTGAAGCTCTGTTTAATGGGTCTCCTGGAATAGGTGTAACACGGGGTAATGTGGGTGATTATTTTGTTGGTCCTGGCTTGGAAGAATTGTTTGAGCAGCTTTCAGCAAATGATAGGAGGGGCCCTCCCCCTGCACCGAGACTTTCAATTGATGCAATGCCAACTATTAAGATCACGAATAAGCATCTTCGTTCTGATTCGCATTGTCCTGTCTGCCAAGACAAATTTGAGCTGGGATCTGAAGCAAGGCAAATGCCATGTAAGCATGTATATCACTCAGATTGTATTGTACCATGGCTAGTCCAGCACAACTCATGCCCTGTTTGCCGCCAAGAACTGCATCCACAAGGATCCGGAAGTGGTCATAGCTCAAACATTAGAAGTGGTGGTTTTGGTAGTAATACCGGTGCAAGGGAAAGCCAAGGAAGACGCAATCCCTTTTCTTCTCTGTGGCCGTTTCGCTCGTCTAGTTCTAGCTCTAGTTCTAACCGTAACCCACCACATGAAAGTAGCTCGCCAACTACACGTGAAAATAGCAATCAAATGGGATATTCAGGATGGCCCTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000820 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010498 GO:0010565 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030104 GO:0030163 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042592 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0047484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051603 GO:0061630 GO:0061659 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902005 GO:1902006 GO:2000070 GO:2000214 GO:2000215 GO:2000282 GO:2000283

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

293

Amino Acids

32.36

Weight (kDa)

7.15

Isoelectric Point (pI)

66.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	6 - 37	6.1e-08	zinc-ribbon
zf-rbx1	PF12678	169 - 213	6.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	171 - 213	1e-13	Ring finger domain
zf-C3HC4_2	PF13923	172 - 212	5.3e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	172 - 199	1.5e-07	RING-like zinc finger
zf-C3HC4	PF00097	172 - 212	8.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	172 - 203	6.6e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40830 AT2G40830 AT2G40830 AT2G40830
fragaria_vesca	FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690
malus_domestica	MD09G1209600.v1.1 MD17G1191600.v1.1
prunus_persica	Prupe.3G067600_v2.0.a1 Prupe.3G067600_v2.0.a1
pyrus_communis	pycom09g12590 pycom17g19850
rosa_chinensis	RchiOBHm_Chr6g0302621
rosa_laevigata	RLG00000011156
rosa_multiflora	Rmu_co8203528.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165510
rosa_rugosa	Rorug06G0315500
rosa_samantha	Rh6AG428800 Rh6BG473700 Rh6CG441100 Rh6DG427800
rosa_wichuraiana	Rw6G037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccIII	TCCGGA	1 cut(s)	662
AciI	CCGC	3 cut(s)	9, 43, 637
AclWI	GGATC	4 cut(s)	174, 553, 654, 667
AcoI	YGGCCR	3 cut(s)	44, 274, 761
AcsI	RAATTY	2 cut(s)	279, 533
AcuI	CTGAAG	1 cut(s)	570
AcvI	CACGTG	1 cut(s)	836
AfaI	GTAC	1 cut(s)	600
AfiI	CCNNNNNNNGG	3 cut(s)	296, 341, 720
AflIII	ACRYGT	1 cut(s)	833
AgeI	ACCGGT	1 cut(s)	713
AgsI	TTSAA	3 cut(s)	104, 314, 456
AjnI	CCWGG	2 cut(s)	334, 382
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	8 cut(s)	55, 206, 317, 409, 541, 678, 786, 822
AluI	AGCT	8 cut(s)	55, 206, 317, 409, 541, 678, 786, 822
Alw26I	GTCTC	2 cut(s)	336, 442
AlwI	GGATC	4 cut(s)	174, 553, 654, 667
Aor13HI	TCCGGA	1 cut(s)	662
AoxI	GGCC	5 cut(s)	44, 274, 430, 761, 869
ApaI	GGGCCC	1 cut(s)	434
ApeKI	GCWGC	3 cut(s)	55, 211, 406
ApoI	RAATTY	2 cut(s)	279, 533
AsiGI	ACCGGT	1 cut(s)	713
AspS9I	GGNCC	6 cut(s)	11, 149, 380, 430, 431, 870
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	3 cut(s)	11, 149, 380
BaeGI	GKGCMC	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	276
BamHI	GGATCC	1 cut(s)	659
BanII	GRGCYC	1 cut(s)	434
BbrPI	CACGTG	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	742
BbvI	GCAGC	3 cut(s)	42, 223, 418
BccI	CCATC	1 cut(s)	861
BceAI	ACGGC	1 cut(s)	748
BciT130I	CCWGG	2 cut(s)	336, 384
BcoDI	GTCTC	2 cut(s)	336, 442
BfaI	CTAG	4 cut(s)	608, 777, 783, 789
BfmI	CTRYAG	1 cut(s)	85
BisI	GCNGC	5 cut(s)	44, 56, 212, 407, 637
BlsI	GCNGC	5 cut(s)	45, 57, 213, 408, 638
Bme1390I	CCNGG	2 cut(s)	336, 384
Bme18I	GGWCC	3 cut(s)	11, 149, 380
BmgT120I	GGNCC	6 cut(s)	11, 149, 380, 430, 431, 870
BmiI	GGNNCC	3 cut(s)	431, 432, 661
BmrFI	CCNGG	2 cut(s)	336, 384
BmsI	GCATC	6 cut(s)	26, 58, 184, 451, 502, 658
BpiI	GAAGAC	1 cut(s)	742
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
BsaAI	YACGTR	1 cut(s)	836
BsaBI	GATNNNNATC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	602, 730
BsaWI	WCCGGW	2 cut(s)	662, 713
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 341, 720
Bse118I	RCCGGY	1 cut(s)	713
Bse1I	ACTGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	662
BseBI	CCWGG	2 cut(s)	336, 384
BseDI	CCNNGG	2 cut(s)	602, 730
BseGI	GGATG	3 cut(s)	199, 649, 872
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	296, 341, 720
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	3 cut(s)	65, 216, 600
BseNI	ACTGG	1 cut(s)	141
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	3 cut(s)	42, 223, 418
BseYI	CCCAGC	1 cut(s)	541
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	5 cut(s)	46, 276, 432, 763, 871
BshTI	ACCGGT	1 cut(s)	713
BsiSI	CCGG	2 cut(s)	663, 714
BslI	CCNNNNNNNGG	3 cut(s)	296, 341, 720
BsmAI	GTCTC	2 cut(s)	336, 442
BsnI	GGCC	5 cut(s)	46, 276, 432, 763, 871
Bso31I	GGTCTC	1 cut(s)	336
Bsp120I	GGGCCC	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp13I	TCCGGA	1 cut(s)	662
Bsp143I	GATC	4 cut(s)	166, 480, 545, 659
Bsp19I	CCATGG	1 cut(s)	602
BspACI	CCGC	3 cut(s)	9, 43, 637
BspANI	GGCC	5 cut(s)	46, 276, 432, 763, 871
BspCNI	CTCAG	3 cut(s)	64, 215, 599
BspEI	TCCGGA	1 cut(s)	662
BspLI	GGNNCC	3 cut(s)	431, 432, 661
BspMAI	CTGCAG	1 cut(s)	89
BspPI	GGATC	4 cut(s)	174, 553, 654, 667
BspTNI	GGTCTC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	471
BsrFI	RCCGGY	1 cut(s)	713
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	713
BssECI	CCNNGG	2 cut(s)	602, 730
BssMI	GATC	4 cut(s)	166, 480, 545, 659
BssT1I	CCWWGG	2 cut(s)	602, 730
Bst2UI	CCWGG	2 cut(s)	336, 384
Bst4CI	ACNGT	1 cut(s)	800
Bst6I	CTCTTC	1 cut(s)	223
BstBAI	YACGTR	1 cut(s)	836
BstC8I	GCNNGC	2 cut(s)	41, 824
BstDEI	CTNAG	3 cut(s)	51, 202, 586
BstDSI	CCRYGG	1 cut(s)	602
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	199, 649, 872
BstKTI	GATC	4 cut(s)	169, 483, 548, 662
BstMAI	GTCTC	2 cut(s)	336, 442
BstMBI	GATC	4 cut(s)	166, 480, 545, 659
BstMWI	GCNNNNNNNGC	8 cut(s)	52, 61, 84, 203, 314, 571, 613, 633
BstNI	CCWGG	2 cut(s)	336, 384
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	2 cut(s)	334, 382
BstSFI	CTRYAG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	434
BstV1I	GCAGC	3 cut(s)	42, 223, 418
BstV2I	GAAGAC	1 cut(s)	742
BstX2I	RGATCY	2 cut(s)	545, 659
BstYI	RGATCY	2 cut(s)	545, 659
BsuRI	GGCC	5 cut(s)	46, 276, 432, 763, 871
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	3 cut(s)	199, 649, 872
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	94, 134
Cac8I	GCNNGC	2 cut(s)	41, 824
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	6 cut(s)	11, 149, 380, 430, 431, 870
CseI	GACGC	1 cut(s)	747
Csp6I	GTAC	1 cut(s)	599
CspAI	ACCGGT	1 cut(s)	713
CviAII	CATG	7 cut(s)	118, 190, 567, 575, 603, 624, 812
CviQI	GTAC	1 cut(s)	599
DdeI	CTNAG	3 cut(s)	51, 202, 586
DpnI	GATC	4 cut(s)	168, 482, 547, 661
DpnII	GATC	4 cut(s)	166, 480, 545, 659
EaeI	YGGCCR	3 cut(s)	44, 274, 761
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Eco130I	CCWWGG	2 cut(s)	602, 730
Eco24I	GRGCYC	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	336
Eco47I	GGWCC	3 cut(s)	11, 149, 380
Eco57I	CTGAAG	1 cut(s)	570
Eco72I	CACGTG	1 cut(s)	836
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoO109I	RGGNCCY	2 cut(s)	430, 431
EcoRII	CCWGG	2 cut(s)	334, 382
EcoT14I	CCWWGG	2 cut(s)	602, 730
EcoT38I	GRGCYC	1 cut(s)	434
ErhI	CCWWGG	2 cut(s)	602, 730
FaeI	CATG	7 cut(s)	121, 193, 570, 578, 606, 627, 815
FatI	CATG	7 cut(s)	117, 189, 566, 574, 602, 623, 811
Fnu4HI	GCNGC	5 cut(s)	44, 56, 212, 407, 637
FokI	GGATG	2 cut(s)	206, 636
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	5 cut(s)	44, 56, 212, 407, 637
FspBI	CTAG	4 cut(s)	608, 777, 783, 789
GluI	GCNGC	5 cut(s)	44, 56, 212, 407, 637
GsaI	CCCAGC	1 cut(s)	545
HaeIII	GGCC	5 cut(s)	46, 276, 432, 763, 871
HapII	CCGG	2 cut(s)	663, 714
HgaI	GACGC	1 cut(s)	747
Hin1II	CATG	7 cut(s)	121, 193, 570, 578, 606, 627, 815
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HinfI	GANTC	2 cut(s)	186, 506
HpaI	GTTAAC	1 cut(s)	219
HpaII	CCGG	2 cut(s)	663, 714
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	3 cut(s)	505, 550, 589
Hpy188III	TCNNGA	5 cut(s)	104, 170, 484, 663, 864
Hpy8I	GTNNAC	1 cut(s)	219
HpyCH4III	ACNGT	1 cut(s)	800
HpyCH4IV	ACGT	1 cut(s)	835
HpyCH4V	TGCA	9 cut(s)	39, 58, 71, 87, 308, 443, 464, 649, 719
HpyF10VI	GCNNNNNNNGC	8 cut(s)	52, 61, 84, 203, 314, 571, 613, 633
HpyF3I	CTNAG	3 cut(s)	51, 202, 586
HpySE526I	ACGT	1 cut(s)	835
Hsp92II	CATG	7 cut(s)	121, 193, 570, 578, 606, 627, 815
Kpn2I	TCCGGA	1 cut(s)	662
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	4 cut(s)	166, 480, 545, 659
Lsp1109I	GCAGC	3 cut(s)	42, 223, 418
LweI	GCATC	6 cut(s)	26, 58, 184, 451, 502, 658
MaeI	CTAG	4 cut(s)	608, 777, 783, 789
MaeII	ACGT	1 cut(s)	835
MaeIII	GTNAC	3 cut(s)	29, 346, 800
MalI	GATC	4 cut(s)	168, 482, 547, 661
MboI	GATC	4 cut(s)	166, 480, 545, 659
MboII	GAAGA	5 cut(s)	240, 404, 488, 744, 747
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	2 cut(s)	545, 659
MhlI	GDGCHC	1 cut(s)	434
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	4 cut(s)	279, 395, 456, 533
MluNI	TGGCCA	1 cut(s)	276
MnlI	CCTC	7 cut(s)	86, 157, 162, 171, 224, 420, 444
Mox20I	TGGCCA	1 cut(s)	276
MroI	TCCGGA	1 cut(s)	662
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	3 cut(s)	218, 324, 477
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	2 cut(s)	663, 714
MspR9I	CCNGG	2 cut(s)	336, 384
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	2 cut(s)	336, 384
MwoI	GCNNNNNNNGC	8 cut(s)	52, 61, 84, 203, 314, 571, 613, 633
NcoI	CCATGG	1 cut(s)	602
NdeII	GATC	4 cut(s)	166, 480, 545, 659
NlaIII	CATG	7 cut(s)	121, 193, 570, 578, 606, 627, 815
NlaIV	GGNNCC	3 cut(s)	431, 432, 661
NspI	RCATGY	1 cut(s)	578
PfeI	GAWTC	2 cut(s)	186, 506
PflMI	CCANNNNNTGG	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	334
PinAI	ACCGGT	1 cut(s)	713
PkrI	GCNGC	5 cut(s)	45, 57, 213, 408, 638
PmaCI	CACGTG	1 cut(s)	836
PmlI	CACGTG	1 cut(s)	836
Ppu21I	YACGTR	1 cut(s)	836
Psp6I	CCWGG	2 cut(s)	334, 382
PspCI	CACGTG	1 cut(s)	836
PspFI	CCCAGC	1 cut(s)	541
PspGI	CCWGG	2 cut(s)	334, 382
PspN4I	GGNNCC	3 cut(s)	431, 432, 661
PspOMI	GGGCCC	1 cut(s)	430
PspPI	GGNCC	6 cut(s)	11, 149, 380, 430, 431, 870
PstI	CTGCAG	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	545, 659
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	600
RsaNI	GTAC	1 cut(s)	599
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	3 cut(s)	218, 324, 477
SatI	GCNGC	5 cut(s)	44, 56, 212, 407, 637
Sau3AI	GATC	4 cut(s)	166, 480, 545, 659
Sau96I	GGNCC	6 cut(s)	11, 149, 380, 430, 431, 870
ScrFI	CCNGG	2 cut(s)	336, 384
SduI	GDGCHC	1 cut(s)	434
SfaNI	GCATC	6 cut(s)	26, 58, 184, 451, 502, 658
SfcI	CTRYAG	1 cut(s)	85
SinI	GGWCC	3 cut(s)	11, 149, 380
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	4 cut(s)	279, 395, 456, 533
SsiI	CCGC	3 cut(s)	9, 43, 637
SspMI	CTAG	4 cut(s)	608, 777, 783, 789
StyD4I	CCNGG	2 cut(s)	334, 382
StyI	CCWWGG	2 cut(s)	602, 730
TaaI	ACNGT	1 cut(s)	800
TaiI	ACGT	1 cut(s)	838
TasI	AATT	4 cut(s)	279, 395, 456, 533
TauI	GCSGC	2 cut(s)	46, 639
TfiI	GAWTC	2 cut(s)	186, 506
Tru1I	TTAA	3 cut(s)	218, 324, 477
Tru9I	TTAA	3 cut(s)	218, 324, 477
TscAI	CASTG	2 cut(s)	94, 141
TseI	GCWGC	3 cut(s)	55, 211, 406
TspDTI	ATGAA	3 cut(s)	113, 178, 828
TspRI	CASTG	2 cut(s)	94, 141
Van91I	CCANNNNNTGG	1 cut(s)	296
VpaK11BI	GGWCC	3 cut(s)	11, 149, 380
XagI	CCTNNNNNAGG	1 cut(s)	339
XapI	RAATTY	2 cut(s)	279, 533
XceI	RCATGY	1 cut(s)	578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XspI	CTAG	4 cut(s)	608, 777, 783, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.