Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007150

Physical Location & Seq

Genomic Coordinates Reverse (-)

4882163 .. 4884526

Gene Structure 2364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G067600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTCAAGTGGCCGAAACACCCATTGGTGTTACAATTGCAGGCGTCCGGTTCGTCTGCAAGGGCGAGATGCAGTTTGCCCAAGCTGCGATGGAGGATTTATTCAAGAACTCAATGATATGGTTCATGTCAGTCCACTGGATTTCTTTGGACTGGACAATGATGATGATCATGACAGGAGGTTTGGGTTCATGGAAGCTTTCTCAGCCTGGCAGCAATCGACAGACAGAAGACGTAGCGATATCAGGGGAAGATCAGATATAGCTCCTGAACGTAACCCGGCATTTACTCCTCTGTTGATCTTTGGTGGCCAAATTCCTTTTCGACTGTCTGGGAATGGTGCATTCGAAGCTTTTTTCAATGGCTCTCCTGGCATAAGTGTGACGCGGGGTAATGTGGGGGATTATTTTGTAGGTCCTGGCTTGGAAGAACTGTTTGAGCAGCTTTCAGCTAATGACCGGCGAGGCCCTCCTCCAGCATCCAGAGTTTCAATTGATGCAATGCCTACTATTAAGATCACAAATAGGCATCTTCGTTCTGATTCACACTGCCCTGTTTGCAAAGACAAGTTCGAGCTTGGATCTGAAGCAAGGCAAATGCCCTGTAACCATCTATATCACACAGATTGTATTGTACCATGGCTAGTCCAACACAACTCATGCCCTGTTTGCCGCCAAGAACTGCCTCTGCAAGGAGCCGCAAGTGGTGGTAGCTCGAATGGTCGAAGTAGAAGCAGTAGTTTTGGTAGCAATACCAATGGAAGGGAGGGTGGTAGAGAAAACCAAGGAAGGAGAAATCCTTTCTCTTATTTGTGGCCATTTCGCTCATCTGGTGCCAGCTCTAGCTCTAGCCATACCCATACCCATACCCATACCTCTAATCATAACCCAACAGCCGAAAGTAGCTCATCGACTATGCGTGAAAACAATAATCAGATGGGGTATTCAGGATGGCCATTTGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000820 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010498 GO:0010565 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030104 GO:0030163 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042592 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0047484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051603 GO:0061630 GO:0061659 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902005 GO:1902006 GO:2000070 GO:2000214 GO:2000215 GO:2000282 GO:2000283

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

322

Amino Acids

35.68

Weight (kDa)

7.2

Isoelectric Point (pI)

64.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40830 AT2G40830 AT2G40830 AT2G40830
fragaria_vesca	FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690
malus_domestica	MD09G1209600.v1.1 MD17G1191600.v1.1
prunus_persica	Prupe.3G067600_v2.0.a1 Prupe.3G067600_v2.0.a1
pyrus_communis	pycom09g12590 pycom17g19850
rosa_chinensis	RchiOBHm_Chr6g0302621
rosa_laevigata	RLG00000011156
rosa_multiflora	Rmu_co8203528.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165510
rosa_rugosa	Rorug06G0315500
rosa_samantha	Rh6AG428800 Rh6BG473700 Rh6CG441100 Rh6DG427800
rosa_wichuraiana	Rw6G037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	830
AccII	CGCG	1 cut(s)	385
AciI	CCGC	3 cut(s)	385, 670, 696
AclWI	GGATC	1 cut(s)	586
AcoI	YGGCCR	4 cut(s)	10, 307, 812, 950
AcsI	RAATTY	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	603
AcyI	GRCGYC	1 cut(s)	43
AfaI	GTAC	1 cut(s)	633
AfiI	CCNNNNNNNGG	2 cut(s)	689, 759
AgsI	TTSAA	3 cut(s)	104, 358, 489
AjnI	CCWGG	3 cut(s)	206, 367, 415
AjuI	GAANNNNNNNTTGG	4 cut(s)	7, 39, 303, 335
AlwI	GGATC	1 cut(s)	586
AoxI	GGCC	5 cut(s)	10, 307, 463, 812, 950
ApeKI	GCWGC	3 cut(s)	84, 211, 439
ApoI	RAATTY	1 cut(s)	312
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspS9I	GGNCC	2 cut(s)	413, 464
AsuC2I	CCSGG	1 cut(s)	278
AsuII	TTCGAA	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	413
BalI	TGGCCA	3 cut(s)	309, 814, 952
BanI	GGYRCC	1 cut(s)	830
BbsI	GAAGAC	1 cut(s)	235
BbvI	GCAGC	3 cut(s)	71, 223, 451
BccI	CCATC	4 cut(s)	83, 615, 928, 942
BciT130I	CCWGG	3 cut(s)	208, 369, 417
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	278
BfaI	CTAG	3 cut(s)	641, 840, 846
BisI	GCNGC	5 cut(s)	85, 212, 440, 670, 696
BlsI	GCNGC	5 cut(s)	86, 213, 441, 671, 697
Bme1390I	CCNGG	4 cut(s)	208, 278, 369, 417
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	413, 464
BmiI	GGNNCC	2 cut(s)	694, 832
BmrFI	CCNGG	4 cut(s)	208, 278, 369, 417
BmsI	GCATC	4 cut(s)	58, 484, 485, 535
BpiI	GAAGAC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	456
Bpu14I	TTCGAA	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	635, 781
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	2 cut(s)	689, 759
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	2 cut(s)	141, 156
Bse3DI	GCAATG	1 cut(s)	504
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	3 cut(s)	208, 369, 417
BseDI	CCNNGG	2 cut(s)	635, 781
BseGI	GGATG	2 cut(s)	476, 953
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	689, 759
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	141, 156
BseRI	GAGGAG	2 cut(s)	279, 459
BseXI	GCAGC	3 cut(s)	71, 223, 451
Bsh1236I	CGCG	1 cut(s)	385
BshFI	GGCC	5 cut(s)	12, 309, 465, 814, 952
BshNI	GGYRCC	1 cut(s)	830
BsiSI	CCGG	3 cut(s)	47, 278, 457
BslI	CCNNNNNNNGG	2 cut(s)	689, 759
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	5 cut(s)	12, 309, 465, 814, 952
Bsp119I	TTCGAA	1 cut(s)	345
Bsp143I	GATC	5 cut(s)	166, 251, 297, 513, 578
Bsp19I	CCATGG	1 cut(s)	635
BspACI	CCGC	3 cut(s)	385, 670, 696
BspANI	GGCC	5 cut(s)	12, 309, 465, 814, 952
BspCNI	CTCAG	1 cut(s)	215
BspFNI	CGCG	1 cut(s)	385
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	694, 832
BspPI	GGATC	1 cut(s)	586
BspT104I	TTCGAA	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	830
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	141, 156
BssAI	RCCGGY	1 cut(s)	456
BssECI	CCNNGG	2 cut(s)	635, 781
BssMI	GATC	5 cut(s)	166, 251, 297, 513, 578
BssNI	GRCGYC	1 cut(s)	43
BssT1I	CCWWGG	2 cut(s)	635, 781
Bst2UI	CCWGG	3 cut(s)	208, 369, 417
Bst4CI	ACNGT	2 cut(s)	327, 432
BstACI	GRCGYC	1 cut(s)	43
BstBI	TTCGAA	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	41, 835
BstDEI	CTNAG	1 cut(s)	202
BstDSI	CCRYGG	1 cut(s)	635
BstENI	CCTNNNNNAGG	1 cut(s)	687
BstF5I	GGATG	2 cut(s)	476, 953
BstFNI	CGCG	1 cut(s)	385
BstKTI	GATC	5 cut(s)	169, 254, 300, 516, 581
BstMBI	GATC	5 cut(s)	166, 251, 297, 513, 578
BstMWI	GCNNNNNNNGC	6 cut(s)	84, 203, 347, 369, 555, 666
BstNI	CCWGG	3 cut(s)	208, 369, 417
BstSCI	CCNGG	4 cut(s)	206, 276, 367, 415
BstUI	CGCG	1 cut(s)	385
BstV1I	GCAGC	3 cut(s)	71, 223, 451
BstV2I	GAAGAC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BsuRI	GGCC	5 cut(s)	12, 309, 465, 814, 952
BtgI	CCRYGG	1 cut(s)	635
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	476, 953
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	134, 544
Cac8I	GCNNGC	2 cut(s)	41, 835
CciI	TCATGA	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	2 cut(s)	413, 464
CseI	GACGC	2 cut(s)	32, 391
Csp6I	GTAC	1 cut(s)	632
CviAII	CATG	5 cut(s)	125, 170, 190, 636, 657
CviQI	GTAC	1 cut(s)	632
DdeI	CTNAG	1 cut(s)	202
DpnI	GATC	5 cut(s)	168, 253, 299, 515, 580
DpnII	GATC	5 cut(s)	166, 251, 297, 513, 578
EaeI	YGGCCR	4 cut(s)	10, 307, 812, 950
Eco130I	CCWWGG	2 cut(s)	635, 781
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	687
EcoO109I	RGGNCCY	2 cut(s)	413, 464
EcoRII	CCWGG	3 cut(s)	206, 367, 415
EcoRV	GATATC	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	635, 781
ErhI	CCWWGG	2 cut(s)	635, 781
FaeI	CATG	5 cut(s)	128, 173, 193, 639, 660
FatI	CATG	5 cut(s)	124, 169, 189, 635, 656
FauI	CCCGC	1 cut(s)	378
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	5 cut(s)	85, 212, 440, 670, 696
FokI	GGATG	2 cut(s)	463, 960
Fsp4HI	GCNGC	5 cut(s)	85, 212, 440, 670, 696
FspBI	CTAG	3 cut(s)	641, 840, 846
GluI	GCNGC	5 cut(s)	85, 212, 440, 670, 696
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	5 cut(s)	12, 309, 465, 814, 952
HapII	CCGG	3 cut(s)	47, 278, 457
HgaI	GACGC	2 cut(s)	32, 391
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	5 cut(s)	128, 173, 193, 639, 660
HindIII	AAGCTT	2 cut(s)	195, 348
HinfI	GANTC	1 cut(s)	539
HpaII	CCGG	3 cut(s)	47, 278, 457
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	4 cut(s)	256, 538, 583, 933
Hpy188III	TCNNGA	5 cut(s)	104, 170, 266, 480, 945
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	753, 780
HpyCH4III	ACNGT	2 cut(s)	327, 432
HpyCH4IV	ACGT	2 cut(s)	232, 271
HpyCH4V	TGCA	7 cut(s)	39, 58, 71, 341, 497, 558, 688
HpyF10VI	GCNNNNNNNGC	6 cut(s)	84, 203, 347, 369, 555, 666
HpyF3I	CTNAG	1 cut(s)	202
HpySE526I	ACGT	2 cut(s)	232, 271
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	5 cut(s)	128, 173, 193, 639, 660
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	166, 251, 297, 513, 578
LmnI	GCTCC	2 cut(s)	268, 692
Lsp1109I	GCAGC	3 cut(s)	71, 223, 451
LweI	GCATC	4 cut(s)	58, 484, 485, 535
MaeI	CTAG	3 cut(s)	641, 840, 846
MaeII	ACGT	2 cut(s)	232, 271
MaeIII	GTNAC	4 cut(s)	29, 272, 379, 602
MalI	GATC	5 cut(s)	168, 253, 299, 515, 580
MboI	GATC	5 cut(s)	166, 251, 297, 513, 578
MboII	GAAGA	4 cut(s)	240, 261, 437, 521
MfeI	CAATTG	2 cut(s)	34, 489
MflI	RGATCY	1 cut(s)	578
MlsI	TGGCCA	3 cut(s)	309, 814, 952
MluCI	AATT	3 cut(s)	34, 312, 489
MluNI	TGGCCA	3 cut(s)	309, 814, 952
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	9 cut(s)	86, 171, 300, 455, 477, 480, 693, 757, 883
Mox20I	TGGCCA	3 cut(s)	309, 814, 952
MscI	TGGCCA	3 cut(s)	309, 814, 952
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	3 cut(s)	309, 814, 952
MspI	CCGG	3 cut(s)	47, 278, 457
MspR9I	CCNGG	4 cut(s)	208, 278, 369, 417
MunI	CAATTG	2 cut(s)	34, 489
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	3 cut(s)	208, 369, 417
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	6 cut(s)	84, 203, 347, 369, 555, 666
NciI	CCSGG	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	635
NdeII	GATC	5 cut(s)	166, 251, 297, 513, 578
NlaIII	CATG	5 cut(s)	128, 173, 193, 639, 660
NlaIV	GGNNCC	2 cut(s)	694, 832
NmuCI	GTSAC	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	345
PagI	TCATGA	1 cut(s)	169
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	5 cut(s)	86, 213, 441, 671, 697
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	3 cut(s)	206, 367, 415
PspGI	CCWGG	3 cut(s)	206, 367, 415
PspN4I	GGNNCC	2 cut(s)	694, 832
PspPI	GGNCC	2 cut(s)	413, 464
PspPPI	RGGWCCY	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	578
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	5 cut(s)	85, 212, 440, 670, 696
Sau3AI	GATC	5 cut(s)	166, 251, 297, 513, 578
Sau96I	GGNCC	2 cut(s)	413, 464
ScrFI	CCNGG	4 cut(s)	208, 278, 369, 417
SfaNI	GCATC	4 cut(s)	58, 484, 485, 535
SfuI	TTCGAA	1 cut(s)	345
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	34, 312, 489
SsiI	CCGC	3 cut(s)	385, 670, 696
SspMI	CTAG	3 cut(s)	641, 840, 846
StyD4I	CCNGG	4 cut(s)	206, 276, 367, 415
StyI	CCWWGG	2 cut(s)	635, 781
TaaI	ACNGT	2 cut(s)	327, 432
TaiI	ACGT	2 cut(s)	235, 274
TaqI	TCGA	7 cut(s)	218, 322, 345, 570, 713, 721, 908
TasI	AATT	3 cut(s)	34, 312, 489
TauI	GCSGC	2 cut(s)	672, 698
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	2 cut(s)	141, 551
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	3 cut(s)	84, 211, 439
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	113, 178
TspRI	CASTG	2 cut(s)	141, 551
VpaK11BI	GGWCC	1 cut(s)	413
XagI	CCTNNNNNAGG	1 cut(s)	687
XapI	RAATTY	1 cut(s)	312
XspI	CTAG	3 cut(s)	641, 840, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.