Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007150

Physical Location & Seq

Genomic Coordinates Reverse (-)

7171693 .. 7172562

Gene Structure 870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCAAGCGGTCGAATCACCCACTGGTGTTACGGATGCAGGCGGCCAACCCAGCTGCAAGGGCGAGATGCAGTTTGCCGAAACTGCAGTGGAGGATTTGTTCAAGAACTTGATGACATGGCACTGGATTTCTTTGGACCTCACAATGATGAGGATCGTGATAGGAGGTTTGGATTCATGGATGCTTTCTCAGCTTGGCAGCAGTTAACAGACCGAAGAGGTAGCAATAATATAAGGGGTTCTCCTTTGTTGATTTTTGGTGGCCAAATTCCTTTTCCATTGTCTGGGAATGGTGCATTTGAAGCTCTGTTTAATGGGTCTCCTGGAATAGGTGTAACGCGGGGTAATGTGGGTGATTATTTTGTTGGTCCTGGCTTGGAAGAATTGTTTGAGCAGCTTTCAGCAAATGATAGGAGGGGCCCTCCCCCTGCACCGAGGCTTTCAATCGATGCAATGCCAACTATTAAGATCACGAATAAGCATCTTCGTTCTGATTCGCATTGCCCTGTTTGCCAAGACAAATTTGAGCTGGGATCTGAAGCAAGGCAAATGCCATGTAAGCATGTATATCACTCAGATTGTATTGTACCATGGCTAGTCCAGCACAACTCATGCCCTGTTTGCCGCCAAGAACTGCATCCACAAGGATCTGGAAGTGGTCATAGCTCAAACATTAGAAGTGGTGGTTTTGGTAGTAATACCGGTGGAAGGGAAAGCCAAGGAAGACGAAATCCTTTTTCTTCTCTGTGGCGGTTTCGCTCGTCTAGTTCTAGCTCTAGTTCTAACCGTAACCCACCGCATGAAAGTAGCCCGCCAACTACGCGTGAAAATAGCAATCAAATGGGGTATTCAGGATGGCCCTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000820 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010498 GO:0010565 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030104 GO:0030163 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042592 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0047484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051603 GO:0061630 GO:0061659 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902005 GO:1902006 GO:2000070 GO:2000214 GO:2000215 GO:2000282 GO:2000283

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

290

Amino Acids

31.91

Weight (kDa)

8.08

Isoelectric Point (pI)

65.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	7 - 37	7.1e-07	zinc-ribbon
zf-rbx1	PF12678	165 - 209	6.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	167 - 209	1e-13	Ring finger domain
zf-C3HC4_2	PF13923	168 - 208	5.2e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	168 - 195	1.5e-07	RING-like zinc finger
zf-C3HC4	PF00097	168 - 208	8e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	168 - 199	6.5e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40830 AT2G40830 AT2G40830 AT2G40830
fragaria_vesca	FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690
malus_domestica	MD09G1209600.v1.1 MD17G1191600.v1.1
prunus_persica	Prupe.3G067600_v2.0.a1 Prupe.3G067600_v2.0.a1
pyrus_communis	pycom09g12590 pycom17g19850
rosa_chinensis	RchiOBHm_Chr6g0302621
rosa_laevigata	RLG00000011156
rosa_multiflora	Rmu_co8203528.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165510
rosa_rugosa	Rorug06G0315500
rosa_samantha	Rh6AG428800 Rh6BG473700 Rh6CG441100 Rh6DG427800
rosa_wichuraiana	Rw6G037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	284
AccII	CGCG	2 cut(s)	340, 823
AciI	CCGC	7 cut(s)	9, 43, 340, 625, 751, 797, 812
AclWI	GGATC	3 cut(s)	162, 541, 655
AcoI	YGGCCR	2 cut(s)	44, 262
AcsI	RAATTY	2 cut(s)	267, 521
AcuI	CTGAAG	1 cut(s)	558
AfaI	GTAC	1 cut(s)	588
AfiI	CCNNNNNNNGG	3 cut(s)	284, 329, 708
AflIII	ACRYGT	1 cut(s)	821
AgeI	ACCGGT	1 cut(s)	701
AgsI	TTSAA	3 cut(s)	104, 302, 444
AjnI	CCWGG	2 cut(s)	322, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	7 cut(s)	55, 194, 305, 397, 529, 666, 774
AluI	AGCT	7 cut(s)	55, 194, 305, 397, 529, 666, 774
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	3 cut(s)	162, 541, 655
AoxI	GGCC	4 cut(s)	44, 262, 418, 857
ApaI	GGGCCC	1 cut(s)	422
ApeKI	GCWGC	3 cut(s)	55, 199, 394
ApoI	RAATTY	2 cut(s)	267, 521
AsiGI	ACCGGT	1 cut(s)	701
AspS9I	GGNCC	5 cut(s)	137, 368, 418, 419, 858
AsuHPI	GGTGA	2 cut(s)	10, 365
AvaII	GGWCC	2 cut(s)	137, 368
BaeGI	GKGCMC	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	730
BbvI	GCAGC	3 cut(s)	42, 211, 406
BccI	CCATC	1 cut(s)	849
BciT130I	CCWGG	2 cut(s)	324, 372
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	4 cut(s)	596, 765, 771, 777
BfmI	CTRYAG	1 cut(s)	85
BisI	GCNGC	5 cut(s)	44, 56, 200, 395, 625
BlsI	GCNGC	5 cut(s)	45, 57, 201, 396, 626
Bme1390I	CCNGG	2 cut(s)	324, 372
Bme18I	GGWCC	2 cut(s)	137, 368
BmgT120I	GGNCC	5 cut(s)	137, 368, 418, 419, 858
BmiI	GGNNCC	2 cut(s)	419, 420
BmrFI	CCNGG	2 cut(s)	324, 372
BmsI	GCATC	6 cut(s)	26, 58, 172, 439, 490, 646
BpiI	GAAGAC	1 cut(s)	730
BplI	GAGNNNNNCTC	2 cut(s)	406, 438
Bsa29I	ATCGAT	1 cut(s)	447
BsaBI	GATNNNNATC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	434, 590, 718
BsaWI	WCCGGW	1 cut(s)	701
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 329, 708
Bse118I	RCCGGY	1 cut(s)	701
Bse1I	ACTGG	2 cut(s)	29, 129
Bse3DI	GCAATG	2 cut(s)	459, 499
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	324, 372
BseCI	ATCGAT	1 cut(s)	447
BseDI	CCNNGG	3 cut(s)	434, 590, 718
BseGI	GGATG	4 cut(s)	41, 187, 637, 860
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	3 cut(s)	284, 329, 708
BseMI	GCAATG	2 cut(s)	459, 499
BseMII	CTCAG	2 cut(s)	204, 588
BseNI	ACTGG	2 cut(s)	29, 129
BseSI	GKGCMC	1 cut(s)	422
BseXI	GCAGC	3 cut(s)	42, 211, 406
BseYI	CCCAGC	2 cut(s)	51, 529
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	2 cut(s)	340, 823
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	4 cut(s)	46, 264, 420, 859
BshTI	ACCGGT	1 cut(s)	701
BshVI	ATCGAT	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	702
BslI	CCNNNNNNNGG	3 cut(s)	284, 329, 708
BsmAI	GTCTC	1 cut(s)	324
BsnI	GGCC	4 cut(s)	46, 264, 420, 859
Bso31I	GGTCTC	1 cut(s)	324
Bsp120I	GGGCCC	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	4 cut(s)	154, 468, 533, 647
Bsp19I	CCATGG	1 cut(s)	590
BspACI	CCGC	7 cut(s)	9, 43, 340, 625, 751, 797, 812
BspANI	GGCC	4 cut(s)	46, 264, 420, 859
BspCNI	CTCAG	2 cut(s)	203, 587
BspDI	ATCGAT	1 cut(s)	447
BspFNI	CGCG	2 cut(s)	340, 823
BspLI	GGNNCC	2 cut(s)	419, 420
BspMAI	CTGCAG	1 cut(s)	89
BspPI	GGATC	3 cut(s)	162, 541, 655
BspTNI	GGTCTC	1 cut(s)	324
BsrDI	GCAATG	2 cut(s)	459, 499
BsrFI	RCCGGY	1 cut(s)	701
BsrI	ACTGG	2 cut(s)	29, 129
BssAI	RCCGGY	1 cut(s)	701
BssECI	CCNNGG	3 cut(s)	434, 590, 718
BssMI	GATC	4 cut(s)	154, 468, 533, 647
BssT1I	CCWWGG	2 cut(s)	590, 718
Bst2UI	CCWGG	2 cut(s)	324, 372
Bst4CI	ACNGT	1 cut(s)	788
Bst6I	CTCTTC	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	41, 812
BstDEI	CTNAG	2 cut(s)	190, 574
BstDSI	CCRYGG	1 cut(s)	590
BstENI	CCTNNNNNAGG	1 cut(s)	327
BstF5I	GGATG	4 cut(s)	41, 187, 637, 860
BstFNI	CGCG	2 cut(s)	340, 823
BstKTI	GATC	4 cut(s)	157, 471, 536, 650
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	4 cut(s)	154, 468, 533, 647
BstMCI	CGRYCG	1 cut(s)	13
BstNI	CCWGG	2 cut(s)	324, 372
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	2 cut(s)	322, 370
BstSFI	CTRYAG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	422
BstUI	CGCG	2 cut(s)	340, 823
BstV1I	GCAGC	3 cut(s)	42, 211, 406
BstV2I	GAAGAC	1 cut(s)	730
BstX2I	RGATCY	2 cut(s)	533, 647
BstYI	RGATCY	2 cut(s)	533, 647
Bsu15I	ATCGAT	1 cut(s)	447
BsuRI	GGCC	4 cut(s)	46, 264, 420, 859
BsuTUI	ATCGAT	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	590
BtsCI	GGATG	4 cut(s)	41, 187, 637, 860
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	3 cut(s)	22, 94, 122
Cac8I	GCNNGC	2 cut(s)	41, 812
Cfr10I	RCCGGY	1 cut(s)	701
Cfr13I	GGNCC	5 cut(s)	137, 368, 418, 419, 858
ClaI	ATCGAT	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	587
CspAI	ACCGGT	1 cut(s)	701
CviAII	CATG	7 cut(s)	118, 178, 555, 563, 591, 612, 800
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	2 cut(s)	190, 574
DpnI	GATC	4 cut(s)	156, 470, 535, 649
DpnII	GATC	4 cut(s)	154, 468, 533, 647
EaeI	YGGCCR	2 cut(s)	44, 262
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	590, 718
Eco24I	GRGCYC	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	137, 368
Eco57I	CTGAAG	1 cut(s)	558
EcoNI	CCTNNNNNAGG	1 cut(s)	327
EcoO109I	RGGNCCY	2 cut(s)	418, 419
EcoRII	CCWGG	2 cut(s)	322, 370
EcoT14I	CCWWGG	2 cut(s)	590, 718
EcoT38I	GRGCYC	1 cut(s)	422
ErhI	CCWWGG	2 cut(s)	590, 718
FaeI	CATG	7 cut(s)	121, 181, 558, 566, 594, 615, 803
FatI	CATG	7 cut(s)	117, 177, 554, 562, 590, 611, 799
FauI	CCCGC	2 cut(s)	333, 819
Fnu4HI	GCNGC	5 cut(s)	44, 56, 200, 395, 625
FokI	GGATG	3 cut(s)	48, 194, 624
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	5 cut(s)	44, 56, 200, 395, 625
FspBI	CTAG	4 cut(s)	596, 765, 771, 777
GluI	GCNGC	5 cut(s)	44, 56, 200, 395, 625
GsaI	CCCAGC	2 cut(s)	55, 533
HaeIII	GGCC	4 cut(s)	46, 264, 420, 859
HapII	CCGG	1 cut(s)	702
Hin1II	CATG	7 cut(s)	121, 181, 558, 566, 594, 615, 803
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	3 cut(s)	15, 174, 494
HpaI	GTTAAC	1 cut(s)	207
HpaII	CCGG	1 cut(s)	702
HphI	GGTGA	2 cut(s)	10, 365
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	3 cut(s)	493, 538, 577
Hpy188III	TCNNGA	5 cut(s)	104, 158, 472, 651, 852
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	1 cut(s)	702
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4V	TGCA	8 cut(s)	39, 58, 71, 87, 296, 431, 452, 637
HpyF3I	CTNAG	2 cut(s)	190, 574
Hsp92II	CATG	7 cut(s)	121, 181, 558, 566, 594, 615, 803
KspAI	GTTAAC	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	154, 468, 533, 647
Lsp1109I	GCAGC	3 cut(s)	42, 211, 406
LweI	GCATC	6 cut(s)	26, 58, 172, 439, 490, 646
MaeI	CTAG	4 cut(s)	596, 765, 771, 777
MaeIII	GTNAC	3 cut(s)	29, 334, 788
MalI	GATC	4 cut(s)	156, 470, 535, 649
MboI	GATC	4 cut(s)	154, 468, 533, 647
MboII	GAAGA	5 cut(s)	228, 392, 476, 732, 735
MflI	RGATCY	2 cut(s)	533, 647
MhlI	GDGCHC	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	3 cut(s)	267, 383, 521
MluI	ACGCGT	1 cut(s)	821
MluNI	TGGCCA	1 cut(s)	264
MnlI	CCTC	8 cut(s)	86, 145, 150, 159, 212, 408, 429, 432
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	3 cut(s)	206, 312, 465
MslI	CAYNNNNRTG	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	1 cut(s)	702
MspR9I	CCNGG	2 cut(s)	324, 372
MvaI	CCWGG	2 cut(s)	324, 372
MvnI	CGCG	2 cut(s)	340, 823
NcoI	CCATGG	1 cut(s)	590
NdeII	GATC	4 cut(s)	154, 468, 533, 647
NlaIII	CATG	7 cut(s)	121, 181, 558, 566, 594, 615, 803
NlaIV	GGNNCC	2 cut(s)	419, 420
NspI	RCATGY	1 cut(s)	566
PfeI	GAWTC	3 cut(s)	15, 174, 494
PflMI	CCANNNNNTGG	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	322
PinAI	ACCGGT	1 cut(s)	701
PkrI	GCNGC	5 cut(s)	45, 57, 201, 396, 626
Psp6I	CCWGG	2 cut(s)	322, 370
PspFI	CCCAGC	2 cut(s)	51, 529
PspGI	CCWGG	2 cut(s)	322, 370
PspN4I	GGNNCC	2 cut(s)	419, 420
PspOMI	GGGCCC	1 cut(s)	418
PspPI	GGNCC	5 cut(s)	137, 368, 418, 419, 858
PstI	CTGCAG	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	533, 647
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	206, 312, 465
SatI	GCNGC	5 cut(s)	44, 56, 200, 395, 625
Sau3AI	GATC	4 cut(s)	154, 468, 533, 647
Sau96I	GGNCC	5 cut(s)	137, 368, 418, 419, 858
ScrFI	CCNGG	2 cut(s)	324, 372
SduI	GDGCHC	1 cut(s)	422
SfaNI	GCATC	6 cut(s)	26, 58, 172, 439, 490, 646
SfcI	CTRYAG	1 cut(s)	85
SinI	GGWCC	2 cut(s)	137, 368
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	3 cut(s)	267, 383, 521
SsiI	CCGC	7 cut(s)	9, 43, 340, 625, 751, 797, 812
SspMI	CTAG	4 cut(s)	596, 765, 771, 777
StyD4I	CCNGG	2 cut(s)	322, 370
StyI	CCWWGG	2 cut(s)	590, 718
TaaI	ACNGT	1 cut(s)	788
TaqI	TCGA	2 cut(s)	13, 447
TaqII	GACCGA	1 cut(s)	228
TasI	AATT	3 cut(s)	267, 383, 521
TauI	GCSGC	2 cut(s)	46, 627
TfiI	GAWTC	3 cut(s)	15, 174, 494
Tru1I	TTAA	3 cut(s)	206, 312, 465
Tru9I	TTAA	3 cut(s)	206, 312, 465
TscAI	CASTG	3 cut(s)	29, 94, 129
TseI	GCWGC	3 cut(s)	55, 199, 394
TspDTI	ATGAA	2 cut(s)	166, 816
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	3 cut(s)	29, 94, 129
Van91I	CCANNNNNTGG	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	137, 368
XagI	CCTNNNNNAGG	1 cut(s)	327
XapI	RAATTY	2 cut(s)	267, 521
XceI	RCATGY	1 cut(s)	566
XspI	CTAG	4 cut(s)	596, 765, 771, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.