Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007150

Physical Location & Seq

Genomic Coordinates Reverse (-)

27922054 .. 27924353

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38690.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTCGAGCGGTAGAAACACCCATTGGTGCTACAGATGCAGGCGGCCAACAAGGCTGCAAGGGCGAGATGCAGTTTGCCAAAACTGCAGTGGAGGATTTGTTCAAGAACTTGATGACATGGTTCATATCAGCCCACTAGATTTCTTTGGATCCGACAATGATGAGGACCGTGATAGAAGGTTTGGGTTCATGGAAGCATTCTCAGCTTGGCAGCAGTTGACAGACAGAAGAAGTAGTGATATTATAAGAGGTAGATCAGATTTCGTTCCTGAACATGCCCCGGGGTTTTCTCCATTGTTGATTTTTGGTGGCCAAATTCCTTTCCGCTTGTCTGGCAATGGTGCATTTGAAGCTCTGTTCAATGGATCTCCTGGAATAGGTGTTACACGGGGTAATGTGGGTGATTATTTTGTTGGTCCTGGCTTGGAAGAATTGTTTGAGCAGCTTTCAGCAAATGATAGGAGGGGCCCTCCCCCTGCATCAAGGATTTCAATTGATGCAATGCCAACTATTAAGATCACAAATAAGCATCTTCGTTCCGATTCGCATTGCCCTGTTTGTCAAGACAAATTTGAGCTGGGATCTGAAGCAAGGCAAATGCCATGTAAACATGTATATCACTCAGATTGTATTGTACCATGGCTAGTCCAGCACAACTCATGCCCTGTTTGCCGCCAAGAACTACATCAGCAAGGTTCTGAAAGTGGTCGTAGCTCAAACAGTAGAAGTAGAAGCAGTGGTAATACCAGTGGAAGGGAGAGTGGTAGGGAAAGCCAAGGAAGACGAAATCCTTTTGCTTCTCTGTGGCCATTTCGCGCATCTAGTTCTAGCTCTAGTTCTAACCGTAACCCACCACATGAAAGCAGCCCACCAACTGCTCGTGAAAATAGCAATCAAATGGGTTATTCAGGATGGCCATTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000820 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010498 GO:0010565 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030104 GO:0030163 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042592 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0047484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051603 GO:0061630 GO:0061659 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902005 GO:1902006 GO:2000070 GO:2000214 GO:2000215 GO:2000282 GO:2000283

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

309

Amino Acids

34.29

Weight (kDa)

7.62

Isoelectric Point (pI)

69.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	6 - 37	1.7e-08	zinc-ribbon
zf-rbx1	PF12678	181 - 225	6.4e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	183 - 225	1.1e-13	Ring finger domain
zf-C3HC4_2	PF13923	184 - 224	5.7e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	184 - 211	1.7e-07	RING-like zinc finger
zf-RING_UBOX	PF13445	184 - 222	6.4e-07	RING-type zinc-finger
zf-C3HC4	PF00097	184 - 224	8.8e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40830 AT2G40830 AT2G40830 AT2G40830
fragaria_vesca	FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690
malus_domestica	MD09G1209600.v1.1 MD17G1191600.v1.1
prunus_persica	Prupe.3G067600_v2.0.a1 Prupe.3G067600_v2.0.a1
pyrus_communis	pycom09g12590 pycom17g19850
rosa_chinensis	RchiOBHm_Chr6g0302621
rosa_laevigata	RLG00000011156
rosa_multiflora	Rmu_co8203528.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165510
rosa_rugosa	Rorug06G0315500
rosa_samantha	Rh6AG428800 Rh6BG473700 Rh6CG441100 Rh6DG427800
rosa_wichuraiana	Rw6G037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AccBSI	CCGCTC	1 cut(s)	9
AccII	CGCG	1 cut(s)	816
AciI	CCGC	4 cut(s)	9, 43, 325, 673
AclWI	GGATC	4 cut(s)	144, 157, 373, 589
AcoI	YGGCCR	4 cut(s)	44, 310, 806, 914
AcsI	RAATTY	2 cut(s)	315, 569
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	1 cut(s)	636
AfiI	CCNNNNNNNGG	2 cut(s)	377, 753
AflIII	ACRYGT	1 cut(s)	610
AgsI	TTSAA	4 cut(s)	104, 350, 361, 492
AjnI	CCWGG	2 cut(s)	370, 418
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	6 cut(s)	206, 353, 445, 577, 714, 831
AluI	AGCT	6 cut(s)	206, 353, 445, 577, 714, 831
AlwI	GGATC	4 cut(s)	144, 157, 373, 589
Ama87I	CYCGRG	1 cut(s)	280
AoxI	GGCC	5 cut(s)	44, 310, 466, 806, 914
ApaI	GGGCCC	1 cut(s)	470
ApeKI	GCWGC	4 cut(s)	55, 211, 442, 864
ApoI	RAATTY	2 cut(s)	315, 569
AspLEI	GCGC	1 cut(s)	818
AspS9I	GGNCC	4 cut(s)	166, 416, 466, 467
AsuC2I	CCSGG	2 cut(s)	281, 282
AsuHPI	GGTGA	1 cut(s)	413
AvaI	CYCGRG	1 cut(s)	280
AvaII	GGWCC	2 cut(s)	166, 416
BaeGI	GKGCMC	1 cut(s)	470
BalI	TGGCCA	3 cut(s)	312, 808, 916
BamHI	GGATCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	879
BbsI	GAAGAC	1 cut(s)	787
BbvI	GCAGC	4 cut(s)	42, 223, 454, 876
BccI	CCATC	1 cut(s)	906
BciT130I	CCWGG	2 cut(s)	372, 420
BcnI	CCSGG	2 cut(s)	281, 282
BfaI	CTAG	5 cut(s)	137, 644, 822, 828, 834
BfmI	CTRYAG	2 cut(s)	31, 85
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	6 cut(s)	44, 56, 212, 443, 673, 865
BlsI	GCNGC	6 cut(s)	45, 57, 213, 444, 674, 866
Bme1390I	CCNGG	4 cut(s)	281, 282, 372, 420
Bme18I	GGWCC	2 cut(s)	166, 416
BmeT110I	CYCGRG	1 cut(s)	280
BmgT120I	GGNCC	4 cut(s)	166, 416, 466, 467
BmiI	GGNNCC	3 cut(s)	151, 467, 468
BmrFI	CCNGG	4 cut(s)	281, 282, 372, 420
BmsI	GCATC	6 cut(s)	26, 58, 487, 488, 538, 827
BpiI	GAAGAC	1 cut(s)	787
BplI	GAGNNNNNCTC	2 cut(s)	454, 486
BpuMI	CCSGG	2 cut(s)	281, 282
BsaJI	CCNNGG	5 cut(s)	279, 280, 281, 638, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 753
Bse1I	ACTGG	1 cut(s)	747
Bse3DI	GCAATG	3 cut(s)	343, 507, 547
BseBI	CCWGG	2 cut(s)	372, 420
BseDI	CCNNGG	5 cut(s)	279, 280, 281, 638, 775
BseGI	GGATG	1 cut(s)	917
BseLI	CCNNNNNNNGG	2 cut(s)	377, 753
BseMI	GCAATG	3 cut(s)	343, 507, 547
BseMII	CTCAG	2 cut(s)	216, 636
BseNI	ACTGG	1 cut(s)	747
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	4 cut(s)	42, 223, 454, 876
BseYI	CCCAGC	1 cut(s)	577
Bsh1236I	CGCG	1 cut(s)	816
BshFI	GGCC	5 cut(s)	46, 312, 468, 808, 916
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	377, 753
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	5 cut(s)	46, 312, 468, 808, 916
BsoBI	CYCGRG	1 cut(s)	280
Bsp120I	GGGCCC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp143I	GATC	5 cut(s)	149, 254, 365, 516, 581
Bsp19I	CCATGG	1 cut(s)	638
BspACI	CCGC	4 cut(s)	9, 43, 325, 673
BspANI	GGCC	5 cut(s)	46, 312, 468, 808, 916
BspCNI	CTCAG	2 cut(s)	215, 635
BspFNI	CGCG	1 cut(s)	816
BspLI	GGNNCC	3 cut(s)	151, 467, 468
BspMAI	CTGCAG	1 cut(s)	89
BspPI	GGATC	4 cut(s)	144, 157, 373, 589
BsrBI	CCGCTC	1 cut(s)	9
BsrDI	GCAATG	3 cut(s)	343, 507, 547
BsrI	ACTGG	1 cut(s)	747
BssECI	CCNNGG	5 cut(s)	279, 280, 281, 638, 775
BssMI	GATC	5 cut(s)	149, 254, 365, 516, 581
BssSI	CACGAG	1 cut(s)	879
BssT1I	CCWWGG	2 cut(s)	638, 775
Bst2BI	CACGAG	1 cut(s)	879
Bst2UI	CCWGG	2 cut(s)	372, 420
Bst4CI	ACNGT	3 cut(s)	170, 722, 845
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	2 cut(s)	202, 622
BstDSI	CCRYGG	1 cut(s)	638
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	917
BstFNI	CGCG	1 cut(s)	816
BstHHI	GCGC	1 cut(s)	818
BstKTI	GATC	5 cut(s)	152, 257, 368, 519, 584
BstMBI	GATC	5 cut(s)	149, 254, 365, 516, 581
BstMWI	GCNNNNNNNGC	9 cut(s)	36, 52, 61, 84, 203, 333, 350, 649, 669
BstNI	CCWGG	2 cut(s)	372, 420
BstNSI	RCATGY	2 cut(s)	278, 614
BstSCI	CCNGG	4 cut(s)	279, 280, 370, 418
BstSFI	CTRYAG	2 cut(s)	31, 85
BstSLI	GKGCMC	1 cut(s)	470
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	4 cut(s)	42, 223, 454, 876
BstV2I	GAAGAC	1 cut(s)	787
BstX2I	RGATCY	3 cut(s)	149, 365, 581
BstYI	RGATCY	3 cut(s)	149, 365, 581
BsuRI	GGCC	5 cut(s)	46, 312, 468, 808, 916
BtgI	CCRYGG	1 cut(s)	638
BtsCI	GGATG	1 cut(s)	917
BtsI	GCAGTG	2 cut(s)	94, 742
BtsIMutI	CAGTG	3 cut(s)	94, 742, 754
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	1 cut(s)	818
Cfr13I	GGNCC	4 cut(s)	166, 416, 466, 467
Cfr9I	CCCGGG	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	635
CviAII	CATG	8 cut(s)	118, 190, 275, 603, 611, 639, 660, 857
CviQI	GTAC	1 cut(s)	635
DdeI	CTNAG	2 cut(s)	202, 622
DpnI	GATC	5 cut(s)	151, 256, 367, 518, 583
DpnII	GATC	5 cut(s)	149, 254, 365, 516, 581
EaeI	YGGCCR	4 cut(s)	44, 310, 806, 914
Eco130I	CCWWGG	2 cut(s)	638, 775
Eco24I	GRGCYC	1 cut(s)	470
Eco47I	GGWCC	2 cut(s)	166, 416
Eco57I	CTGAAG	1 cut(s)	606
Eco88I	CYCGRG	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	2 cut(s)	466, 467
EcoRII	CCWGG	2 cut(s)	370, 418
EcoT14I	CCWWGG	2 cut(s)	638, 775
EcoT38I	GRGCYC	1 cut(s)	470
ErhI	CCWWGG	2 cut(s)	638, 775
FaeI	CATG	8 cut(s)	121, 193, 278, 606, 614, 642, 663, 860
FatI	CATG	8 cut(s)	117, 189, 274, 602, 610, 638, 659, 856
Fnu4HI	GCNGC	6 cut(s)	44, 56, 212, 443, 673, 865
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	6 cut(s)	44, 56, 212, 443, 673, 865
FspBI	CTAG	5 cut(s)	137, 644, 822, 828, 834
GlaI	GCGC	1 cut(s)	817
GluI	GCNGC	6 cut(s)	44, 56, 212, 443, 673, 865
GsaI	CCCAGC	1 cut(s)	581
HaeIII	GGCC	5 cut(s)	46, 312, 468, 808, 916
HapII	CCGG	1 cut(s)	281
HhaI	GCGC	1 cut(s)	818
Hin1II	CATG	8 cut(s)	121, 193, 278, 606, 614, 642, 663, 860
Hin6I	GCGC	1 cut(s)	816
HinP1I	GCGC	1 cut(s)	816
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	542
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	2 cut(s)	219, 608
Hpy188I	TCNGA	6 cut(s)	154, 259, 541, 586, 625, 700
Hpy188III	TCNNGA	5 cut(s)	104, 269, 563, 881, 909
Hpy8I	GTNNAC	2 cut(s)	219, 608
HpyAV	CCTTC	2 cut(s)	171, 747
HpyCH4III	ACNGT	3 cut(s)	170, 722, 845
HpyCH4V	TGCA	7 cut(s)	39, 58, 71, 87, 344, 479, 500
HpyF10VI	GCNNNNNNNGC	9 cut(s)	36, 52, 61, 84, 203, 333, 350, 649, 669
HpyF3I	CTNAG	2 cut(s)	202, 622
Hsp92II	CATG	8 cut(s)	121, 193, 278, 606, 614, 642, 663, 860
HspAI	GCGC	1 cut(s)	816
Kzo9I	GATC	5 cut(s)	149, 254, 365, 516, 581
Lsp1109I	GCAGC	4 cut(s)	42, 223, 454, 876
LweI	GCATC	6 cut(s)	26, 58, 487, 488, 538, 827
MaeI	CTAG	5 cut(s)	137, 644, 822, 828, 834
MaeIII	GTNAC	2 cut(s)	382, 845
MalI	GATC	5 cut(s)	151, 256, 367, 518, 583
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	5 cut(s)	149, 254, 365, 516, 581
MboII	GAAGA	4 cut(s)	240, 440, 524, 792
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	3 cut(s)	149, 365, 581
MhlI	GDGCHC	1 cut(s)	470
MlsI	TGGCCA	3 cut(s)	312, 808, 916
MluCI	AATT	4 cut(s)	315, 431, 492, 569
MluNI	TGGCCA	3 cut(s)	312, 808, 916
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	5 cut(s)	86, 157, 242, 456, 480
Mox20I	TGGCCA	3 cut(s)	312, 808, 916
MscI	TGGCCA	3 cut(s)	312, 808, 916
MseI	TTAA	1 cut(s)	513
Msp20I	TGGCCA	3 cut(s)	312, 808, 916
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	4 cut(s)	281, 282, 372, 420
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	2 cut(s)	372, 420
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	9 cut(s)	36, 52, 61, 84, 203, 333, 350, 649, 669
NciI	CCSGG	2 cut(s)	281, 282
NcoI	CCATGG	1 cut(s)	638
NdeII	GATC	5 cut(s)	149, 254, 365, 516, 581
NlaIII	CATG	8 cut(s)	121, 193, 278, 606, 614, 642, 663, 860
NlaIV	GGNNCC	3 cut(s)	151, 467, 468
NspI	RCATGY	2 cut(s)	278, 614
PciI	ACATGT	1 cut(s)	610
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	542
PfoI	TCCNGGA	1 cut(s)	370
PkrI	GCNGC	6 cut(s)	45, 57, 213, 444, 674, 866
PscI	ACATGT	1 cut(s)	610
PsiI	TTATAA	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	370, 418
PspFI	CCCAGC	1 cut(s)	577
PspGI	CCWGG	2 cut(s)	370, 418
PspN4I	GGNNCC	3 cut(s)	151, 467, 468
PspOMI	GGGCCC	1 cut(s)	466
PspPI	GGNCC	4 cut(s)	166, 416, 466, 467
PstI	CTGCAG	1 cut(s)	89
PsuI	RGATCY	3 cut(s)	149, 365, 581
RsaI	GTAC	1 cut(s)	636
RsaNI	GTAC	1 cut(s)	635
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	6 cut(s)	44, 56, 212, 443, 673, 865
Sau3AI	GATC	5 cut(s)	149, 254, 365, 516, 581
Sau96I	GGNCC	4 cut(s)	166, 416, 466, 467
ScrFI	CCNGG	4 cut(s)	281, 282, 372, 420
SduI	GDGCHC	1 cut(s)	470
SfaNI	GCATC	6 cut(s)	26, 58, 487, 488, 538, 827
SfcI	CTRYAG	2 cut(s)	31, 85
SinI	GGWCC	2 cut(s)	166, 416
SmaI	CCCGGG	1 cut(s)	282
Sse9I	AATT	4 cut(s)	315, 431, 492, 569
SsiI	CCGC	4 cut(s)	9, 43, 325, 673
SspMI	CTAG	5 cut(s)	137, 644, 822, 828, 834
StyD4I	CCNGG	4 cut(s)	279, 280, 370, 418
StyI	CCWWGG	2 cut(s)	638, 775
TaaI	ACNGT	3 cut(s)	170, 722, 845
TaqI	TCGA	1 cut(s)	5
TasI	AATT	4 cut(s)	315, 431, 492, 569
TauI	GCSGC	2 cut(s)	46, 675
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	3 cut(s)	94, 742, 754
TseI	GCWGC	4 cut(s)	55, 211, 442, 864
TspDTI	ATGAA	3 cut(s)	113, 178, 873
TspMI	CCCGGG	1 cut(s)	280
TspRI	CASTG	3 cut(s)	94, 742, 754
VpaK11BI	GGWCC	2 cut(s)	166, 416
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	2 cut(s)	315, 569
XceI	RCATGY	2 cut(s)	278, 614
XcmI	CCANNNNNNNNNTGG	1 cut(s)	86
XmaI	CCCGGG	1 cut(s)	280
XspI	CTAG	5 cut(s)	137, 644, 822, 828, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.