Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007150

Physical Location & Seq

Genomic Coordinates Forward (+)

62081800 .. 62084431

Gene Structure 2632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG441100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTCAAGCGGTCGAAACACCCATTGGTGTTACGAATGCAGGCGGCCAACTCAGCTGCAAGGGCGAGATGCAGTTTGCCGAAACTGCAGTGGAGGATTTGTTCAAGAACTTGATGACATGGTTCATATCAGCCCACTGGCTGATGAGGATCGTGATAGGAGGTTTGGATTCATGGATGCTTTCTCAGCTTGGCAGCAGTTAACAGACAGAAGAGGTAGCGAAAATATAAGGGGTAGATCAGATTTAGTTCCTGAACATTCCCCGGCGTTTTCTCCTTTGTTGATTTTTGGTGGCCAAATTCCTGTTCGATTTGGGAATGGTGCATTTGAAGCTCTGTTCAATGGGTCTCCTGGAATAGGTGTAACGCGGGGTAATGTGGGTGATTATTTTGTTGGTCCTGGCTTGGAAGAATTGTTTGAGCAGCTTTCAGCAAATGATAGGAGGGGCCCTCCCCCTGCATCGAGGCTTTCAATCGATGCAATGCCAACTATTAAGATCACGAATAAGCATCTTCGTTCTGATTCGCATTGCCCTGTTTGCCAAGACAAATTTGAGCTGGGATCTGAAGCAAGGCAAATGCCATGTAAGCATGTATATCACTCAGATTGTATTGTACCATGGCTAGTCCAGCACAACTCATGCCCTGTTTGCCGCCAAGAACTGCATCCACAAGGATCTGGAAGTGGTCATAGCTCAAACATTAGAAGTGGTGGTTTTGGTAGTAATACCGGTGGAAGGGAAGGCCAAGGAAGACGAAATCTTTTTTCTTCTCTGTGGCCGTTTCGCTCGTCTAGTTCTAGCTCTAGTTCTAACCGTAACCCACCACATGAAAGCAGCCCGCCAACTACGCGTGAAAATAGCAATCAAATGGGGTATTCAGGATGGCCCTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000820 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010498 GO:0010565 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030104 GO:0030163 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042592 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0047484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051603 GO:0061630 GO:0061659 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902005 GO:1902006 GO:2000070 GO:2000214 GO:2000215 GO:2000282 GO:2000283

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

298

Amino Acids

32.93

Weight (kDa)

7.15

Isoelectric Point (pI)

70.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	6 - 37	7.3e-08	zinc-ribbon
zf-rbx1	PF12678	174 - 218	5.9e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	176 - 218	1.1e-13	Ring finger domain
zf-C3HC4_2	PF13923	177 - 217	5.4e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	177 - 204	1.6e-07	RING-like zinc finger
zf-C3HC4	PF00097	177 - 217	8.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	177 - 208	6.8e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40830 AT2G40830 AT2G40830 AT2G40830
fragaria_vesca	FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690
malus_domestica	MD09G1209600.v1.1 MD17G1191600.v1.1
prunus_persica	Prupe.3G067600_v2.0.a1 Prupe.3G067600_v2.0.a1
pyrus_communis	pycom09g12590 pycom17g19850
rosa_chinensis	RchiOBHm_Chr6g0302621
rosa_laevigata	RLG00000011156
rosa_multiflora	Rmu_co8203528.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165510
rosa_rugosa	Rorug06G0315500
rosa_samantha	Rh6AG428800 Rh6BG473700 Rh6CG441100 Rh6DG427800
rosa_wichuraiana	Rw6G037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	367, 850
AciI	CCGC	5 cut(s)	9, 43, 367, 652, 839
AclWI	GGATC	3 cut(s)	156, 568, 682
AcoI	YGGCCR	3 cut(s)	44, 292, 776
AcsI	RAATTY	2 cut(s)	297, 548
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	1 cut(s)	615
AfiI	CCNNNNNNNGG	2 cut(s)	356, 735
AflIII	ACRYGT	1 cut(s)	848
AgeI	ACCGGT	1 cut(s)	728
AgsI	TTSAA	4 cut(s)	104, 329, 340, 471
AjnI	CCWGG	2 cut(s)	349, 397
AjuI	GAANNNNNNNTTGG	4 cut(s)	7, 39, 288, 320
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	7 cut(s)	55, 188, 332, 424, 556, 693, 801
AluI	AGCT	7 cut(s)	55, 188, 332, 424, 556, 693, 801
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	3 cut(s)	156, 568, 682
AoxI	GGCC	6 cut(s)	44, 292, 445, 742, 776, 884
ApaI	GGGCCC	1 cut(s)	449
ApeKI	GCWGC	4 cut(s)	55, 193, 421, 834
ApoI	RAATTY	2 cut(s)	297, 548
AsiGI	ACCGGT	1 cut(s)	728
AspS9I	GGNCC	4 cut(s)	395, 445, 446, 885
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	449
BalI	TGGCCA	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	757
BbvI	GCAGC	4 cut(s)	42, 205, 433, 846
BccI	CCATC	1 cut(s)	876
BceAI	ACGGC	1 cut(s)	763
BciT130I	CCWGG	2 cut(s)	351, 399
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	4 cut(s)	623, 792, 798, 804
BfmI	CTRYAG	1 cut(s)	85
BisI	GCNGC	6 cut(s)	44, 56, 194, 422, 652, 835
BlsI	GCNGC	6 cut(s)	45, 57, 195, 423, 653, 836
Bme1390I	CCNGG	3 cut(s)	263, 351, 399
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	4 cut(s)	395, 445, 446, 885
BmiI	GGNNCC	2 cut(s)	446, 447
BmrFI	CCNGG	3 cut(s)	263, 351, 399
BmsI	GCATC	6 cut(s)	58, 166, 466, 467, 517, 673
BpiI	GAAGAC	1 cut(s)	757
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
BpuMI	CCSGG	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	261, 617, 745
BsaWI	WCCGGW	1 cut(s)	728
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 735
Bse118I	RCCGGY	1 cut(s)	728
Bse1I	ACTGG	1 cut(s)	141
Bse3DI	GCAATG	2 cut(s)	486, 526
Bse8I	GATNNNNATC	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	351, 399
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	3 cut(s)	261, 617, 745
BseGI	GGATG	3 cut(s)	181, 664, 887
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	356, 735
BseMI	GCAATG	2 cut(s)	486, 526
BseMII	CTCAG	3 cut(s)	65, 198, 615
BseNI	ACTGG	1 cut(s)	141
BseSI	GKGCMC	1 cut(s)	449
BseXI	GCAGC	4 cut(s)	42, 205, 433, 846
BseYI	CCCAGC	1 cut(s)	556
Bsh1236I	CGCG	2 cut(s)	367, 850
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	6 cut(s)	46, 294, 447, 744, 778, 886
BshTI	ACCGGT	1 cut(s)	728
BshVI	ATCGAT	1 cut(s)	474
BsiEI	CGRYCG	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	263, 729
BslI	CCNNNNNNNGG	2 cut(s)	356, 735
BsmAI	GTCTC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	6 cut(s)	46, 294, 447, 744, 778, 886
Bso31I	GGTCTC	1 cut(s)	351
Bsp120I	GGGCCC	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp143I	GATC	5 cut(s)	148, 236, 495, 560, 674
Bsp19I	CCATGG	1 cut(s)	617
BspACI	CCGC	5 cut(s)	9, 43, 367, 652, 839
BspANI	GGCC	6 cut(s)	46, 294, 447, 744, 778, 886
BspCNI	CTCAG	3 cut(s)	64, 197, 614
BspDI	ATCGAT	1 cut(s)	474
BspFNI	CGCG	2 cut(s)	367, 850
BspLI	GGNNCC	2 cut(s)	446, 447
BspMAI	CTGCAG	1 cut(s)	89
BspPI	GGATC	3 cut(s)	156, 568, 682
BspTNI	GGTCTC	1 cut(s)	351
BsrDI	GCAATG	2 cut(s)	486, 526
BsrFI	RCCGGY	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	728
BssECI	CCNNGG	3 cut(s)	261, 617, 745
BssMI	GATC	5 cut(s)	148, 236, 495, 560, 674
BssT1I	CCWWGG	2 cut(s)	617, 745
Bst2UI	CCWGG	2 cut(s)	351, 399
Bst4CI	ACNGT	1 cut(s)	815
Bst6I	CTCTTC	1 cut(s)	205
BstC8I	GCNNGC	2 cut(s)	41, 839
BstDEI	CTNAG	3 cut(s)	51, 184, 601
BstDSI	CCRYGG	1 cut(s)	617
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstF5I	GGATG	3 cut(s)	181, 664, 887
BstFNI	CGCG	2 cut(s)	367, 850
BstKTI	GATC	5 cut(s)	151, 239, 498, 563, 677
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	5 cut(s)	148, 236, 495, 560, 674
BstMCI	CGRYCG	1 cut(s)	13
BstNI	CCWGG	2 cut(s)	351, 399
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	3 cut(s)	261, 349, 397
BstSFI	CTRYAG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	449
BstUI	CGCG	2 cut(s)	367, 850
BstV1I	GCAGC	4 cut(s)	42, 205, 433, 846
BstV2I	GAAGAC	1 cut(s)	757
BstX2I	RGATCY	2 cut(s)	560, 674
BstYI	RGATCY	2 cut(s)	560, 674
Bsu15I	ATCGAT	1 cut(s)	474
BsuRI	GGCC	6 cut(s)	46, 294, 447, 744, 778, 886
BsuTUI	ATCGAT	1 cut(s)	474
BtgI	CCRYGG	1 cut(s)	617
BtsCI	GGATG	3 cut(s)	181, 664, 887
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	94, 134
Cac8I	GCNNGC	2 cut(s)	41, 839
Cfr10I	RCCGGY	1 cut(s)	728
Cfr13I	GGNCC	4 cut(s)	395, 445, 446, 885
ClaI	ATCGAT	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	614
CspAI	ACCGGT	1 cut(s)	728
CviAII	CATG	7 cut(s)	118, 172, 582, 590, 618, 639, 827
CviQI	GTAC	1 cut(s)	614
DdeI	CTNAG	3 cut(s)	51, 184, 601
DpnI	GATC	5 cut(s)	150, 238, 497, 562, 676
DpnII	GATC	5 cut(s)	148, 236, 495, 560, 674
EaeI	YGGCCR	3 cut(s)	44, 292, 776
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	617, 745
Eco24I	GRGCYC	1 cut(s)	449
Eco31I	GGTCTC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	585
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoO109I	RGGNCCY	2 cut(s)	445, 446
EcoRII	CCWGG	2 cut(s)	349, 397
EcoT14I	CCWWGG	2 cut(s)	617, 745
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	2 cut(s)	617, 745
FaeI	CATG	7 cut(s)	121, 175, 585, 593, 621, 642, 830
FatI	CATG	7 cut(s)	117, 171, 581, 589, 617, 638, 826
FauI	CCCGC	2 cut(s)	360, 846
Fnu4HI	GCNGC	6 cut(s)	44, 56, 194, 422, 652, 835
FokI	GGATG	2 cut(s)	188, 651
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	6 cut(s)	44, 56, 194, 422, 652, 835
FspBI	CTAG	4 cut(s)	623, 792, 798, 804
GluI	GCNGC	6 cut(s)	44, 56, 194, 422, 652, 835
GsaI	CCCAGC	1 cut(s)	560
HaeIII	GGCC	6 cut(s)	46, 294, 447, 744, 778, 886
HapII	CCGG	2 cut(s)	263, 729
Hin1II	CATG	7 cut(s)	121, 175, 585, 593, 621, 642, 830
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	2 cut(s)	168, 521
HpaI	GTTAAC	1 cut(s)	201
HpaII	CCGG	2 cut(s)	263, 729
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	4 cut(s)	241, 520, 565, 604
Hpy188III	TCNNGA	6 cut(s)	104, 152, 251, 499, 678, 879
Hpy8I	GTNNAC	1 cut(s)	201
HpyAV	CCTTC	2 cut(s)	729, 734
HpyCH4III	ACNGT	1 cut(s)	815
HpyCH4V	TGCA	8 cut(s)	39, 58, 71, 87, 323, 458, 479, 664
HpyF3I	CTNAG	3 cut(s)	51, 184, 601
Hsp92II	CATG	7 cut(s)	121, 175, 585, 593, 621, 642, 830
KspAI	GTTAAC	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	148, 236, 495, 560, 674
Lsp1109I	GCAGC	4 cut(s)	42, 205, 433, 846
LweI	GCATC	6 cut(s)	58, 166, 466, 467, 517, 673
MaeI	CTAG	4 cut(s)	623, 792, 798, 804
MaeIII	GTNAC	3 cut(s)	29, 361, 815
MalI	GATC	5 cut(s)	150, 238, 497, 562, 676
MboI	GATC	5 cut(s)	148, 236, 495, 560, 674
MboII	GAAGA	5 cut(s)	222, 419, 503, 759, 762
MflI	RGATCY	2 cut(s)	560, 674
MhlI	GDGCHC	1 cut(s)	449
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	3 cut(s)	297, 410, 548
MluI	ACGCGT	1 cut(s)	848
MluNI	TGGCCA	1 cut(s)	294
MnlI	CCTC	7 cut(s)	86, 139, 153, 206, 435, 456, 459
Mox20I	TGGCCA	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	2 cut(s)	200, 492
Msp20I	TGGCCA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	2 cut(s)	263, 729
MspR9I	CCNGG	3 cut(s)	263, 351, 399
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	2 cut(s)	351, 399
MvnI	CGCG	2 cut(s)	367, 850
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	617
NdeII	GATC	5 cut(s)	148, 236, 495, 560, 674
NlaIII	CATG	7 cut(s)	121, 175, 585, 593, 621, 642, 830
NlaIV	GGNNCC	2 cut(s)	446, 447
NspI	RCATGY	1 cut(s)	593
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	168, 521
PfoI	TCCNGGA	1 cut(s)	349
PinAI	ACCGGT	1 cut(s)	728
PkrI	GCNGC	6 cut(s)	45, 57, 195, 423, 653, 836
Psp6I	CCWGG	2 cut(s)	349, 397
PspFI	CCCAGC	1 cut(s)	556
PspGI	CCWGG	2 cut(s)	349, 397
PspN4I	GGNNCC	2 cut(s)	446, 447
PspOMI	GGGCCC	1 cut(s)	445
PspPI	GGNCC	4 cut(s)	395, 445, 446, 885
PstI	CTGCAG	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	560, 674
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	615
RsaNI	GTAC	1 cut(s)	614
SaqAI	TTAA	2 cut(s)	200, 492
SatI	GCNGC	6 cut(s)	44, 56, 194, 422, 652, 835
Sau3AI	GATC	5 cut(s)	148, 236, 495, 560, 674
Sau96I	GGNCC	4 cut(s)	395, 445, 446, 885
ScrFI	CCNGG	3 cut(s)	263, 351, 399
SduI	GDGCHC	1 cut(s)	449
SfaNI	GCATC	6 cut(s)	58, 166, 466, 467, 517, 673
SfcI	CTRYAG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	395
Sse9I	AATT	3 cut(s)	297, 410, 548
SsiI	CCGC	5 cut(s)	9, 43, 367, 652, 839
SspMI	CTAG	4 cut(s)	623, 792, 798, 804
StyD4I	CCNGG	3 cut(s)	261, 349, 397
StyI	CCWWGG	2 cut(s)	617, 745
TaaI	ACNGT	1 cut(s)	815
TaqI	TCGA	4 cut(s)	13, 307, 461, 474
TasI	AATT	3 cut(s)	297, 410, 548
TauI	GCSGC	2 cut(s)	46, 654
TfiI	GAWTC	2 cut(s)	168, 521
Tru1I	TTAA	2 cut(s)	200, 492
Tru9I	TTAA	2 cut(s)	200, 492
TscAI	CASTG	2 cut(s)	94, 141
TseI	GCWGC	4 cut(s)	55, 193, 421, 834
TspDTI	ATGAA	3 cut(s)	113, 160, 843
TspRI	CASTG	2 cut(s)	94, 141
VpaK11BI	GGWCC	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	2 cut(s)	297, 548
XceI	RCATGY	1 cut(s)	593
XspI	CTAG	4 cut(s)	623, 792, 798, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.