Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007150

Physical Location & Seq

Genomic Coordinates Reverse (-)

22816424 .. 22818612

Gene Structure 2189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1191600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCAAGTGGCCGAAACACCCACTGGTGTTACAATTGCAGGCAGCCAGTTCGGCTGAGAGGGCGAGATGCAGTTTGCCCAGGCTGCGATGGAGGATTTGTTCAAGAACTTGATGATATGGTTCATATCAGCCCAATGGATTTCTTTGGACTGGACAATGATGATGATCCTGACAGGAGGTTTGGGATCATGGAAGCTTTCTCAGCGCTGCACCAATTGACAGACAGAAGGCGTAATGATAGCATTAGGGGAAGACCAGATTTAGTTCCAGAGCGTAACCCGGCGTTTGCTCCTCTATTGATTTTTGGTGGCCAAATTCCTTTTCGACTTTCTGGAAACGGTCCTGGCTTAGAAGAACTATTTGAGCAGCTTTCAGCTAATGACCGGCGAGGCCCTGCCCCAGCCTCCAGAGGTTCAATTGATGCAATGCCTACTGTTAAGATCACAAATAGGCATCTCCGTTCTGATGCGCACTGTCCTGTTTGCAAGGACAAATTCGAGCTGGGATCTGAAGCAAAGCAAATGCCTTGTGACCATCTGTACCACACTGATTGTATCGTACCATGGCTAGTCCAACACAACTCATGCCCTGTTTGCCGCCAAGAACTGCCTCCACAAGGTCCGCAAGGAGTGGGAAGCAGTCGTAGCTCAAATAGTCGAAGTAGAAGCAGTAGTTTTGGTAGTAATACCAGTGCAAGGGAGAGTGGTAGAGAAAACCAAGGGAGGCGAAACCTTTTCTCATCTCTGTGGCCGTTTCGCTCATCTAGTTCCAGCTCTAGCTCAAGCACTAGTCATAACCCAACAACTGAAAGTAGCCCATCAACTATGCGGGAACATAATAACGAGATGGGGTATTCAGGATGGCCGTTCGACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000820 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010498 GO:0010565 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030104 GO:0030163 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042592 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0047484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051603 GO:0061630 GO:0061659 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902005 GO:1902006 GO:2000070 GO:2000214 GO:2000215 GO:2000282 GO:2000283

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

293

Amino Acids

32.51

Weight (kDa)

6.79

Isoelectric Point (pI)

76.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	6 - 37	4.7e-11	zinc-ribbon
zf-rbx1	PF12678	156 - 200	1.9e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	158 - 200	1.5e-12	Ring finger domain
zf-C3HC4_2	PF13923	159 - 199	1.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	159 - 199	1.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	159 - 197	2.6e-06	RING-type zinc-finger
zf-RING_11	PF17123	159 - 186	8.2e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40830 AT2G40830 AT2G40830 AT2G40830
fragaria_vesca	FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690
malus_domestica	MD09G1209600.v1.1 MD17G1191600.v1.1
prunus_persica	Prupe.3G067600_v2.0.a1 Prupe.3G067600_v2.0.a1
pyrus_communis	pycom09g12590 pycom17g19850
rosa_chinensis	RchiOBHm_Chr6g0302621
rosa_laevigata	RLG00000011156
rosa_multiflora	Rmu_co8203528.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165510
rosa_rugosa	Rorug06G0315500
rosa_samantha	Rh6AG428800 Rh6BG473700 Rh6CG441100 Rh6DG427800
rosa_wichuraiana	Rw6G037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	471
AciI	CCGC	3 cut(s)	598, 623, 829
AclWI	GGATC	3 cut(s)	161, 194, 514
AcoI	YGGCCR	4 cut(s)	10, 310, 749, 863
AcsI	RAATTY	2 cut(s)	315, 494
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	2 cut(s)	542, 561
AfeI	AGCGCT	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	617, 696
AgsI	TTSAA	2 cut(s)	104, 417
AhlI	ACTAGT	1 cut(s)	788
AjnI	CCWGG	2 cut(s)	79, 343
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	7 cut(s)	197, 370, 377, 502, 648, 774, 780
AluI	AGCT	7 cut(s)	197, 370, 377, 502, 648, 774, 780
AlwI	GGATC	3 cut(s)	161, 194, 514
Aor51HI	AGCGCT	1 cut(s)	207
AoxI	GGCC	5 cut(s)	10, 310, 391, 749, 863
ApeKI	GCWGC	4 cut(s)	43, 84, 208, 367
ApoI	RAATTY	2 cut(s)	315, 494
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspLEI	GCGC	2 cut(s)	208, 472
AspS9I	GGNCC	3 cut(s)	341, 392, 620
AsuC2I	CCSGG	1 cut(s)	281
AvaII	GGWCC	2 cut(s)	341, 620
BalI	TGGCCA	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	259
BbvI	GCAGC	4 cut(s)	55, 71, 195, 379
BccI	CCATC	5 cut(s)	83, 543, 826, 841, 855
BceAI	ACGGC	2 cut(s)	736, 850
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	2 cut(s)	81, 345
BcnI	CCSGG	1 cut(s)	281
BcuI	ACTAGT	1 cut(s)	788
BfaI	CTAG	5 cut(s)	569, 765, 777, 789, 877
BfoI	RGCGCY	1 cut(s)	209
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	5 cut(s)	44, 85, 209, 368, 598
BlsI	GCNGC	5 cut(s)	45, 86, 210, 369, 599
Bme1390I	CCNGG	3 cut(s)	81, 281, 345
Bme18I	GGWCC	2 cut(s)	341, 620
BmgT120I	GGNCC	3 cut(s)	341, 392, 620
BmrFI	CCNGG	3 cut(s)	81, 281, 345
BmsI	GCATC	4 cut(s)	58, 412, 457, 463
BpiI	GAAGAC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	391
BpuEI	CTTGAG	1 cut(s)	766
BpuMI	CCSGG	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	79, 563, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 696
Bse118I	RCCGGY	1 cut(s)	384
Bse1I	ACTGG	4 cut(s)	29, 47, 156, 690
Bse3DI	GCAATG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	2 cut(s)	81, 345
BseDI	CCNNGG	3 cut(s)	79, 563, 718
BseGI	GGATG	1 cut(s)	866
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	617, 696
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	47, 216
BseNI	ACTGG	4 cut(s)	29, 47, 156, 690
BseRI	GAGGAG	1 cut(s)	282
BseXI	GCAGC	4 cut(s)	55, 71, 195, 379
BseYI	CCCAGC	2 cut(s)	400, 502
BsgI	GTGCAG	1 cut(s)	194
BshFI	GGCC	5 cut(s)	12, 312, 393, 751, 865
BsiSI	CCGG	2 cut(s)	281, 385
BslI	CCNNNNNNNGG	2 cut(s)	617, 696
BsnI	GGCC	5 cut(s)	12, 312, 393, 751, 865
Bsp143I	GATC	4 cut(s)	166, 186, 441, 506
Bsp19I	CCATGG	1 cut(s)	563
BspACI	CCGC	3 cut(s)	598, 623, 829
BspANI	GGCC	5 cut(s)	12, 312, 393, 751, 865
BspCNI	CTCAG	2 cut(s)	48, 215
BspPI	GGATC	3 cut(s)	161, 194, 514
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	384
BsrI	ACTGG	4 cut(s)	29, 47, 156, 690
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	3 cut(s)	79, 563, 718
BssMI	GATC	4 cut(s)	166, 186, 441, 506
BssT1I	CCWWGG	2 cut(s)	563, 718
Bst2UI	CCWGG	2 cut(s)	81, 345
Bst4CI	ACNGT	3 cut(s)	341, 436, 476
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	3 cut(s)	56, 202, 349
BstDSI	CCRYGG	1 cut(s)	563
BstENI	CCTNNNNNAGG	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	866
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	2 cut(s)	208, 472
BstKTI	GATC	4 cut(s)	169, 189, 444, 509
BstMBI	GATC	4 cut(s)	166, 186, 441, 506
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 61, 84, 203, 594, 645
BstNI	CCWGG	2 cut(s)	81, 345
BstSCI	CCNGG	3 cut(s)	79, 279, 343
BstV1I	GCAGC	4 cut(s)	55, 71, 195, 379
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BsuRI	GGCC	5 cut(s)	12, 312, 393, 751, 865
BtgI	CCRYGG	1 cut(s)	563
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	866
BtsIMutI	CAGTG	4 cut(s)	22, 472, 546, 697
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	2 cut(s)	208, 472
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	3 cut(s)	341, 392, 620
Csp6I	GTAC	2 cut(s)	541, 560
CspCI	CAANNNNNGTGG	2 cut(s)	533, 568
CviAII	CATG	3 cut(s)	190, 564, 585
CviQI	GTAC	2 cut(s)	541, 560
DdeI	CTNAG	3 cut(s)	56, 202, 349
DpnI	GATC	4 cut(s)	168, 188, 443, 508
DpnII	GATC	4 cut(s)	166, 186, 441, 506
EaeI	YGGCCR	4 cut(s)	10, 310, 749, 863
Eco130I	CCWWGG	2 cut(s)	563, 718
Eco47I	GGWCC	2 cut(s)	341, 620
Eco47III	AGCGCT	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	531
EcoNI	CCTNNNNNAGG	1 cut(s)	615
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRII	CCWGG	2 cut(s)	79, 343
EcoT14I	CCWWGG	2 cut(s)	563, 718
ErhI	CCWWGG	2 cut(s)	563, 718
FaeI	CATG	3 cut(s)	193, 567, 588
FaiI	YATR	8 cut(s)	119, 126, 191, 565, 586, 795, 827, 837
FatI	CATG	3 cut(s)	189, 563, 584
FauI	CCCGC	1 cut(s)	822
Fnu4HI	GCNGC	5 cut(s)	44, 85, 209, 368, 598
FokI	GGATG	1 cut(s)	873
Fsp4HI	GCNGC	5 cut(s)	44, 85, 209, 368, 598
FspAI	RTGCGCAY	1 cut(s)	471
FspBI	CTAG	5 cut(s)	569, 765, 777, 789, 877
FspI	TGCGCA	1 cut(s)	471
GlaI	GCGC	2 cut(s)	207, 471
GluI	GCNGC	5 cut(s)	44, 85, 209, 368, 598
GsaI	CCCAGC	2 cut(s)	404, 506
GsuI	CTGGAG	1 cut(s)	391
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	5 cut(s)	12, 312, 393, 751, 865
HapII	CCGG	2 cut(s)	281, 385
HhaI	GCGC	2 cut(s)	208, 472
Hin1II	CATG	3 cut(s)	193, 567, 588
Hin6I	GCGC	2 cut(s)	206, 470
HinP1I	GCGC	2 cut(s)	206, 470
HindIII	AAGCTT	1 cut(s)	195
HpaII	CCGG	2 cut(s)	281, 385
Hpy188I	TCNGA	2 cut(s)	466, 511
Hpy188III	TCNNGA	6 cut(s)	104, 170, 269, 333, 408, 858
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	3 cut(s)	341, 436, 476
HpyCH4V	TGCA	6 cut(s)	39, 71, 211, 425, 486, 695
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 61, 84, 203, 594, 645
HpyF3I	CTNAG	3 cut(s)	56, 202, 349
Hsp92II	CATG	3 cut(s)	193, 567, 588
HspAI	GCGC	2 cut(s)	206, 470
Kzo9I	GATC	4 cut(s)	166, 186, 441, 506
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	4 cut(s)	55, 71, 195, 379
LweI	GCATC	4 cut(s)	58, 412, 457, 463
MaeI	CTAG	5 cut(s)	569, 765, 777, 789, 877
MaeIII	GTNAC	3 cut(s)	29, 275, 530
MalI	GATC	4 cut(s)	168, 188, 443, 508
MboI	GATC	4 cut(s)	166, 186, 441, 506
MboII	GAAGA	2 cut(s)	264, 365
MfeI	CAATTG	3 cut(s)	34, 215, 417
MflI	RGATCY	1 cut(s)	506
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	5 cut(s)	34, 215, 315, 417, 494
MluNI	TGGCCA	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	598
MnlI	CCTC	9 cut(s)	53, 86, 171, 303, 383, 404, 415, 621, 717
Mox20I	TGGCCA	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	745
Msp20I	TGGCCA	1 cut(s)	312
MspI	CCGG	2 cut(s)	281, 385
MspR9I	CCNGG	3 cut(s)	81, 281, 345
MunI	CAATTG	3 cut(s)	34, 215, 417
MvaI	CCWGG	2 cut(s)	81, 345
MwoI	GCNNNNNNNGC	6 cut(s)	52, 61, 84, 203, 594, 645
NciI	CCSGG	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	563
NdeII	GATC	4 cut(s)	166, 186, 441, 506
NlaIII	CATG	3 cut(s)	193, 567, 588
NmuCI	GTSAC	1 cut(s)	530
NsbI	TGCGCA	1 cut(s)	471
PkrI	GCNGC	5 cut(s)	45, 86, 210, 369, 599
Psp6I	CCWGG	2 cut(s)	79, 343
PspFI	CCCAGC	2 cut(s)	400, 502
PspGI	CCWGG	2 cut(s)	79, 343
PspPI	GGNCC	3 cut(s)	341, 392, 620
PsuI	RGATCY	1 cut(s)	506
RsaI	GTAC	2 cut(s)	542, 561
RsaNI	GTAC	2 cut(s)	541, 560
RseI	CAYNNNNRTG	1 cut(s)	745
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	5 cut(s)	44, 85, 209, 368, 598
Sau3AI	GATC	4 cut(s)	166, 186, 441, 506
Sau96I	GGNCC	3 cut(s)	341, 392, 620
ScrFI	CCNGG	3 cut(s)	81, 281, 345
SfaNI	GCATC	4 cut(s)	58, 412, 457, 463
SinI	GGWCC	2 cut(s)	341, 620
SmiMI	CAYNNNNRTG	1 cut(s)	745
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
SpeI	ACTAGT	1 cut(s)	788
Sse9I	AATT	5 cut(s)	34, 215, 315, 417, 494
SsiI	CCGC	3 cut(s)	598, 623, 829
SspMI	CTAG	5 cut(s)	569, 765, 777, 789, 877
StyD4I	CCNGG	3 cut(s)	79, 279, 343
StyI	CCWWGG	2 cut(s)	563, 718
TaaI	ACNGT	3 cut(s)	341, 436, 476
TaqI	TCGA	4 cut(s)	325, 498, 658, 870
TasI	AATT	5 cut(s)	34, 215, 315, 417, 494
TauI	GCSGC	1 cut(s)	600
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	4 cut(s)	29, 479, 553, 697
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	4 cut(s)	43, 84, 208, 367
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	4 cut(s)	29, 479, 553, 697
VpaK11BI	GGWCC	2 cut(s)	341, 620
XagI	CCTNNNNNAGG	1 cut(s)	615
XapI	RAATTY	2 cut(s)	315, 494
XspI	CTAG	5 cut(s)	569, 765, 777, 789, 877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.