Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007150

Physical Location & Seq

Genomic Coordinates Reverse (-)

20200314 .. 20202564

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1209600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCTTAATATATTGAGGAGTTCAGGGACGAGACTTGTTTGTACCCATAAATTTCTAAAAGAGGAGAGGATGTCAGGTGGCCGAAACACCCACTGGTGTTACGATTGCAGGCGCCCATTTCGGCTGAGAGGGCGAGACGCGGTTTGCCCAGGCTGCGATGGAGGATTTGTTCAAGAACTTGATGATATGGTTCATGTCAGCCCAATGGATTTCTTTGAACTGCACAATGATGATGATCGTGATAGGAGGTTCTTGGAAGCTTTCTCAGTGTTGCACCAATTGACAGACAGAAGGCGTAATGGTAGCATTAGGGCAAGATCAGATTTAGTTCCTGAGCGCAACCCGGCATTTGCTCATCTCTTGATTTTTGGTGGCCAAATACCTTTTCGACTGTCTGGGAACGGTGCTTTTGAAGCTCTTTTCAATGGGTCTCCTGGAATAGGCGTGACACGGGGTAACATGGGTGATTATTTTGTAGGTCCTGGCTTAGAAGAACTATTTGAGCAGCTTTCAGCTAATGACCGGCGAGGCCCTGCCCCAGCCTCCAGAGGTTCAATTGATGCAATGCCTACTGTTAAGATCACAAACAGGCATCTCCGTTCTGATGCGCACTGCCCTGTTTGCAAGGACAAATTCGAGTTGGGATCTGAAGCAAGGCAAATGCCTTGTGACCATCTATACCACACAGATTGTATTGTACCATGGTTAGTACAACACAACTCATGCCCTGTTTGCCGTCAAGAACTCCCTCCGCAAGGTTCACCAAGAGCAGGAAGCGGTCATAGCACAAGTAGTCGAAGTAGAAGCAGTAGTTTTGGTAGTAACACCAGTGCAAGGGAGAGTGGTAGAGAAAACCAAGGAAGGCGAAATCCTCTCTCTTATTTGTGGCCATTTCGCTCATCTAGTTCTAGCTCCAGCTCCAGCTCTAGCCATAACCCAACTGAAAGTAGTTCATCAACTATGCGCGAACACAATAATCAGATGGGGTATTCAGGATGGCCGTTTGACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000820 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010498 GO:0010565 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030104 GO:0030163 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042592 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0047484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051603 GO:0061630 GO:0061659 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902005 GO:1902006 GO:2000070 GO:2000214 GO:2000215 GO:2000282 GO:2000283

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

338

Amino Acids

37.69

Weight (kDa)

8.51

Isoelectric Point (pI)

71.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	29 - 60	4.8e-10	zinc-ribbon
zf-rbx1	PF12678	202 - 246	3.1e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	204 - 246	1.3e-12	Ring finger domain
zf-C3HC4_2	PF13923	205 - 245	2.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	205 - 232	2.1e-06	RING-like zinc finger
zf-C3HC4	PF00097	205 - 245	2.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40830 AT2G40830 AT2G40830 AT2G40830
fragaria_vesca	FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690
malus_domestica	MD09G1209600.v1.1 MD17G1191600.v1.1
prunus_persica	Prupe.3G067600_v2.0.a1 Prupe.3G067600_v2.0.a1
pyrus_communis	pycom09g12590 pycom17g19850
rosa_chinensis	RchiOBHm_Chr6g0302621
rosa_laevigata	RLG00000011156
rosa_multiflora	Rmu_co8203528.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165510
rosa_rugosa	Rorug06G0315500
rosa_samantha	Rh6AG428800 Rh6BG473700 Rh6CG441100 Rh6DG427800
rosa_wichuraiana	Rw6G037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	609
AccB1I	GGYRCC	1 cut(s)	111
AccII	CGCG	2 cut(s)	140, 966
AciI	CCGC	3 cut(s)	140, 752, 777
AclWI	GGATC	1 cut(s)	652
AcoI	YGGCCR	4 cut(s)	79, 373, 887, 998
AcsI	RAATTY	2 cut(s)	50, 632
AcuI	CTGAAG	1 cut(s)	669
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	3 cut(s)	43, 699, 711
AfiI	CCNNNNNNNGG	4 cut(s)	440, 755, 770, 834
AgsI	TTSAA	5 cut(s)	173, 218, 413, 424, 555
AjnI	CCWGG	3 cut(s)	148, 433, 481
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AloI	GAACNNNNNNTCC	2 cut(s)	153, 185
AluBI	AGCT	7 cut(s)	260, 416, 508, 515, 912, 918, 924
AluI	AGCT	7 cut(s)	260, 416, 508, 515, 912, 918, 924
Alw26I	GTCTC	3 cut(s)	25, 129, 435
AlwI	GGATC	1 cut(s)	652
AoxI	GGCC	5 cut(s)	79, 373, 529, 887, 998
ApeKI	GCWGC	2 cut(s)	153, 505
ApoI	RAATTY	2 cut(s)	50, 632
AspLEI	GCGC	4 cut(s)	114, 339, 610, 966
AspS9I	GGNCC	2 cut(s)	479, 530
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	476, 753
AvaII	GGWCC	1 cut(s)	479
BalI	TGGCCA	2 cut(s)	375, 889
BanI	GGYRCC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	140, 517
BccI	CCATC	4 cut(s)	152, 681, 976, 990
BceAI	ACGGC	2 cut(s)	720, 985
BciT130I	CCWGG	3 cut(s)	150, 435, 483
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	3 cut(s)	25, 129, 435
BfaI	CTAG	4 cut(s)	903, 909, 927, 1012
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	2 cut(s)	154, 506
BlsI	GCNGC	2 cut(s)	155, 507
Bme1390I	CCNGG	4 cut(s)	150, 344, 435, 483
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	2 cut(s)	479, 530
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	4 cut(s)	150, 344, 435, 483
BmsI	GCATC	3 cut(s)	550, 595, 601
BpmI	CTGGAG	3 cut(s)	529, 898, 904
Bpu10I	CCTNAGC	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	148, 701, 856
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 153, 183
Bsc4I	CCNNNNNNNGG	4 cut(s)	440, 755, 770, 834
Bse118I	RCCGGY	1 cut(s)	522
Bse1I	ACTGG	2 cut(s)	98, 828
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	3 cut(s)	150, 435, 483
BseDI	CCNNGG	3 cut(s)	148, 701, 856
BseGI	GGATG	2 cut(s)	75, 1001
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	4 cut(s)	440, 755, 770, 834
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	3 cut(s)	116, 279, 324
BseNI	ACTGG	2 cut(s)	98, 828
BseRI	GAGGAG	2 cut(s)	31, 77
BseXI	GCAGC	2 cut(s)	140, 517
BseYI	CCCAGC	1 cut(s)	538
BsgI	GTGCAG	1 cut(s)	206
Bsh1236I	CGCG	2 cut(s)	140, 966
BshFI	GGCC	5 cut(s)	81, 375, 531, 889, 1000
BshNI	GGYRCC	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	344, 523
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	4 cut(s)	440, 755, 770, 834
BsmAI	GTCTC	3 cut(s)	25, 129, 435
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	5 cut(s)	81, 375, 531, 889, 1000
Bso31I	GGTCTC	1 cut(s)	435
Bsp143I	GATC	4 cut(s)	235, 317, 579, 644
Bsp19I	CCATGG	1 cut(s)	701
BspACI	CCGC	3 cut(s)	140, 752, 777
BspANI	GGCC	5 cut(s)	81, 375, 531, 889, 1000
BspCNI	CTCAG	3 cut(s)	117, 278, 325
BspFNI	CGCG	2 cut(s)	140, 966
BspLI	GGNNCC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	652
BspT107I	GGYRCC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	570
BsrFI	RCCGGY	1 cut(s)	522
BsrI	ACTGG	2 cut(s)	98, 828
BssAI	RCCGGY	1 cut(s)	522
BssECI	CCNNGG	3 cut(s)	148, 701, 856
BssMI	GATC	4 cut(s)	235, 317, 579, 644
BssNI	GRCGYC	1 cut(s)	112
BssT1I	CCWWGG	2 cut(s)	701, 856
Bst2UI	CCWGG	3 cut(s)	150, 435, 483
Bst4CI	ACNGT	3 cut(s)	393, 404, 574
BstACI	GRCGYC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	4 cut(s)	125, 265, 333, 487
BstDSI	CCRYGG	1 cut(s)	701
BstENI	CCTNNNNNAGG	2 cut(s)	438, 753
BstF5I	GGATG	2 cut(s)	75, 1001
BstFNI	CGCG	2 cut(s)	140, 966
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	4 cut(s)	114, 339, 610, 966
BstKTI	GATC	4 cut(s)	238, 320, 582, 647
BstMAI	GTCTC	3 cut(s)	25, 129, 435
BstMBI	GATC	4 cut(s)	235, 317, 579, 644
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 153, 413, 621, 732, 783
BstNI	CCWGG	3 cut(s)	150, 435, 483
BstSCI	CCNGG	4 cut(s)	148, 342, 433, 481
BstUI	CGCG	2 cut(s)	140, 966
BstV1I	GCAGC	2 cut(s)	140, 517
BstX2I	RGATCY	1 cut(s)	644
BstYI	RGATCY	1 cut(s)	644
BsuRI	GGCC	5 cut(s)	81, 375, 531, 889, 1000
BtgI	CCRYGG	1 cut(s)	701
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	75, 1001
BtsI	GCAGTG	1 cut(s)	610
BtsIMutI	CAGTG	4 cut(s)	91, 273, 610, 835
Cac8I	GCNNGC	1 cut(s)	110
CfoI	GCGC	4 cut(s)	114, 339, 610, 966
Cfr10I	RCCGGY	1 cut(s)	522
Cfr13I	GGNCC	2 cut(s)	479, 530
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	42, 698, 710
CspCI	CAANNNNNGTGG	2 cut(s)	671, 706
CviAII	CATG	4 cut(s)	194, 460, 702, 723
CviQI	GTAC	3 cut(s)	42, 698, 710
DdeI	CTNAG	4 cut(s)	125, 265, 333, 487
DinI	GGCGCC	1 cut(s)	113
DpnI	GATC	4 cut(s)	237, 319, 581, 646
DpnII	GATC	4 cut(s)	235, 317, 579, 644
EaeI	YGGCCR	4 cut(s)	79, 373, 887, 998
Eco130I	CCWWGG	2 cut(s)	701, 856
Eco31I	GGTCTC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	669
EcoNI	CCTNNNNNAGG	2 cut(s)	438, 753
EcoO109I	RGGNCCY	2 cut(s)	479, 530
EcoRII	CCWGG	3 cut(s)	148, 433, 481
EcoT14I	CCWWGG	2 cut(s)	701, 856
EgeI	GGCGCC	1 cut(s)	113
EheI	GGCGCC	1 cut(s)	113
ErhI	CCWWGG	2 cut(s)	701, 856
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	4 cut(s)	197, 463, 705, 726
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	4 cut(s)	193, 459, 701, 722
Fnu4HI	GCNGC	2 cut(s)	154, 506
FokI	GGATG	2 cut(s)	82, 1008
Fsp4HI	GCNGC	2 cut(s)	154, 506
FspAI	RTGCGCAY	1 cut(s)	609
FspBI	CTAG	4 cut(s)	903, 909, 927, 1012
FspI	TGCGCA	1 cut(s)	609
GlaI	GCGC	4 cut(s)	113, 338, 609, 965
GluI	GCNGC	2 cut(s)	154, 506
GsaI	CCCAGC	1 cut(s)	542
GsuI	CTGGAG	3 cut(s)	529, 898, 904
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	5 cut(s)	81, 375, 531, 889, 1000
HapII	CCGG	2 cut(s)	344, 523
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	4 cut(s)	114, 339, 610, 966
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	4 cut(s)	197, 463, 705, 726
Hin6I	GCGC	4 cut(s)	112, 337, 608, 964
HinP1I	GCGC	4 cut(s)	112, 337, 608, 964
HindIII	AAGCTT	1 cut(s)	258
HpaII	CCGG	2 cut(s)	344, 523
HphI	GGTGA	2 cut(s)	476, 753
Hpy166II	GTNNAC	1 cut(s)	761
Hpy188I	TCNGA	4 cut(s)	322, 604, 649, 981
Hpy188III	TCNNGA	7 cut(s)	173, 239, 332, 361, 546, 740, 993
Hpy8I	GTNNAC	1 cut(s)	761
HpyAV	CCTTC	2 cut(s)	285, 855
HpyCH4III	ACNGT	3 cut(s)	393, 404, 574
HpyCH4V	TGCA	6 cut(s)	108, 223, 274, 563, 624, 833
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 153, 413, 621, 732, 783
HpyF3I	CTNAG	4 cut(s)	125, 265, 333, 487
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	4 cut(s)	197, 463, 705, 726
HspAI	GCGC	4 cut(s)	112, 337, 608, 964
KasI	GGCGCC	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	235, 317, 579, 644
LmnI	GCTCC	2 cut(s)	917, 923
Lsp1109I	GCAGC	2 cut(s)	140, 517
LweI	GCATC	3 cut(s)	550, 595, 601
MaeI	CTAG	4 cut(s)	903, 909, 927, 1012
MaeIII	GTNAC	5 cut(s)	98, 445, 455, 668, 821
MalI	GATC	4 cut(s)	237, 319, 581, 646
MboI	GATC	4 cut(s)	235, 317, 579, 644
MboII	GAAGA	1 cut(s)	503
MfeI	CAATTG	2 cut(s)	278, 555
MflI	RGATCY	1 cut(s)	644
MlsI	TGGCCA	2 cut(s)	375, 889
MluCI	AATT	4 cut(s)	50, 278, 555, 632
MluNI	TGGCCA	2 cut(s)	375, 889
Mly113I	GGCGCC	1 cut(s)	112
Mox20I	TGGCCA	2 cut(s)	375, 889
MscI	TGGCCA	2 cut(s)	375, 889
MseI	TTAA	2 cut(s)	6, 576
MslI	CAYNNNNRTG	1 cut(s)	228
Msp20I	TGGCCA	2 cut(s)	375, 889
MspI	CCGG	2 cut(s)	344, 523
MspR9I	CCNGG	4 cut(s)	150, 344, 435, 483
MunI	CAATTG	2 cut(s)	278, 555
MvaI	CCWGG	3 cut(s)	150, 435, 483
MvnI	CGCG	2 cut(s)	140, 966
MwoI	GCNNNNNNNGC	6 cut(s)	130, 153, 413, 621, 732, 783
NarI	GGCGCC	1 cut(s)	112
NciI	CCSGG	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	701
NdeII	GATC	4 cut(s)	235, 317, 579, 644
NlaIII	CATG	4 cut(s)	197, 463, 705, 726
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	2 cut(s)	445, 668
NsbI	TGCGCA	1 cut(s)	609
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	2 cut(s)	155, 507
PluTI	GGCGCC	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	479
Psp6I	CCWGG	3 cut(s)	148, 433, 481
PspFI	CCCAGC	1 cut(s)	538
PspGI	CCWGG	3 cut(s)	148, 433, 481
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	479, 530
PspPPI	RGGWCCY	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	644
RsaI	GTAC	3 cut(s)	43, 699, 711
RsaNI	GTAC	3 cut(s)	42, 698, 710
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	6, 576
SatI	GCNGC	2 cut(s)	154, 506
Sau3AI	GATC	4 cut(s)	235, 317, 579, 644
Sau96I	GGNCC	2 cut(s)	479, 530
ScrFI	CCNGG	4 cut(s)	150, 344, 435, 483
SfaNI	GCATC	3 cut(s)	550, 595, 601
SfoI	GGCGCC	1 cut(s)	113
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	4 cut(s)	50, 278, 555, 632
SsiI	CCGC	3 cut(s)	140, 752, 777
SspDI	GGCGCC	1 cut(s)	111
SspMI	CTAG	4 cut(s)	903, 909, 927, 1012
StyD4I	CCNGG	4 cut(s)	148, 342, 433, 481
StyI	CCWWGG	2 cut(s)	701, 856
TaaI	ACNGT	3 cut(s)	393, 404, 574
TaqI	TCGA	3 cut(s)	388, 636, 796
TasI	AATT	4 cut(s)	50, 278, 555, 632
TatI	WGTACW	1 cut(s)	709
Tru1I	TTAA	2 cut(s)	6, 576
Tru9I	TTAA	2 cut(s)	6, 576
TscAI	CASTG	4 cut(s)	98, 273, 617, 835
TseFI	GTSAC	2 cut(s)	445, 668
TseI	GCWGC	2 cut(s)	153, 505
Tsp45I	GTSAC	2 cut(s)	445, 668
TspDTI	ATGAA	2 cut(s)	182, 942
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	4 cut(s)	98, 273, 617, 835
VpaK11BI	GGWCC	1 cut(s)	479
XagI	CCTNNNNNAGG	2 cut(s)	438, 753
XapI	RAATTY	2 cut(s)	50, 632
XspI	CTAG	4 cut(s)	903, 909, 927, 1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.