Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007150

Physical Location & Seq

Genomic Coordinates Reverse (-)

11167554 .. 11168507

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCAGGTGGCCGAAACACCCACTGGTGTTACAATTGCAGGCACCCATTTCGGATGAGAGGGCGAGACGCAGTTTGCCCAGGCTGCGATGGAGGATTTATTCAAGAACTTGATGATATGGTTCATGTCAGCCCAATGGATTTCTTTGGACTGGACAATGATGATGATCGTGACAGGAGGTTCTTGGAAGCTTTCTCAGTGTTGCACCAATTGACAGACAGAAGGCGTACTGATAGCATTAGGGCAAGATCAGATTTAGTTCCTGAGCGCAACCCGGCATTTGCTCCTCTCTTGATTTTTGGTGGCCAAATTCCTTTTCGATTGTCTGGGAACGGCAATTTTGAAGCTCTTTTCAATGGGTCTCCTGGAATAGGCGTGACACGAGGTAACGTGCGTGATTATTTTGTAGGTCCTGGCTTAGAAGAACTATTTGAGCAGCTTTCAGCTAATGACCGGCAAGGCCCTGCCCCAGCCTCCAGAGGTTCAATTGATGCAATGCCTACTGTTAAGATCACAAACAGGCATCTCCGTTCTGATGCGCACTGCCCTGTTTGCAAGGACAAATTCGAGTTGGGATCTGAAGCAAGGCAAATGCCTTGTGACCATCTATACCACACAGATTGTATTGTACCATGGTTAGTACAACACAACTCATGCCCTGTTTGCCGTCAAGAACTCCCTCCACAAGGTTCACCAGGAGCAGGAAGTGGTCATACCACAAGTAGTCGAAGTAGAAGCAGTAGTTTTGGTAGTAACACCAGTGCAAGGGAGAGTGGTAGAGAAACCCAAGGAAGGCGAAATCCTCTCTCTTATTTGTGGCCGTTTCGCTCATCTAGTTCTAGCTCCAGCTCCAGCTCCAGCTCTAGCCATGACCCGACAACTGAAAGTAGTTCATCAACTATGCGCGAACACAATAATCAGATGGGGTATTCAGGATGGCCGTTCGACGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000820 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010498 GO:0010565 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030104 GO:0030163 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042592 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0047484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051603 GO:0061630 GO:0061659 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902005 GO:1902006 GO:2000070 GO:2000214 GO:2000215 GO:2000282 GO:2000283

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

318

Amino Acids

35.09

Weight (kDa)

6.63

Isoelectric Point (pI)

64.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	6 - 37	2.2e-08	zinc-ribbon
zf-rbx1	PF12678	179 - 223	3.1e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	181 - 223	1.2e-12	Ring finger domain
zf-C3HC4_2	PF13923	182 - 222	2.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	182 - 222	1.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	182 - 209	1.9e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40830 AT2G40830 AT2G40830 AT2G40830
fragaria_vesca	FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690
malus_domestica	MD09G1209600.v1.1 MD17G1191600.v1.1
prunus_persica	Prupe.3G067600_v2.0.a1 Prupe.3G067600_v2.0.a1
pyrus_communis	pycom09g12590 pycom17g19850
rosa_chinensis	RchiOBHm_Chr6g0302621
rosa_laevigata	RLG00000011156
rosa_multiflora	Rmu_co8203528.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165510
rosa_rugosa	Rorug06G0315500
rosa_samantha	Rh6AG428800 Rh6BG473700 Rh6CG441100 Rh6DG427800
rosa_wichuraiana	Rw6G037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	951
Acc16I	TGCGCA	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	42
AccII	CGCG	1 cut(s)	906
AclWI	GGATC	1 cut(s)	583
AcoI	YGGCCR	4 cut(s)	10, 304, 818, 938
AcsI	RAATTY	2 cut(s)	309, 563
AcuI	CTGAAG	1 cut(s)	600
AcyI	GRCGYC	1 cut(s)	948
AfaI	GTAC	3 cut(s)	229, 630, 642
AfiI	CCNNNNNNNGG	5 cut(s)	371, 686, 701, 765, 792
AgsI	TTSAA	4 cut(s)	104, 344, 355, 486
AjnI	CCWGG	4 cut(s)	79, 364, 412, 694
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AluBI	AGCT	8 cut(s)	191, 347, 439, 446, 843, 849, 855, 861
AluI	AGCT	8 cut(s)	191, 347, 439, 446, 843, 849, 855, 861
Alw26I	GTCTC	2 cut(s)	60, 366
AlwI	GGATC	1 cut(s)	583
AoxI	GGCC	5 cut(s)	10, 304, 460, 818, 938
ApeKI	GCWGC	2 cut(s)	84, 436
ApoI	RAATTY	2 cut(s)	309, 563
AspLEI	GCGC	3 cut(s)	270, 541, 906
AspS9I	GGNCC	2 cut(s)	410, 461
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	684
AvaII	GGWCC	1 cut(s)	410
BalI	TGGCCA	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	42
BarI	GAAGNNNNNNTAC	2 cut(s)	697, 729
BauI	CACGAG	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	71, 448
BccI	CCATC	4 cut(s)	83, 612, 916, 930
BceAI	ACGGC	4 cut(s)	349, 651, 805, 925
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	4 cut(s)	81, 366, 414, 696
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	60, 366
BfaI	CTAG	4 cut(s)	834, 840, 864, 952
BisI	GCNGC	2 cut(s)	85, 437
BlsI	GCNGC	2 cut(s)	86, 438
Bme1390I	CCNGG	5 cut(s)	81, 275, 366, 414, 696
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	2 cut(s)	410, 461
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	5 cut(s)	81, 275, 366, 414, 696
BmsI	GCATC	3 cut(s)	481, 526, 532
BpmI	CTGGAG	4 cut(s)	460, 829, 835, 841
Bpu10I	CCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	948
BsaI	GGTCTC	1 cut(s)	366
BsaJI	CCNNGG	3 cut(s)	79, 632, 787
Bsc4I	CCNNNNNNNGG	5 cut(s)	371, 686, 701, 765, 792
Bse118I	RCCGGY	1 cut(s)	453
Bse1I	ACTGG	3 cut(s)	29, 156, 759
Bse3DI	GCAATG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	4 cut(s)	81, 366, 414, 696
BseDI	CCNNGG	3 cut(s)	79, 632, 787
BseGI	GGATG	2 cut(s)	60, 941
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	5 cut(s)	371, 686, 701, 765, 792
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	2 cut(s)	210, 255
BseNI	ACTGG	3 cut(s)	29, 156, 759
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	71, 448
BseYI	CCCAGC	1 cut(s)	469
Bsh1236I	CGCG	1 cut(s)	906
BshFI	GGCC	5 cut(s)	12, 306, 462, 820, 940
BshNI	GGYRCC	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	275, 454
BslI	CCNNNNNNNGG	5 cut(s)	371, 686, 701, 765, 792
BsmAI	GTCTC	2 cut(s)	60, 366
BsmBI	CGTCTC	1 cut(s)	60
BsnI	GGCC	5 cut(s)	12, 306, 462, 820, 940
Bso31I	GGTCTC	1 cut(s)	366
Bsp143I	GATC	4 cut(s)	166, 248, 510, 575
Bsp19I	CCATGG	1 cut(s)	632
BspANI	GGCC	5 cut(s)	12, 306, 462, 820, 940
BspCNI	CTCAG	2 cut(s)	209, 256
BspFNI	CGCG	1 cut(s)	906
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	583
BspT107I	GGYRCC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	453
BsrI	ACTGG	3 cut(s)	29, 156, 759
BssAI	RCCGGY	1 cut(s)	453
BssECI	CCNNGG	3 cut(s)	79, 632, 787
BssMI	GATC	4 cut(s)	166, 248, 510, 575
BssNI	GRCGYC	1 cut(s)	948
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	632, 787
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	4 cut(s)	81, 366, 414, 696
Bst4CI	ACNGT	1 cut(s)	505
BstACI	GRCGYC	1 cut(s)	948
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	3 cut(s)	196, 264, 418
BstDSI	CCRYGG	1 cut(s)	632
BstENI	CCTNNNNNAGG	2 cut(s)	369, 684
BstF5I	GGATG	2 cut(s)	60, 941
BstFNI	CGCG	1 cut(s)	906
BstHHI	GCGC	3 cut(s)	270, 541, 906
BstKTI	GATC	4 cut(s)	169, 251, 513, 578
BstMAI	GTCTC	2 cut(s)	60, 366
BstMBI	GATC	4 cut(s)	166, 248, 510, 575
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 552, 663
BstNI	CCWGG	4 cut(s)	81, 366, 414, 696
BstSCI	CCNGG	5 cut(s)	79, 273, 364, 412, 694
BstUI	CGCG	1 cut(s)	906
BstV1I	GCAGC	2 cut(s)	71, 448
BstX2I	RGATCY	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	575
BsuRI	GGCC	5 cut(s)	12, 306, 462, 820, 940
BtgI	CCRYGG	1 cut(s)	632
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	60, 941
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	4 cut(s)	22, 204, 541, 766
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	3 cut(s)	270, 541, 906
Cfr10I	RCCGGY	1 cut(s)	453
Cfr13I	GGNCC	2 cut(s)	410, 461
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	3 cut(s)	228, 629, 641
CspCI	CAANNNNNGTGG	2 cut(s)	602, 637
CviAII	CATG	4 cut(s)	125, 633, 654, 869
CviQI	GTAC	3 cut(s)	228, 629, 641
DdeI	CTNAG	3 cut(s)	196, 264, 418
DpnI	GATC	4 cut(s)	168, 250, 512, 577
DpnII	GATC	4 cut(s)	166, 248, 510, 575
EaeI	YGGCCR	4 cut(s)	10, 304, 818, 938
Eco130I	CCWWGG	2 cut(s)	632, 787
Eco31I	GGTCTC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	600
EcoNI	CCTNNNNNAGG	2 cut(s)	369, 684
EcoO109I	RGGNCCY	2 cut(s)	410, 461
EcoRII	CCWGG	4 cut(s)	79, 364, 412, 694
EcoT14I	CCWWGG	2 cut(s)	632, 787
ErhI	CCWWGG	2 cut(s)	632, 787
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	4 cut(s)	128, 636, 657, 872
FaiI	YATR	8 cut(s)	119, 126, 610, 634, 655, 714, 870, 902
FatI	CATG	4 cut(s)	124, 632, 653, 868
Fnu4HI	GCNGC	2 cut(s)	85, 437
FokI	GGATG	2 cut(s)	67, 948
Fsp4HI	GCNGC	2 cut(s)	85, 437
FspAI	RTGCGCAY	1 cut(s)	540
FspBI	CTAG	4 cut(s)	834, 840, 864, 952
FspI	TGCGCA	1 cut(s)	540
GlaI	GCGC	3 cut(s)	269, 540, 905
GluI	GCNGC	2 cut(s)	85, 437
GsaI	CCCAGC	1 cut(s)	473
GsuI	CTGGAG	4 cut(s)	460, 829, 835, 841
HaeIII	GGCC	5 cut(s)	12, 306, 462, 820, 940
HapII	CCGG	2 cut(s)	275, 454
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	3 cut(s)	270, 541, 906
Hin1I	GRCGYC	1 cut(s)	948
Hin1II	CATG	4 cut(s)	128, 636, 657, 872
Hin6I	GCGC	3 cut(s)	268, 539, 904
HinP1I	GCGC	3 cut(s)	268, 539, 904
HindIII	AAGCTT	1 cut(s)	189
HpaII	CCGG	2 cut(s)	275, 454
HphI	GGTGA	1 cut(s)	684
Hpy166II	GTNNAC	1 cut(s)	692
Hpy188I	TCNGA	5 cut(s)	54, 253, 535, 580, 921
Hpy188III	TCNNGA	7 cut(s)	104, 170, 263, 292, 477, 671, 933
Hpy8I	GTNNAC	1 cut(s)	692
Hpy99I	CGWCG	1 cut(s)	950
HpyAV	CCTTC	2 cut(s)	216, 786
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	2 cut(s)	390, 948
HpyCH4V	TGCA	5 cut(s)	39, 205, 494, 555, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 552, 663
HpyF3I	CTNAG	3 cut(s)	196, 264, 418
HpySE526I	ACGT	2 cut(s)	390, 948
Hsp92I	GRCGYC	1 cut(s)	948
Hsp92II	CATG	4 cut(s)	128, 636, 657, 872
HspAI	GCGC	3 cut(s)	268, 539, 904
Kzo9I	GATC	4 cut(s)	166, 248, 510, 575
LmnI	GCTCC	5 cut(s)	289, 698, 848, 854, 860
Lsp1109I	GCAGC	2 cut(s)	71, 448
LweI	GCATC	3 cut(s)	481, 526, 532
MaeI	CTAG	4 cut(s)	834, 840, 864, 952
MaeII	ACGT	2 cut(s)	390, 948
MaeIII	GTNAC	6 cut(s)	29, 170, 376, 386, 599, 752
MalI	GATC	4 cut(s)	168, 250, 512, 577
MboI	GATC	4 cut(s)	166, 248, 510, 575
MboII	GAAGA	1 cut(s)	434
MfeI	CAATTG	3 cut(s)	34, 209, 486
MflI	RGATCY	1 cut(s)	575
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	6 cut(s)	34, 209, 309, 337, 486, 563
MluNI	TGGCCA	1 cut(s)	306
MnlI	CCTC	9 cut(s)	53, 86, 171, 297, 377, 473, 484, 690, 813
Mox20I	TGGCCA	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	1 cut(s)	507
Msp20I	TGGCCA	1 cut(s)	306
MspI	CCGG	2 cut(s)	275, 454
MspR9I	CCNGG	5 cut(s)	81, 275, 366, 414, 696
MunI	CAATTG	3 cut(s)	34, 209, 486
MvaI	CCWGG	4 cut(s)	81, 366, 414, 696
MvnI	CGCG	1 cut(s)	906
MwoI	GCNNNNNNNGC	3 cut(s)	84, 552, 663
NciI	CCSGG	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	632
NdeII	GATC	4 cut(s)	166, 248, 510, 575
NlaIII	CATG	4 cut(s)	128, 636, 657, 872
NlaIV	GGNNCC	1 cut(s)	44
NmuCI	GTSAC	3 cut(s)	170, 376, 599
NsbI	TGCGCA	1 cut(s)	540
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	86, 438
PpuMI	RGGWCCY	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	410
Psp6I	CCWGG	4 cut(s)	79, 364, 412, 694
PspFI	CCCAGC	1 cut(s)	469
PspGI	CCWGG	4 cut(s)	79, 364, 412, 694
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	410, 461
PspPPI	RGGWCCY	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	575
RsaI	GTAC	3 cut(s)	229, 630, 642
RsaNI	GTAC	3 cut(s)	228, 629, 641
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	2 cut(s)	85, 437
Sau3AI	GATC	4 cut(s)	166, 248, 510, 575
Sau96I	GGNCC	2 cut(s)	410, 461
ScrFI	CCNGG	5 cut(s)	81, 275, 366, 414, 696
SfaNI	GCATC	3 cut(s)	481, 526, 532
SinI	GGWCC	1 cut(s)	410
Sse9I	AATT	6 cut(s)	34, 209, 309, 337, 486, 563
SspMI	CTAG	4 cut(s)	834, 840, 864, 952
StyD4I	CCNGG	5 cut(s)	79, 273, 364, 412, 694
StyI	CCWWGG	2 cut(s)	632, 787
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	2 cut(s)	393, 951
TaqI	TCGA	4 cut(s)	319, 567, 727, 945
TasI	AATT	6 cut(s)	34, 209, 309, 337, 486, 563
TatI	WGTACW	1 cut(s)	640
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	4 cut(s)	29, 204, 548, 766
TseFI	GTSAC	3 cut(s)	170, 376, 599
TseI	GCWGC	2 cut(s)	84, 436
Tsp45I	GTSAC	3 cut(s)	170, 376, 599
TspDTI	ATGAA	2 cut(s)	113, 882
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	4 cut(s)	29, 204, 548, 766
VpaK11BI	GGWCC	1 cut(s)	410
XagI	CCTNNNNNAGG	2 cut(s)	369, 684
XapI	RAATTY	2 cut(s)	309, 563
XspI	CTAG	4 cut(s)	834, 840, 864, 952
ZraI	GACGTC	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.