Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007150

Physical Location & Seq

Genomic Coordinates Reverse (-)

68032164 .. 68033078

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG473700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTCAAGCAGTCGAAACACCCATTGGTGTTACGAATGCAGGCGGCCAACTCAGCTGCAAGGGCGAGATGCAGTTTGCCGAAACTGCAGTGGAGGATTTGTTCAAGAACTTGATGACATGGTTCATATCAGCCCACTGGATTTCTTTGGACCTCACAATGATGAGGATCGTGATAGGAGGTTTGGATTCATGGATGCCTTTTCAGCTTGGCAGCAGTTAACAGACAGAAGAGGTAGCGATAATATAAGGGGTAGATCAGATTTAGTTCCTGAACATTCCCCGGCGTTTTCTCCTTTGTTGATTTTTGGTGGCCAAATTCCTGTTCGATTTGGGAATGGTGCATTTGAAGCTCTGTTCAATGGGTCTCCTGGAATAGGTGTAACACGGGGTAATGTGGGTGATTATTTTGTTGGTCCTGGCTTGGAAGAATTGTTTGAGCAGCTTTCAGCAAATGATAGGAGGGGCCCTCCCCCTGCATCGAGGCTTTCAATCGATGCAATGCCAACTATTAAGATCTCGAATAAGCATCTTCGTTCTGATTCGCATTGCCCTGTTTGCCAAGACAAATTTGAGCTGGGATCTGAAGCAAGGCAAATGCCATGTAAGCATGTATATCACTCAGATTGTATTGTACCATGGCTAGTCCAGCACAACTCATGCCCTGTTTGCCGCCAAGAACTGCATCCACAAGGATCTGGAAGTGGTCGTAGCTCAAACATTAGAAGTGGTGGTTTTGGTAGTAATACTGGTGGAAGGGAAAGCCAAGGAAGACGAAATCCTTTTTCTTCTCTGTGGCCGTTTCGCTCGTCTAGTTCTAGCTCTAGTTCTAACCGTAACCCACCACATGAAAGTAGCCCGCCAACTACGCGTGAAAATAGCAATCAAATGGGGTATTCAGGATGGCCCTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000820 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006521 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010498 GO:0010565 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030104 GO:0030163 GO:0030312 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0033238 GO:0033239 GO:0036211 GO:0042221 GO:0042592 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0047484 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051603 GO:0061630 GO:0061659 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902005 GO:1902006 GO:2000070 GO:2000214 GO:2000215 GO:2000282 GO:2000283

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

304

Amino Acids

33.71

Weight (kDa)

7.15

Isoelectric Point (pI)

74.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	6 - 37	7.5e-08	zinc-ribbon
zf-rbx1	PF12678	180 - 224	6.3e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	182 - 224	1.1e-13	Ring finger domain
zf-C3HC4_2	PF13923	183 - 223	5.6e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	183 - 210	1.6e-07	RING-like zinc finger
zf-RING_UBOX	PF13445	183 - 221	6e-07	RING-type zinc-finger
zf-C3HC4	PF00097	183 - 223	8.6e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40830 AT2G40830 AT2G40830 AT2G40830
fragaria_vesca	FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690 FvH4_2g38690
malus_domestica	MD09G1209600.v1.1 MD17G1191600.v1.1
prunus_persica	Prupe.3G067600_v2.0.a1 Prupe.3G067600_v2.0.a1
pyrus_communis	pycom09g12590 pycom17g19850
rosa_chinensis	RchiOBHm_Chr6g0302621
rosa_laevigata	RLG00000011156
rosa_multiflora	Rmu_co8203528.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165510
rosa_rugosa	Rorug06G0315500
rosa_samantha	Rh6AG428800 Rh6BG473700 Rh6CG441100 Rh6DG427800
rosa_wichuraiana	Rw6G037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	868
AciI	CCGC	3 cut(s)	43, 670, 857
AclWI	GGATC	3 cut(s)	174, 586, 700
AcoI	YGGCCR	3 cut(s)	44, 310, 794
AcsI	RAATTY	2 cut(s)	315, 566
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	1 cut(s)	633
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	866
AgsI	TTSAA	4 cut(s)	104, 347, 358, 489
AjnI	CCWGG	2 cut(s)	367, 415
AjuI	GAANNNNNNNTTGG	4 cut(s)	7, 39, 306, 338
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	7 cut(s)	55, 206, 350, 442, 574, 711, 819
AluI	AGCT	7 cut(s)	55, 206, 350, 442, 574, 711, 819
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	3 cut(s)	174, 586, 700
AoxI	GGCC	5 cut(s)	44, 310, 463, 794, 902
ApaI	GGGCCC	1 cut(s)	467
ApeKI	GCWGC	3 cut(s)	55, 211, 439
ApoI	RAATTY	2 cut(s)	315, 566
AspS9I	GGNCC	5 cut(s)	149, 413, 463, 464, 903
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	2 cut(s)	149, 413
BaeGI	GKGCMC	1 cut(s)	467
BalI	TGGCCA	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	775
BbvI	GCAGC	3 cut(s)	42, 223, 451
BccI	CCATC	1 cut(s)	894
BceAI	ACGGC	1 cut(s)	781
BciT130I	CCWGG	2 cut(s)	369, 417
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	4 cut(s)	641, 810, 816, 822
BfmI	CTRYAG	1 cut(s)	85
BglII	AGATCT	1 cut(s)	513
BisI	GCNGC	5 cut(s)	44, 56, 212, 440, 670
BlsI	GCNGC	5 cut(s)	45, 57, 213, 441, 671
Bme1390I	CCNGG	3 cut(s)	281, 369, 417
Bme18I	GGWCC	2 cut(s)	149, 413
BmgT120I	GGNCC	5 cut(s)	149, 413, 463, 464, 903
BmiI	GGNNCC	2 cut(s)	464, 465
BmrFI	CCNGG	3 cut(s)	281, 369, 417
BmsI	GCATC	6 cut(s)	58, 184, 484, 485, 535, 691
BpiI	GAAGAC	1 cut(s)	775
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
BpuMI	CCSGG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	492
BsaBI	GATNNNNATC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	279, 635, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	141, 751
Bse3DI	GCAATG	2 cut(s)	504, 544
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	2 cut(s)	369, 417
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	3 cut(s)	279, 635, 763
BseGI	GGATG	3 cut(s)	199, 682, 905
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	2 cut(s)	504, 544
BseMII	CTCAG	2 cut(s)	65, 633
BseNI	ACTGG	2 cut(s)	141, 751
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	3 cut(s)	42, 223, 451
BseYI	CCCAGC	1 cut(s)	574
Bsh1236I	CGCG	1 cut(s)	868
BshFI	GGCC	5 cut(s)	46, 312, 465, 796, 904
BshVI	ATCGAT	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	369
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	5 cut(s)	46, 312, 465, 796, 904
Bso31I	GGTCTC	1 cut(s)	369
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	5 cut(s)	166, 254, 513, 578, 692
Bsp19I	CCATGG	1 cut(s)	635
BspACI	CCGC	3 cut(s)	43, 670, 857
BspANI	GGCC	5 cut(s)	46, 312, 465, 796, 904
BspCNI	CTCAG	2 cut(s)	64, 632
BspDI	ATCGAT	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	868
BspLI	GGNNCC	2 cut(s)	464, 465
BspMAI	CTGCAG	1 cut(s)	89
BspPI	GGATC	3 cut(s)	174, 586, 700
BspTNI	GGTCTC	1 cut(s)	369
BsrDI	GCAATG	2 cut(s)	504, 544
BsrI	ACTGG	2 cut(s)	141, 751
BssECI	CCNNGG	3 cut(s)	279, 635, 763
BssMI	GATC	5 cut(s)	166, 254, 513, 578, 692
BssT1I	CCWWGG	2 cut(s)	635, 763
Bst2UI	CCWGG	2 cut(s)	369, 417
Bst4CI	ACNGT	1 cut(s)	833
Bst6I	CTCTTC	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	41, 857
BstDEI	CTNAG	2 cut(s)	51, 619
BstDSI	CCRYGG	1 cut(s)	635
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstF5I	GGATG	3 cut(s)	199, 682, 905
BstFNI	CGCG	1 cut(s)	868
BstKTI	GATC	5 cut(s)	169, 257, 516, 581, 695
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	5 cut(s)	166, 254, 513, 578, 692
BstNI	CCWGG	2 cut(s)	369, 417
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	3 cut(s)	279, 367, 415
BstSFI	CTRYAG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	467
BstUI	CGCG	1 cut(s)	868
BstV1I	GCAGC	3 cut(s)	42, 223, 451
BstV2I	GAAGAC	1 cut(s)	775
BstX2I	RGATCY	3 cut(s)	513, 578, 692
BstYI	RGATCY	3 cut(s)	513, 578, 692
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	5 cut(s)	46, 312, 465, 796, 904
BsuTUI	ATCGAT	1 cut(s)	492
BtgI	CCRYGG	1 cut(s)	635
BtsCI	GGATG	3 cut(s)	199, 682, 905
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	94, 134
Cac8I	GCNNGC	2 cut(s)	41, 857
Cfr13I	GGNCC	5 cut(s)	149, 413, 463, 464, 903
ClaI	ATCGAT	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	632
CviAII	CATG	7 cut(s)	118, 190, 600, 608, 636, 657, 845
CviQI	GTAC	1 cut(s)	632
DdeI	CTNAG	2 cut(s)	51, 619
DpnI	GATC	5 cut(s)	168, 256, 515, 580, 694
DpnII	GATC	5 cut(s)	166, 254, 513, 578, 692
EaeI	YGGCCR	3 cut(s)	44, 310, 794
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Eco130I	CCWWGG	2 cut(s)	635, 763
Eco24I	GRGCYC	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	369
Eco47I	GGWCC	2 cut(s)	149, 413
Eco57I	CTGAAG	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoO109I	RGGNCCY	2 cut(s)	463, 464
EcoRII	CCWGG	2 cut(s)	367, 415
EcoT14I	CCWWGG	2 cut(s)	635, 763
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	2 cut(s)	635, 763
FaeI	CATG	7 cut(s)	121, 193, 603, 611, 639, 660, 848
FatI	CATG	7 cut(s)	117, 189, 599, 607, 635, 656, 844
FauI	CCCGC	1 cut(s)	864
Fnu4HI	GCNGC	5 cut(s)	44, 56, 212, 440, 670
FokI	GGATG	2 cut(s)	206, 669
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	5 cut(s)	44, 56, 212, 440, 670
FspBI	CTAG	4 cut(s)	641, 810, 816, 822
GluI	GCNGC	5 cut(s)	44, 56, 212, 440, 670
GsaI	CCCAGC	1 cut(s)	578
HaeIII	GGCC	5 cut(s)	46, 312, 465, 796, 904
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	7 cut(s)	121, 193, 603, 611, 639, 660, 848
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HinfI	GANTC	2 cut(s)	186, 539
HpaI	GTTAAC	1 cut(s)	219
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	4 cut(s)	259, 538, 583, 622
Hpy188III	TCNNGA	6 cut(s)	104, 170, 269, 517, 696, 897
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	747
HpyCH4III	ACNGT	1 cut(s)	833
HpyCH4V	TGCA	8 cut(s)	39, 58, 71, 87, 341, 476, 497, 682
HpyF3I	CTNAG	2 cut(s)	51, 619
Hsp92II	CATG	7 cut(s)	121, 193, 603, 611, 639, 660, 848
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	5 cut(s)	166, 254, 513, 578, 692
Lsp1109I	GCAGC	3 cut(s)	42, 223, 451
LweI	GCATC	6 cut(s)	58, 184, 484, 485, 535, 691
MaeI	CTAG	4 cut(s)	641, 810, 816, 822
MaeIII	GTNAC	3 cut(s)	29, 379, 833
MalI	GATC	5 cut(s)	168, 256, 515, 580, 694
MboI	GATC	5 cut(s)	166, 254, 513, 578, 692
MboII	GAAGA	5 cut(s)	240, 437, 521, 777, 780
MflI	RGATCY	3 cut(s)	513, 578, 692
MhlI	GDGCHC	1 cut(s)	467
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	3 cut(s)	315, 428, 566
MluI	ACGCGT	1 cut(s)	866
MluNI	TGGCCA	1 cut(s)	312
MnlI	CCTC	8 cut(s)	86, 157, 162, 171, 224, 453, 474, 477
Mox20I	TGGCCA	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	2 cut(s)	218, 510
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	3 cut(s)	281, 369, 417
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	2 cut(s)	369, 417
MvnI	CGCG	1 cut(s)	868
NciI	CCSGG	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	635
NdeII	GATC	5 cut(s)	166, 254, 513, 578, 692
NlaIII	CATG	7 cut(s)	121, 193, 603, 611, 639, 660, 848
NlaIV	GGNNCC	2 cut(s)	464, 465
NspI	RCATGY	1 cut(s)	611
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	186, 539
PfoI	TCCNGGA	1 cut(s)	367
PkrI	GCNGC	5 cut(s)	45, 57, 213, 441, 671
Psp6I	CCWGG	2 cut(s)	367, 415
PspFI	CCCAGC	1 cut(s)	574
PspGI	CCWGG	2 cut(s)	367, 415
PspN4I	GGNNCC	2 cut(s)	464, 465
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	5 cut(s)	149, 413, 463, 464, 903
PstI	CTGCAG	1 cut(s)	89
PsuI	RGATCY	3 cut(s)	513, 578, 692
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	218, 510
SatI	GCNGC	5 cut(s)	44, 56, 212, 440, 670
Sau3AI	GATC	5 cut(s)	166, 254, 513, 578, 692
Sau96I	GGNCC	5 cut(s)	149, 413, 463, 464, 903
ScrFI	CCNGG	3 cut(s)	281, 369, 417
SduI	GDGCHC	1 cut(s)	467
SfaNI	GCATC	6 cut(s)	58, 184, 484, 485, 535, 691
SfcI	CTRYAG	1 cut(s)	85
SinI	GGWCC	2 cut(s)	149, 413
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	3 cut(s)	315, 428, 566
SsiI	CCGC	3 cut(s)	43, 670, 857
SspMI	CTAG	4 cut(s)	641, 810, 816, 822
StyD4I	CCNGG	3 cut(s)	279, 367, 415
StyI	CCWWGG	2 cut(s)	635, 763
TaaI	ACNGT	1 cut(s)	833
TaqI	TCGA	5 cut(s)	13, 325, 479, 492, 518
TasI	AATT	3 cut(s)	315, 428, 566
TauI	GCSGC	2 cut(s)	46, 672
TfiI	GAWTC	2 cut(s)	186, 539
Tru1I	TTAA	2 cut(s)	218, 510
Tru9I	TTAA	2 cut(s)	218, 510
TscAI	CASTG	2 cut(s)	94, 141
TseI	GCWGC	3 cut(s)	55, 211, 439
TspDTI	ATGAA	3 cut(s)	113, 178, 861
TspRI	CASTG	2 cut(s)	94, 141
VpaK11BI	GGWCC	2 cut(s)	149, 413
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	2 cut(s)	315, 566
XceI	RCATGY	1 cut(s)	611
XspI	CTAG	4 cut(s)	641, 810, 816, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.