AT2G40990

Belongs to the DHHC palmitoyltransferase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
17105097 .. 17107030
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40990.1

Sequence Viewer

Length: 1236 bp
ATGGGGAGGAAGAAAAGCTGTCATGTCCATAATGCTCCTTCCGATGACGATATAATGTTTTCTCAAGATCATAAACCCAAGAGAATCTACCAACTCTGGCCCGGCAACAATAGATTTTATTGTGGAGGGAGACTAGTCTTTGGTCCAGATGCATCGTCTCTCCTTCTGACAACAGCTATGATTGGAGGTCCTGCTCTCACTTTCTGCATACGAATGGTTTTTTTGATCGGAAAACGCTATCCTTTGTTCCACTCTCTTATATTGTTGGGTGCACTTTTGCTCACTGTCCTGGATTTTACATTTCTCTTCTTAACATCATCGAGAGACCCCGGGATTATCCCTAGAAACAAAGAAGCACCTGAAGCAGAAGGGCTTGATATGATCACTCAATCCTCAGAGTGGGTAAACAACAAACTCGGTAATACAAAGATACCTCGAACGAAGGATATATTGGTGAATGGCTACACTGTCAAAGTTAAATTTTGTGATACATGTTTGCTTTACCGTCCTCCTCGCGCCTCTCACTGTTCAATCTGTAACAACTGTGTTCAAAGGTTTGATCATCATTGTCCATGGGTTGGCCAATGCATAGCCTTACGAAACTATCCATACTTCATCTGTTTCATATCAACTTCAACACTCCTCTGCTTGTACGTCTTTGTCTTCTCATGGGTCAGTATGCTTGAGGTACACGGCAAGATGTTGTTAATGGTCATCACAAACGACTTAGTATTTGTTGTTCTCATCCTCTACTGCTTCGTCGTTGTCTGGTTTGTCGGCGGGCTCACTGTTTTCCATCTCTACCTCATCTGCACCAATCAGACAACTTATGAGAATTTCCGGTATCGGTATGACAAGAAAGAAAACCCTTATGGAAAGGGTCTCTTCAAGAACCTATATGAGTTGTTCTTTGCCAGAATTCCACCTCCCATGATCAACTTCAGAGACTGGGCTCCAGAGGAACCTGACGAGGAGGTTGGATCCATTGCATCTGAGCTAGACCGAACTTTTGGACCCCGAGGAGATAAATATGATATGGAAATGGAAATTGGCGGTTGCAAAAACAGTAAGGTCGGTTTACAACTCCATACACTGGAGTATGACAACAACAACAGCAGCGAAGAAACTGTCAAGAAGAAAGGTGTAAGCGAAGAAACCGCCGCGTTTTACATCCCGGGGATTCAAGAACCCGCGAATATAACAAGAAACTCGAGCATTGATGTGAGATCGAGGTAG

Protein Analysis

411

Amino Acids

46.99

Weight (kDa)

8.1

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 160 - 281 4.1e-35 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 578, 1093
AccII CGCG 3 cut(s) 516, 1163, 1193
AciI CCGC 5 cut(s) 780, 1053, 1158, 1161, 1191
AclWI GGATC 2 cut(s) 975, 988
AcoI YGGCCR 1 cut(s) 580
AcsI RAATTY 3 cut(s) 479, 835, 918
AcuI CTGAAG 2 cut(s) 381, 925
AfaI GTAC 2 cut(s) 653, 690
AfiI CCNNNNNNNGG 3 cut(s) 399, 578, 1093
AflIII ACRYGT 1 cut(s) 491
AgsI TTSAA 5 cut(s) 531, 551, 636, 889, 1184
AhlI ACTAGT 1 cut(s) 133
AjnI CCWGG 1 cut(s) 288
AjuI GAANNNNNNNTTGG 4 cut(s) 434, 466, 1032, 1064
AluBI AGCT 3 cut(s) 18, 176, 997
AluI AGCT 3 cut(s) 18, 176, 997
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 5 cut(s) 124, 162, 318, 887, 939
Alw44I GTGCAC 1 cut(s) 270
AlwI GGATC 2 cut(s) 975, 988
AlwNI CAGNNNCTG 1 cut(s) 948
Ama87I CYCGRG 4 cut(s) 329, 1017, 1174, 1210
AoxI GGCC 2 cut(s) 98, 580
ApaLI GTGCAC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 1116
ApoI RAATTY 3 cut(s) 479, 835, 918
ArsI GACNNNNNNTTYG 6 cut(s) 716, 748, 992, 1024, 1113, 1145
AspLEI GCGC 1 cut(s) 518
AspS9I GGNCC 4 cut(s) 99, 143, 188, 1013
AsuC2I CCSGG 5 cut(s) 102, 330, 331, 1175, 1176
AsuHPI GGTGA 1 cut(s) 466
AvaI CYCGRG 4 cut(s) 329, 1017, 1174, 1210
AvaII GGWCC 3 cut(s) 143, 188, 1013
BaeGI GKGCMC 1 cut(s) 274
BalI TGGCCA 1 cut(s) 582
BamHI GGATCC 1 cut(s) 980
BanII GRGCYC 2 cut(s) 786, 955
BbsI GAAGAC 1 cut(s) 655
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 1128
BccI CCATC 1 cut(s) 804
BceAI ACGGC 1 cut(s) 709
BciT130I CCWGG 1 cut(s) 290
BclI TGATCA 3 cut(s) 381, 559, 933
BcnI CCSGG 5 cut(s) 102, 330, 331, 1175, 1176
BcoDI GTCTC 5 cut(s) 124, 162, 318, 887, 939
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 3 cut(s) 134, 342, 998
BisI GCNGC 2 cut(s) 1117, 1161
BlsI GCNGC 2 cut(s) 1118, 1162
Bme1390I CCNGG 6 cut(s) 102, 290, 330, 331, 1175, 1176
Bme18I GGWCC 3 cut(s) 143, 188, 1013
BmeT110I CYCGRG 4 cut(s) 329, 1017, 1174, 1210
BmgT120I GGNCC 4 cut(s) 99, 143, 188, 1013
BmiI GGNNCC 4 cut(s) 954, 963, 982, 1015
BmrFI CCNGG 6 cut(s) 102, 290, 330, 331, 1175, 1176
BmrI ACTGGG 1 cut(s) 958
BmsI GCATC 3 cut(s) 139, 161, 998
BmuI ACTGGG 1 cut(s) 958
BpiI GAAGAC 1 cut(s) 655
BpmI CTGGAG 2 cut(s) 939, 1115
BpuEI CTTGAG 2 cut(s) 48, 704
BpuMI CCSGG 5 cut(s) 102, 330, 331, 1175, 1176
BsaI GGTCTC 2 cut(s) 318, 887
BsaJI CCNNGG 6 cut(s) 328, 329, 572, 1018, 1174, 1175
BsaWI WCCGGW 1 cut(s) 840
Bsc4I CCNNNNNNNGG 3 cut(s) 399, 578, 1093
Bse1I ACTGG 2 cut(s) 953, 1098
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 6 cut(s) 328, 329, 572, 1018, 1174, 1175
BseGI GGATG 2 cut(s) 744, 1170
BseLI CCNNNNNNNGG 3 cut(s) 399, 578, 1093
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 2 cut(s) 408, 984
BseNI ACTGG 2 cut(s) 953, 1098
BseRI GAGGAG 4 cut(s) 501, 632, 986, 1035
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 1 cut(s) 1128
BsgI GTGCAG 1 cut(s) 796
Bsh1236I CGCG 3 cut(s) 516, 1163, 1193
BshFI GGCC 2 cut(s) 100, 582
BsiHKAI GWGCWC 1 cut(s) 274
BsiHKCI CYCGRG 4 cut(s) 329, 1017, 1174, 1210
BsiSI CCGG 4 cut(s) 102, 330, 841, 1175
BslI CCNNNNNNNGG 3 cut(s) 399, 578, 1093
BsmAI GTCTC 5 cut(s) 124, 162, 318, 887, 939
BsmBI CGTCTC 1 cut(s) 162
BsnI GGCC 2 cut(s) 100, 582
Bso31I GGTCTC 2 cut(s) 318, 887
BsoBI CYCGRG 4 cut(s) 329, 1017, 1174, 1210
Bsp1286I GDGCHC 3 cut(s) 274, 786, 955
Bsp143I GATC 7 cut(s) 67, 225, 381, 559, 933, 980, 1226
Bsp19I CCATGG 1 cut(s) 572
BspACI CCGC 5 cut(s) 780, 1053, 1158, 1161, 1191
BspANI GGCC 2 cut(s) 100, 582
BspCNI CTCAG 2 cut(s) 407, 985
BspFNI CGCG 3 cut(s) 516, 1163, 1193
BspLI GGNNCC 4 cut(s) 954, 963, 982, 1015
BspPI GGATC 2 cut(s) 975, 988
BspTNI GGTCTC 2 cut(s) 318, 887
BsrDI GCAATG 1 cut(s) 984
BsrI ACTGG 2 cut(s) 953, 1098
BssECI CCNNGG 6 cut(s) 328, 329, 572, 1018, 1174, 1175
BssMI GATC 7 cut(s) 67, 225, 381, 559, 933, 980, 1226
BssT1I CCWWGG 1 cut(s) 572
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 8 cut(s) 286, 469, 506, 527, 545, 790, 1067, 1129
Bst6I CTCTTC 2 cut(s) 311, 890
BstC8I GCNNGC 1 cut(s) 782
BstDEI CTNAG 3 cut(s) 394, 727, 993
BstDSI CCRYGG 1 cut(s) 572
BstF5I GGATG 2 cut(s) 744, 1170
BstFNI CGCG 3 cut(s) 516, 1163, 1193
BstHHI GCGC 1 cut(s) 518
BstKTI GATC 7 cut(s) 70, 228, 384, 562, 936, 983, 1229
BstMAI GTCTC 5 cut(s) 124, 162, 318, 887, 939
BstMBI GATC 7 cut(s) 67, 225, 381, 559, 933, 980, 1226
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 495
BstSCI CCNGG 6 cut(s) 100, 288, 328, 329, 1173, 1174
BstSLI GKGCMC 1 cut(s) 274
BstUI CGCG 3 cut(s) 516, 1163, 1193
BstV1I GCAGC 1 cut(s) 1128
BstV2I GAAGAC 1 cut(s) 655
BstX2I RGATCY 1 cut(s) 980
BstYI RGATCY 1 cut(s) 980
BsuRI GGCC 2 cut(s) 100, 582
BtgI CCRYGG 1 cut(s) 572
BtsCI GGATG 2 cut(s) 744, 1170
BtsIMutI CAGTG 5 cut(s) 282, 465, 523, 786, 1091
Cac8I GCNNGC 1 cut(s) 782
CaiI CAGNNNCTG 1 cut(s) 948
CfoI GCGC 1 cut(s) 518
Cfr13I GGNCC 4 cut(s) 99, 143, 188, 1013
Cfr9I CCCGGG 2 cut(s) 329, 1174
Csp6I GTAC 2 cut(s) 652, 689
CviAII CATG 5 cut(s) 23, 492, 573, 669, 931
CviQI GTAC 2 cut(s) 652, 689
DdeI CTNAG 3 cut(s) 394, 727, 993
DpnI GATC 7 cut(s) 69, 227, 383, 561, 935, 982, 1228
DpnII GATC 7 cut(s) 67, 225, 381, 559, 933, 980, 1226
EaeI YGGCCR 1 cut(s) 580
Eam1104I CTCTTC 2 cut(s) 311, 890
EarI CTCTTC 2 cut(s) 311, 890
Eco130I CCWWGG 1 cut(s) 572
Eco24I GRGCYC 2 cut(s) 786, 955
Eco31I GGTCTC 2 cut(s) 318, 887
Eco47I GGWCC 3 cut(s) 143, 188, 1013
Eco57I CTGAAG 2 cut(s) 381, 925
Eco88I CYCGRG 4 cut(s) 329, 1017, 1174, 1210
EcoO109I RGGNCCY 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 918
EcoRII CCWGG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 572
EcoT22I ATGCAT 2 cut(s) 154, 590
EcoT38I GRGCYC 2 cut(s) 786, 955
ErhI CCWWGG 1 cut(s) 572
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 5 cut(s) 26, 495, 576, 672, 934
FalI AAGNNNNNCTT 2 cut(s) 869, 901
FatI CATG 5 cut(s) 22, 491, 572, 668, 930
FauI CCCGC 2 cut(s) 773, 1198
FbaI TGATCA 3 cut(s) 381, 559, 933
Fnu4HI GCNGC 2 cut(s) 1117, 1161
FokI GGATG 2 cut(s) 731, 1157
FriOI GRGCYC 2 cut(s) 786, 955
Fsp4HI GCNGC 2 cut(s) 1117, 1161
FspBI CTAG 3 cut(s) 134, 342, 998
GlaI GCGC 1 cut(s) 517
GluI GCNGC 2 cut(s) 1117, 1161
GsuI CTGGAG 2 cut(s) 939, 1115
HaeIII GGCC 2 cut(s) 100, 582
HapII CCGG 4 cut(s) 102, 330, 841, 1175
HhaI GCGC 1 cut(s) 518
Hin1II CATG 5 cut(s) 26, 495, 576, 672, 934
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HinfI GANTC 2 cut(s) 84, 1180
HpaII CCGG 4 cut(s) 102, 330, 841, 1175
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 4 cut(s) 272, 406, 691, 1079
Hpy188I TCNGA 7 cut(s) 43, 168, 230, 397, 822, 944, 994
Hpy188III TCNNGA 7 cut(s) 65, 146, 321, 889, 956, 1132, 1184
Hpy8I GTNNAC 4 cut(s) 272, 406, 691, 1079
Hpy99I CGWCG 1 cut(s) 764
HpyAV CCTTC 4 cut(s) 48, 173, 362, 436
HpyCH4III ACNGT 8 cut(s) 286, 469, 506, 527, 545, 790, 1067, 1129
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 7 cut(s) 152, 207, 272, 588, 813, 989, 1059
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 3 cut(s) 394, 727, 993
HpySE526I ACGT 1 cut(s) 654
Hsp92II CATG 5 cut(s) 26, 495, 576, 672, 934
HspAI GCGC 1 cut(s) 516
Ksp22I TGATCA 3 cut(s) 381, 559, 933
Kzo9I GATC 7 cut(s) 67, 225, 381, 559, 933, 980, 1226
LmnI GCTCC 2 cut(s) 40, 958
Lsp1109I GCAGC 1 cut(s) 1128
LweI GCATC 3 cut(s) 139, 161, 998
MaeI CTAG 3 cut(s) 134, 342, 998
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 1 cut(s) 536
MalI GATC 7 cut(s) 69, 227, 383, 561, 935, 982, 1228
MboI GATC 7 cut(s) 67, 225, 381, 559, 933, 980, 1226
MboII GAAGA 7 cut(s) 22, 298, 655, 877, 1133, 1147, 1163
MflI RGATCY 1 cut(s) 980
MhlI GDGCHC 3 cut(s) 274, 786, 955
MlsI TGGCCA 1 cut(s) 582
MluCI AATT 4 cut(s) 479, 835, 918, 1047
MluNI TGGCCA 1 cut(s) 582
MmeI TCCRAC 1 cut(s) 958
Mox20I TGGCCA 1 cut(s) 582
Mph1103I ATGCAT 2 cut(s) 154, 590
MscI TGGCCA 1 cut(s) 582
MseI TTAA 3 cut(s) 311, 477, 707
MslI CAYNNNNRTG 2 cut(s) 212, 1220
Msp20I TGGCCA 1 cut(s) 582
MspI CCGG 4 cut(s) 102, 330, 841, 1175
MspR9I CCNGG 6 cut(s) 102, 290, 330, 331, 1175, 1176
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 3 cut(s) 516, 1163, 1193
MwoI GCNNNNNNNGC 1 cut(s) 362
NciI CCSGG 5 cut(s) 102, 330, 331, 1175, 1176
NcoI CCATGG 1 cut(s) 572
NdeII GATC 7 cut(s) 67, 225, 381, 559, 933, 980, 1226
NlaIII CATG 5 cut(s) 26, 495, 576, 672, 934
NlaIV GGNNCC 4 cut(s) 954, 963, 982, 1015
NsiI ATGCAT 2 cut(s) 154, 590
NspI RCATGY 1 cut(s) 495
PaeR7I CTCGAG 1 cut(s) 1210
PciI ACATGT 1 cut(s) 491
PfeI GAWTC 2 cut(s) 84, 1180
PflMI CCANNNNNTGG 2 cut(s) 578, 1093
PfoI TCCNGGA 1 cut(s) 288
PkrI GCNGC 2 cut(s) 1118, 1162
PpuMI RGGWCCY 1 cut(s) 188
PscI ACATGT 1 cut(s) 491
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 4 cut(s) 954, 963, 982, 1015
PspPI GGNCC 4 cut(s) 99, 143, 188, 1013
PspPPI RGGWCCY 1 cut(s) 188
PspXI VCTCGAGB 1 cut(s) 1210
PsrI GAACNNNNNNTAC 2 cut(s) 723, 755
PstNI CAGNNNCTG 1 cut(s) 948
PsuI RGATCY 1 cut(s) 980
RsaI GTAC 2 cut(s) 653, 690
RsaNI GTAC 2 cut(s) 652, 689
RseI CAYNNNNRTG 2 cut(s) 212, 1220
SaqAI TTAA 3 cut(s) 311, 477, 707
SatI GCNGC 2 cut(s) 1117, 1161
Sau3AI GATC 7 cut(s) 67, 225, 381, 559, 933, 980, 1226
Sau96I GGNCC 4 cut(s) 99, 143, 188, 1013
ScrFI CCNGG 6 cut(s) 102, 290, 330, 331, 1175, 1176
SduI GDGCHC 3 cut(s) 274, 786, 955
SfaNI GCATC 3 cut(s) 139, 161, 998
Sfr274I CTCGAG 1 cut(s) 1210
SinI GGWCC 3 cut(s) 143, 188, 1013
SlaI CTCGAG 1 cut(s) 1210
SmaI CCCGGG 2 cut(s) 331, 1176
SmiMI CAYNNNNRTG 2 cut(s) 212, 1220
SmlI CTYRAG 3 cut(s) 63, 683, 1210
SmoI CTYRAG 3 cut(s) 63, 683, 1210
SpeI ACTAGT 1 cut(s) 133
Sse9I AATT 4 cut(s) 479, 835, 918, 1047
SsiI CCGC 5 cut(s) 780, 1053, 1158, 1161, 1191
SspMI CTAG 3 cut(s) 134, 342, 998
StyD4I CCNGG 6 cut(s) 100, 288, 328, 329, 1173, 1174
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 8 cut(s) 286, 469, 506, 527, 545, 790, 1067, 1129
TaiI ACGT 1 cut(s) 657
TaqI TCGA 4 cut(s) 320, 436, 1211, 1229
TaqII GACCGA 1 cut(s) 1017
TasI AATT 4 cut(s) 479, 835, 918, 1047
TauI GCSGC 1 cut(s) 1163
TfiI GAWTC 2 cut(s) 84, 1180
Tru1I TTAA 3 cut(s) 311, 477, 707
Tru9I TTAA 3 cut(s) 311, 477, 707
TscAI CASTG 5 cut(s) 289, 472, 530, 793, 1098
TseI GCWGC 1 cut(s) 1116
TspDTI ATGAA 2 cut(s) 604, 613
TspMI CCCGGG 2 cut(s) 329, 1174
TspRI CASTG 5 cut(s) 289, 472, 530, 793, 1098
Van91I CCANNNNNTGG 2 cut(s) 578, 1093
VneI GTGCAC 1 cut(s) 270
VpaK11BI GGWCC 3 cut(s) 143, 188, 1013
XapI RAATTY 3 cut(s) 479, 835, 918
XceI RCATGY 1 cut(s) 495
XhoI CTCGAG 1 cut(s) 1210
XmaI CCCGGG 2 cut(s) 329, 1174
XspI CTAG 3 cut(s) 134, 342, 998
Zsp2I ATGCAT 2 cut(s) 154, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.