Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007585

Physical Location & Seq

Genomic Coordinates Forward (+)

13315186 .. 13317400

Gene Structure 2215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1068100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAACAGGAAAAAGCGCCAAGTTTGCGATGCTCCCTCGGACGACACAGCCGCGGCGGCCCCTCCTCCTCCTGAAAAAGAAAGGCTATACCTAGTGTGGCAGGGTAACAATAAATTTTTGTGCAGTGGAAGAATAGTGTTTGGTCATGACGCTGCATCACTGTTTCTAACAAGCTTTTTGATTGGATGTCCTGCACTAACATTCTGCATAAGAATGCTTGTAAAGATGAGACCACAAGATGGACATTATGATTATTCCGTAATAGCTGGGGGAATAATCCTCACTGTTTTGGATTTTACCTTTCTGTATTTGACTTCCGGCAGAGATCCTGGTATAGTTCCGAGGAACGCACGACCACAAGAATCAGACGAGACATATGACGGTTCTACCCCTTCAATGGAGTGGGTCAACAACAAAGCCTCCAGTTTGAGAATACCTCGAATAAAGGATGTAACGGTCAATGGCCACACAGTGAAGGTCAAATTTTGTGACACCTTCGTTGTATCGTCCACCACGTGCCTCTCATTGTTCCATCTGCAACAACTTGGCAATCTGTGGAGGGTCATGGCGCGAGACATCGTATCAGTTATTCTTATAGTGTACTGCTTCGTAGCAGTCTGGTTTGTTGGTGGCCTTACAGTTTTCCATATCTATTTAATTTGCACAAACCAGAACGAAAACCCCTATACAAAAAGACTACCGGAAAACCTGAAAGAAGTGTTCTGCTCAAGGATTCCTCCCTCGATGGTGAACTTCAGAGAATGGGTTTTGGTTAAGGACATCGAAGTCGACATGGGAAGGGCATCCATCACTTCAGAAAGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

276

Amino Acids

31.01

Weight (kDa)

8.34

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40990 AT3G56920 AT5G05070
fragaria_vesca	FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200
malus_domestica	MD00G1068100.v1.1 MD00G1118200.v1.1
prunus_persica	Prupe.7G020700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494561
rosa_laevigata	RLG00000022669
rosa_multiflora	Rmu_sc0001610.1_g000001
rosa_rugosa	Rorug03G0265800 Rorug03G0265900
rosa_samantha	Rh3AG315900 Rh3BG351400 Rh3CG348000 Rh3DG350600
rosa_wichuraiana	Rw3G027580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	785
AccB7I	CCANNNNNTGG	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	789
AccII	CGCG	2 cut(s)	53, 571
AciI	CCGC	3 cut(s)	51, 53, 56
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	2 cut(s)	113, 482
AcuI	CTGAAG	2 cut(s)	739, 798
AcvI	CACGTG	1 cut(s)	516
AdeI	CACNNNGTG	2 cut(s)	472, 516
AfaI	GTAC	1 cut(s)	602
AfiI	CCNNNNNNNGG	2 cut(s)	239, 397
AgsI	TTSAA	1 cut(s)	396
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	2 cut(s)	174, 266
AluI	AGCT	2 cut(s)	174, 266
Alw26I	GTCTC	3 cut(s)	223, 365, 567
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	3 cut(s)	57, 463, 631
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	2 cut(s)	113, 482
AspLEI	GCGC	2 cut(s)	18, 571
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	760
BalI	TGGCCA	1 cut(s)	465
BbrPI	CACGTG	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	4 cut(s)	233, 540, 739, 815
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	3 cut(s)	223, 365, 567
BfaI	CTAG	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	19
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	4 cut(s)	51, 54, 57, 153
BlsI	GCNGC	4 cut(s)	52, 55, 58, 154
Bme1390I	CCNGG	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	3 cut(s)	19, 164, 812
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BpmI	CTGGAG	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	712
BsaAI	YACGTR	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	3 cut(s)	36, 51, 341
BsaWI	WCCGGW	1 cut(s)	700
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 397
Bse1I	ACTGG	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	36, 51, 341
BseGI	GGATG	3 cut(s)	191, 454, 803
BseLI	CCNNNNNNNGG	2 cut(s)	239, 397
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	2 cut(s)	54, 57
BseXI	GCAGC	1 cut(s)	139
BseYI	CCCAGC	1 cut(s)	266
BsgI	GTGCAG	2 cut(s)	142, 177
Bsh1236I	CGCG	2 cut(s)	53, 571
BshFI	GGCC	3 cut(s)	59, 465, 633
BsiSI	CCGG	2 cut(s)	318, 701
BslI	CCNNNNNNNGG	2 cut(s)	239, 397
BsmAI	GTCTC	3 cut(s)	223, 365, 567
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	3 cut(s)	59, 465, 633
Bso31I	GGTCTC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	3 cut(s)	51, 53, 56
BspANI	GGCC	3 cut(s)	59, 465, 633
BspFNI	CGCG	2 cut(s)	53, 571
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	3 cut(s)	36, 51, 341
BssMI	GATC	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	6 cut(s)	162, 286, 383, 457, 472, 640
BstBAI	YACGTR	1 cut(s)	516
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	191, 454, 803
BstFNI	CGCG	2 cut(s)	53, 571
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	2 cut(s)	18, 571
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	3 cut(s)	223, 365, 567
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 56
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstUI	CGCG	2 cut(s)	53, 571
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	3 cut(s)	59, 465, 633
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	191, 454, 803
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	4 cut(s)	130, 158, 282, 477
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	2 cut(s)	18, 571
Cfr13I	GGNCC	1 cut(s)	58
Cfr42I	CCGCGG	1 cut(s)	54
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	601
CviAII	CATG	3 cut(s)	146, 565, 793
CviJI	RGCY	8 cut(s)	50, 59, 85, 174, 266, 419, 465, 633
CviKI_1	RGCY	8 cut(s)	50, 59, 85, 174, 266, 419, 465, 633
CviQI	GTAC	1 cut(s)	601
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DraIII	CACNNNGTG	2 cut(s)	472, 516
DrdI	GACNNNNNNGTC	1 cut(s)	785
DseDI	GACNNNNNNGTC	1 cut(s)	785
EaeI	YGGCCR	1 cut(s)	463
Eco31I	GGTCTC	1 cut(s)	223
Eco57I	CTGAAG	2 cut(s)	739, 798
Eco72I	CACGTG	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	328
FaeI	CATG	3 cut(s)	149, 568, 796
FatI	CATG	3 cut(s)	145, 564, 792
FauNDI	CATATG	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	4 cut(s)	51, 54, 57, 153
FokI	GGATG	3 cut(s)	198, 461, 790
Fsp4HI	GCNGC	4 cut(s)	51, 54, 57, 153
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	2 cut(s)	17, 570
GluI	GCNGC	4 cut(s)	51, 54, 57, 153
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	406
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	3 cut(s)	59, 465, 633
HapII	CCGG	2 cut(s)	318, 701
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	2 cut(s)	18, 571
Hin1II	CATG	3 cut(s)	149, 568, 796
Hin6I	GCGC	2 cut(s)	16, 569
HinP1I	GCGC	2 cut(s)	16, 569
HincII	GTYRAC	2 cut(s)	409, 790
HindII	GTYRAC	2 cut(s)	409, 790
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	2 cut(s)	362, 733
HpaII	CCGG	2 cut(s)	318, 701
HphI	GGTGA	1 cut(s)	760
Hpy166II	GTNNAC	5 cut(s)	409, 510, 601, 751, 790
Hpy188I	TCNGA	5 cut(s)	40, 342, 367, 758, 817
Hpy188III	TCNNGA	2 cut(s)	71, 146
Hpy8I	GTNNAC	5 cut(s)	409, 510, 601, 751, 790
HpyAV	CCTTC	4 cut(s)	402, 469, 505, 792
HpyCH4III	ACNGT	6 cut(s)	162, 286, 383, 457, 472, 640
HpyCH4IV	ACGT	1 cut(s)	515
HpyCH4V	TGCA	6 cut(s)	123, 155, 194, 207, 538, 663
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 56
HpySE526I	ACGT	1 cut(s)	515
Hsp92II	CATG	3 cut(s)	149, 568, 796
HspAI	GCGC	2 cut(s)	16, 569
KspI	CCGCGG	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	3 cut(s)	19, 164, 812
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	515
MaeIII	GTNAC	3 cut(s)	104, 451, 488
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	1 cut(s)	141
MflI	RGATCY	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	465
MluCI	AATT	3 cut(s)	113, 482, 657
MluNI	TGGCCA	1 cut(s)	465
Mox20I	TGGCCA	1 cut(s)	465
MscI	TGGCCA	1 cut(s)	465
MseI	TTAA	2 cut(s)	656, 774
MslI	CAYNNNNRTG	1 cut(s)	212
Msp20I	TGGCCA	1 cut(s)	465
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	318, 701
MspR9I	CCNGG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	2 cut(s)	53, 571
MwoI	GCNNNNNNNGC	2 cut(s)	24, 56
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	149, 568, 796
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	488
PagI	TCATGA	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	1 cut(s)	512
PctI	GAATGC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	362, 733
PflMI	CCANNNNNTGG	1 cut(s)	239
PkrI	GCNGC	4 cut(s)	52, 55, 58, 154
PmaCI	CACGTG	1 cut(s)	516
PmlI	CACGTG	1 cut(s)	516
Ppu21I	YACGTR	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	328
PspCI	CACGTG	1 cut(s)	516
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	212
SacII	CCGCGG	1 cut(s)	54
SalI	GTCGAC	1 cut(s)	788
SaqAI	TTAA	2 cut(s)	656, 774
SatI	GCNGC	4 cut(s)	51, 54, 57, 153
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	330
SetI	ASST	9 cut(s)	93, 176, 268, 302, 439, 480, 497, 518, 711
SfaNI	GCATC	3 cut(s)	19, 164, 812
Sfr303I	CCGCGG	1 cut(s)	54
SgrBI	CCGCGG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	727
SmoI	CTYRAG	1 cut(s)	727
Sse9I	AATT	3 cut(s)	113, 482, 657
SsiI	CCGC	3 cut(s)	51, 53, 56
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	6 cut(s)	162, 286, 383, 457, 472, 640
TaiI	ACGT	1 cut(s)	518
TaqI	TCGA	4 cut(s)	439, 743, 783, 789
TasI	AATT	3 cut(s)	113, 482, 657
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	3 cut(s)	53, 56, 59
TfiI	GAWTC	2 cut(s)	362, 733
Tru1I	TTAA	2 cut(s)	656, 774
Tru9I	TTAA	2 cut(s)	656, 774
TscAI	CASTG	4 cut(s)	130, 165, 289, 477
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	4 cut(s)	130, 165, 289, 477
Van91I	CCANNNNNTGG	1 cut(s)	239
XapI	RAATTY	2 cut(s)	113, 482
XmiI	GTMKAC	1 cut(s)	789
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.