Rw3G027580

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0007585
Physical Location & Seq
Reverse (-)
39425698 .. 39430533
4836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G027580.1

Sequence Viewer

Length: 1278 bp
ATGTTGGGCAGGAAAAAGAGCCAAGTCTGTGATTCTTCCTCCTCCATTGATGACCTCCCTAAGTCCAACCAAGAAAGGCTCTACCGAGTCTGGAAGGGTAACAATAAATTCTTATGTGGCGGAAGATTAGTGTTTGGTCACGATGGCGCATCACTGTATCTAACTAGCTTTTTGATCGGATGTCCCGCACTCACATTCTGCATAAGAATGCTTATTACCATCAAAGGACATGAAACATGTTATAGCTATCCTGTATTCACTGCAGGCCTGATTCTCACTGTTTTGGATTTTACTTTTCTCTTCCTCACGTCTGGTAGAGATCCTGGTATAATTCCGAGGAATTCAACATCACTTGAATCAGATGAGGCTTCCGATACCTTTACTCCATCAATGGAGTGGGTCAATAACAAAGGCTCTAGTATGAAAATTCCCCGAATTAAAGATGTCCCGGTCAATGGCCATACAGTGAAGGTCAAGTTTTGTGATACCTGTTTGTTATATCGCCCACCACGCGCCTCTCATTGTTCCATCTGCAACAACTGTGTTCAGAAGTTTGATCACCACTGTCCATGGGTTGGTCAGTGTATTGGATTACGTAACTATCCATTTTTTATCTTGTTTATTTCATCATCAACCTTGCTTTGCATATATGTCTTTGTGTTTTCCTGGATCAACCTTCTTCAAAAAGGGGGCAATCTATGGAGGGCCATGTCACATGATGTCGTATCAGTTATTCTGATAGTATATTGCTTCATAGCTGTCTGGTTTGTTGGAGGGCTTACAGTTTTCCATGTCTATCTAATCTGCACCAACCAGACAACATATGAGAACTTTCGTTACCGCTATGATAAGAATGAAAACCCGTACACTAAGGGGATACTGGGAAACTTAAAAGAAGTGTTCTGCTCCAGGATTCCACCATCAATGGTAAATTTCCGAGCGTGGGTTCTAAAAGATGATGATACTGCAATGGGGTCCATCGCTTCAGAGAGTGAAAGAGGCTTCATCAGTTCCAAGGAGAAATTCGACATAGAAATGGGGAACAAGTTTACCAAGGATGGTAATATGATGGTTCCAAGTATATTGCAGAAATTGGACTACACTGGCATTGATGATAACATGAAGAAGAAGAATTTGGATACTAGTGGTTTCAATGATGATTTAAAAAGGAAGGCATCAGATCAACCGTTTCTCTTTCCTATTGGTCAAGAAATAAAAAATTCAAAGGGGGGTTCTGCAACTCGAGTTAATTCTGTTAGTGACAAGAGGACACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

425

Amino Acids

48.06

Weight (kDa)

8.88

Isoelectric Point (pI)

27.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 158 - 279 4.4e-37 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 575
AccII CGCG 1 cut(s) 513
AciI CCGC 3 cut(s) 120, 186, 841
AclWI GGATC 2 cut(s) 314, 677
AcoI YGGCCR 1 cut(s) 457
AcsI RAATTY 7 cut(s) 107, 340, 426, 931, 1022, 1132, 1219
AcuI CTGAAG 1 cut(s) 969
AfaI GTAC 1 cut(s) 866
AfiI CCNNNNNNNGG 3 cut(s) 455, 575, 943
AflIII ACRYGT 1 cut(s) 236
AgsI TTSAA 5 cut(s) 345, 356, 683, 1153, 1224
AhlI ACTAGT 1 cut(s) 1142
AjiI CACGTC 1 cut(s) 309
AjnI CCWGG 3 cut(s) 322, 665, 908
AjuI GAANNNNNNNTTGG 4 cut(s) 1007, 1039, 1118, 1150
AluBI AGCT 3 cut(s) 168, 246, 758
AluI AGCT 3 cut(s) 168, 246, 758
AlwI GGATC 2 cut(s) 314, 677
Ama87I CYCGRG 1 cut(s) 1242
AoxI GGCC 3 cut(s) 265, 457, 705
ApoI RAATTY 7 cut(s) 107, 340, 426, 931, 1022, 1132, 1219
AspLEI GCGC 2 cut(s) 149, 515
AspS9I GGNCC 2 cut(s) 705, 975
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 1 cut(s) 551
AvaI CYCGRG 1 cut(s) 1242
AvaII GGWCC 1 cut(s) 975
BalI TGGCCA 1 cut(s) 459
BccI CCATC 8 cut(s) 137, 227, 394, 536, 928, 986, 1052, 1063
BciT130I CCWGG 3 cut(s) 324, 667, 910
BciVI GTATCC 2 cut(s) 870, 1132
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 1 cut(s) 449
BcuI ACTAGT 1 cut(s) 1142
BfaI CTAG 3 cut(s) 165, 417, 1143
BfmI CTRYAG 1 cut(s) 261
BfuI GTATCC 2 cut(s) 870, 1132
Bme1390I CCNGG 4 cut(s) 324, 449, 667, 910
Bme18I GGWCC 1 cut(s) 975
BmeT110I CYCGRG 1 cut(s) 1242
BmgBI CACGTC 1 cut(s) 309
BmgT120I GGNCC 2 cut(s) 705, 975
BmiI GGNNCC 2 cut(s) 976, 1074
BmrFI CCNGG 4 cut(s) 324, 449, 667, 910
BmrI ACTGGG 1 cut(s) 890
BmsI GCATC 2 cut(s) 158, 1184
BmuI ACTGGG 1 cut(s) 890
BpmI CTGGAG 1 cut(s) 892
BpuMI CCSGG 1 cut(s) 449
BsaAI YACGTR 1 cut(s) 596
BsaJI CCNNGG 4 cut(s) 335, 569, 1014, 1053
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bsc4I CCNNNNNNNGG 3 cut(s) 455, 575, 943
Bse1I ACTGG 2 cut(s) 885, 1108
Bse3DI GCAATG 1 cut(s) 975
BseBI CCWGG 3 cut(s) 324, 667, 910
BseDI CCNNGG 4 cut(s) 335, 569, 1014, 1053
BseGI GGATG 2 cut(s) 185, 1063
BseLI CCNNNNNNNGG 3 cut(s) 455, 575, 943
BseMI GCAATG 1 cut(s) 975
BseNI ACTGG 2 cut(s) 885, 1108
BseRI GAGGAG 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 790
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 3 cut(s) 267, 459, 707
BsiHKCI CYCGRG 1 cut(s) 1242
BsiSI CCGG 1 cut(s) 449
BslFI GGGAC 2 cut(s) 168, 431
BslI CCNNNNNNNGG 3 cut(s) 455, 575, 943
BsmFI GGGAC 2 cut(s) 168, 431
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 3 cut(s) 267, 459, 707
BsoBI CYCGRG 1 cut(s) 1242
Bsp143I GATC 5 cut(s) 174, 319, 556, 669, 1180
Bsp19I CCATGG 1 cut(s) 569
BspACI CCGC 3 cut(s) 120, 186, 841
BspANI GGCC 3 cut(s) 267, 459, 707
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 976, 1074
BspMAI CTGCAG 1 cut(s) 265
BspPI GGATC 2 cut(s) 314, 677
BsrDI GCAATG 1 cut(s) 975
BsrI ACTGG 2 cut(s) 885, 1108
BssECI CCNNGG 4 cut(s) 335, 569, 1014, 1053
BssMI GATC 5 cut(s) 174, 319, 556, 669, 1180
BssT1I CCWWGG 3 cut(s) 569, 1014, 1053
Bst2UI CCWGG 3 cut(s) 324, 667, 910
Bst4CI ACNGT 8 cut(s) 156, 280, 466, 542, 566, 784, 1188, 1275
Bst6I CTCTTC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 596
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 60, 870
BstDSI CCRYGG 1 cut(s) 569
BstF5I GGATG 2 cut(s) 185, 1063
BstFNI CGCG 1 cut(s) 513
BstHHI GCGC 2 cut(s) 149, 515
BstKTI GATC 5 cut(s) 177, 322, 559, 672, 1183
BstMBI GATC 5 cut(s) 174, 319, 556, 669, 1180
BstMWI GCNNNNNNNGC 1 cut(s) 510
BstNI CCWGG 3 cut(s) 324, 667, 910
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 4 cut(s) 322, 447, 665, 908
BstSFI CTRYAG 1 cut(s) 261
BstSNI TACGTA 1 cut(s) 596
BstUI CGCG 1 cut(s) 513
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuI GTATCC 2 cut(s) 870, 1132
BsuRI GGCC 3 cut(s) 267, 459, 707
BtgI CCRYGG 1 cut(s) 569
BtgZI GCGATG 1 cut(s) 964
BtrI CACGTC 1 cut(s) 309
BtsCI GGATG 2 cut(s) 185, 1063
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 7 cut(s) 152, 258, 276, 471, 562, 587, 1101
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 2 cut(s) 149, 515
Cfr13I GGNCC 2 cut(s) 705, 975
Csp6I GTAC 1 cut(s) 865
CviAII CATG 7 cut(s) 230, 237, 570, 709, 716, 791, 1120
CviQI GTAC 1 cut(s) 865
DdeI CTNAG 2 cut(s) 60, 870
DpnI GATC 5 cut(s) 176, 321, 558, 671, 1182
DpnII GATC 5 cut(s) 174, 319, 556, 669, 1180
DraI TTTAAA 1 cut(s) 1164
EaeI YGGCCR 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
EciI GGCGGA 1 cut(s) 135
Eco105I TACGTA 1 cut(s) 596
Eco130I CCWWGG 3 cut(s) 569, 1014, 1053
Eco147I AGGCCT 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 975
Eco57I CTGAAG 1 cut(s) 969
Eco88I CYCGRG 1 cut(s) 1242
EcoRI GAATTC 1 cut(s) 340
EcoRII CCWGG 3 cut(s) 322, 665, 908
EcoT14I CCWWGG 3 cut(s) 569, 1014, 1053
ErhI CCWWGG 3 cut(s) 569, 1014, 1053
FaeI CATG 7 cut(s) 233, 240, 573, 712, 719, 794, 1123
FaqI GGGAC 2 cut(s) 168, 431
FatI CATG 7 cut(s) 229, 236, 569, 708, 715, 790, 1119
FauI CCCGC 1 cut(s) 193
FauNDI CATATG 1 cut(s) 823
FbaI TGATCA 1 cut(s) 556
FokI GGATG 2 cut(s) 192, 1070
FspBI CTAG 3 cut(s) 165, 417, 1143
GlaI GCGC 2 cut(s) 148, 514
GsuI CTGGAG 1 cut(s) 892
HaeIII GGCC 3 cut(s) 267, 459, 707
HapII CCGG 1 cut(s) 449
HhaI GCGC 2 cut(s) 149, 515
Hin1II CATG 7 cut(s) 233, 240, 573, 712, 719, 794, 1123
Hin6I GCGC 2 cut(s) 147, 513
HinP1I GCGC 2 cut(s) 147, 513
HinfI GANTC 5 cut(s) 32, 87, 271, 356, 913
HpaII CCGG 1 cut(s) 449
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 2 cut(s) 867, 1050
Hpy188I TCNGA 9 cut(s) 179, 336, 361, 373, 549, 738, 938, 988, 1180
Hpy188III TCNNGA 3 cut(s) 91, 140, 1208
Hpy8I GTNNAC 2 cut(s) 867, 1050
HpyAV CCTTC 4 cut(s) 88, 463, 686, 1165
HpyCH4III ACNGT 8 cut(s) 156, 280, 466, 542, 566, 784, 1188, 1275
HpyCH4IV ACGT 2 cut(s) 308, 595
HpyCH4V TGCA 8 cut(s) 201, 263, 534, 645, 807, 968, 1087, 1238
HpyF10VI GCNNNNNNNGC 1 cut(s) 510
HpyF3I CTNAG 2 cut(s) 60, 870
HpySE526I ACGT 2 cut(s) 308, 595
Hsp92II CATG 7 cut(s) 233, 240, 573, 712, 719, 794, 1123
HspAI GCGC 2 cut(s) 147, 513
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 5 cut(s) 174, 319, 556, 669, 1180
LmnI GCTCC 1 cut(s) 911
LweI GCATC 2 cut(s) 158, 1184
MaeI CTAG 3 cut(s) 165, 417, 1143
MaeII ACGT 2 cut(s) 308, 595
MaeIII GTNAC 6 cut(s) 98, 137, 596, 711, 836, 1259
MalI GATC 5 cut(s) 176, 321, 558, 671, 1182
MboI GATC 5 cut(s) 174, 319, 556, 669, 1180
MboII GAAGA 7 cut(s) 27, 135, 292, 671, 1135, 1138, 1141
MflI RGATCY 1 cut(s) 319
MlsI TGGCCA 1 cut(s) 459
MluNI TGGCCA 1 cut(s) 459
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 2 cut(s) 90, 751
Mox20I TGGCCA 1 cut(s) 459
MscI TGGCCA 1 cut(s) 459
MseI TTAA 4 cut(s) 438, 890, 1163, 1248
MslI CAYNNNNRTG 2 cut(s) 206, 1034
Msp20I TGGCCA 1 cut(s) 459
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 4 cut(s) 324, 449, 667, 910
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 3 cut(s) 324, 667, 910
MvnI CGCG 1 cut(s) 513
MwoI GCNNNNNNNGC 1 cut(s) 510
NciI CCSGG 1 cut(s) 449
NcoI CCATGG 1 cut(s) 569
NdeI CATATG 1 cut(s) 823
NdeII GATC 5 cut(s) 174, 319, 556, 669, 1180
NlaIII CATG 7 cut(s) 233, 240, 573, 712, 719, 794, 1123
NlaIV GGNNCC 2 cut(s) 976, 1074
NmuCI GTSAC 3 cut(s) 137, 711, 1259
NspI RCATGY 1 cut(s) 240
PaeR7I CTCGAG 1 cut(s) 1242
PceI AGGCCT 1 cut(s) 267
PciI ACATGT 1 cut(s) 236
PctI GAATGC 1 cut(s) 213
PfeI GAWTC 4 cut(s) 32, 271, 356, 913
PflMI CCANNNNNTGG 1 cut(s) 575
PfoI TCCNGGA 2 cut(s) 665, 908
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Ppu21I YACGTR 1 cut(s) 596
PscI ACATGT 1 cut(s) 236
Psp6I CCWGG 3 cut(s) 322, 665, 908
PspGI CCWGG 3 cut(s) 322, 665, 908
PspN4I GGNNCC 2 cut(s) 976, 1074
PspPI GGNCC 2 cut(s) 705, 975
PspXI VCTCGAGB 1 cut(s) 1242
PsrI GAACNNNNNNTAC 2 cut(s) 821, 853
PstI CTGCAG 1 cut(s) 265
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 866
RsaNI GTAC 1 cut(s) 865
RseI CAYNNNNRTG 2 cut(s) 206, 1034
SaqAI TTAA 4 cut(s) 438, 890, 1163, 1248
Sau3AI GATC 5 cut(s) 174, 319, 556, 669, 1180
Sau96I GGNCC 2 cut(s) 705, 975
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 4 cut(s) 324, 449, 667, 910
SfaNI GCATC 2 cut(s) 158, 1184
SfcI CTRYAG 1 cut(s) 261
Sfr274I CTCGAG 1 cut(s) 1242
SinI GGWCC 1 cut(s) 975
SlaI CTCGAG 1 cut(s) 1242
SmiMI CAYNNNNRTG 2 cut(s) 206, 1034
SmlI CTYRAG 1 cut(s) 1242
SmoI CTYRAG 1 cut(s) 1242
SnaBI TACGTA 1 cut(s) 596
SpeI ACTAGT 1 cut(s) 1142
SseBI AGGCCT 1 cut(s) 267
SsiI CCGC 3 cut(s) 120, 186, 841
SspMI CTAG 3 cut(s) 165, 417, 1143
StuI AGGCCT 1 cut(s) 267
StyD4I CCNGG 4 cut(s) 322, 447, 665, 908
StyI CCWWGG 3 cut(s) 569, 1014, 1053
TaaI ACNGT 8 cut(s) 156, 280, 466, 542, 566, 784, 1188, 1275
TaiI ACGT 2 cut(s) 311, 598
TaqI TCGA 2 cut(s) 1026, 1243
TfiI GAWTC 4 cut(s) 32, 271, 356, 913
Tru1I TTAA 4 cut(s) 438, 890, 1163, 1248
Tru9I TTAA 4 cut(s) 438, 890, 1163, 1248
TscAI CASTG 7 cut(s) 159, 265, 283, 471, 569, 587, 1108
TseFI GTSAC 3 cut(s) 137, 711, 1259
Tsp45I GTSAC 3 cut(s) 137, 711, 1259
TspDTI ATGAA 7 cut(s) 246, 437, 615, 742, 870, 994, 1136
TspRI CASTG 7 cut(s) 159, 265, 283, 471, 569, 587, 1108
Van91I CCANNNNNTGG 1 cut(s) 575
VpaK11BI GGWCC 1 cut(s) 975
XapI RAATTY 7 cut(s) 107, 340, 426, 931, 1022, 1132, 1219
XceI RCATGY 1 cut(s) 240
XcmI CCANNNNNNNNNTGG 1 cut(s) 393
XhoI CTCGAG 1 cut(s) 1242
XspI CTAG 3 cut(s) 165, 417, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.