Rorug03G0265800

Belongs to the DHHC palmitoyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
25950212 .. 26044017
93806 bp
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UTR
Exon/CDS
Intron
Rorug03G0265800.1

Sequence Viewer

Length: 522 bp
ATGCTGTTGATCTCCAATCTTCAACACAAAAATCTTGTTAGGATCATGGGCTGCTGCGTTAAAGAGGATGAGAAGTTGCTGGTTTATGAGTTCATGCCGAACAAAAGCTTGGACACGTTTCTATTCAATCCAATGAGGAGAGGAGAGCTTGATTGGGATAGACGCTCTAATATTATTCAGGGTATTGCTAGAGGGCTTCTTTATCTCCATCATGATTCCTATGTGAAGGTAATACATAGAGATCTGAAAGTTAGCAACATTCTCTTGGATGAAAACATGAACCCAAAAATATCAGATTTTGGATTGGCACGAATAGTTGAAGGAACACATTGTCTAGAAAATACTGAAAAGGTTATGGGAACACGTGGCTATATGTCTCTTGAGTATGCCATGGGTGGGATATTTTCTGAAAAATCTGATGTCTACAGCTTCGAGGTATTGGTATTGGAAATTATTAGCAGCAAGAAGAATAGCAGCTTTTTATTATATGACCAACAGCTAAGCTTCCTAGCCTATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

19.99

Weight (kDa)

6.2

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 3 - 156 7.3e-35 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 3 - 155 1.1e-31 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 423
AclWI GGATC 1 cut(s) 50
AcvI CACGTG 1 cut(s) 365
AfiI CCNNNNNNNGG 1 cut(s) 396
AflIII ACRYGT 2 cut(s) 114, 362
AgsI TTSAA 3 cut(s) 23, 127, 320
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 6 cut(s) 108, 148, 429, 477, 499, 504
AluI AGCT 6 cut(s) 108, 148, 429, 477, 499, 504
Alw26I GTCTC 1 cut(s) 381
AlwI GGATC 1 cut(s) 50
ApeKI GCWGC 4 cut(s) 51, 54, 459, 474
BbrPI CACGTG 1 cut(s) 365
BbvI GCAGC 4 cut(s) 38, 41, 471, 486
BccI CCATC 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 3 cut(s) 189, 335, 509
BfmI CTRYAG 1 cut(s) 424
BglII AGATCT 1 cut(s) 241
BisI GCNGC 4 cut(s) 52, 55, 460, 475
BlpI GCTNAGC 1 cut(s) 500
BlsI GCNGC 4 cut(s) 53, 56, 461, 476
Bpu1102I GCTNAGC 1 cut(s) 500
BpuEI CTTGAG 1 cut(s) 401
BsaAI YACGTR 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 2 cut(s) 73, 274
BseLI CCNNNNNNNGG 1 cut(s) 396
BseRI GAGGAG 2 cut(s) 151, 156
BseXI GCAGC 4 cut(s) 38, 41, 471, 486
BslI CCNNNNNNNGG 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 381
Bsp143I GATC 3 cut(s) 9, 42, 241
Bsp1720I GCTNAGC 1 cut(s) 500
Bsp19I CCATGG 1 cut(s) 390
BspHI TCATGA 1 cut(s) 211
BspPI GGATC 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 3 cut(s) 9, 42, 241
BssT1I CCWWGG 1 cut(s) 390
BstBAI YACGTR 1 cut(s) 365
BstDEI CTNAG 2 cut(s) 500, 519
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 73, 274
BstKTI GATC 3 cut(s) 12, 45, 244
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 3 cut(s) 9, 42, 241
BstSFI CTRYAG 1 cut(s) 424
BstV1I GCAGC 4 cut(s) 38, 41, 471, 486
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 73, 274
CciI TCATGA 1 cut(s) 211
CseI GACGC 1 cut(s) 171
CviAII CATG 5 cut(s) 46, 94, 212, 277, 391
DdeI CTNAG 2 cut(s) 500, 519
DpnI GATC 3 cut(s) 11, 44, 243
DpnII GATC 3 cut(s) 9, 42, 241
Eco130I CCWWGG 1 cut(s) 390
Eco72I CACGTG 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 5 cut(s) 49, 97, 215, 280, 394
FatI CATG 5 cut(s) 45, 93, 211, 276, 390
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 4 cut(s) 52, 55, 460, 475
FokI GGATG 2 cut(s) 80, 281
Fsp4HI GCNGC 4 cut(s) 52, 55, 460, 475
FspBI CTAG 3 cut(s) 189, 335, 509
GluI GCNGC 4 cut(s) 52, 55, 460, 475
HgaI GACGC 1 cut(s) 171
Hin1II CATG 5 cut(s) 49, 97, 215, 280, 394
HindIII AAGCTT 2 cut(s) 106, 502
HinfI GANTC 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 4 cut(s) 246, 295, 409, 418
Hpy188III TCNNGA 3 cut(s) 212, 335, 380
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 2 cut(s) 220, 314
HpyCH4IV ACGT 2 cut(s) 116, 364
HpyF3I CTNAG 2 cut(s) 500, 519
HpySE526I ACGT 2 cut(s) 116, 364
Hsp92II CATG 5 cut(s) 49, 97, 215, 280, 394
Kzo9I GATC 3 cut(s) 9, 42, 241
LpnPI CCDG 2 cut(s) 65, 164
Lsp1109I GCAGC 4 cut(s) 38, 41, 471, 486
MaeI CTAG 3 cut(s) 189, 335, 509
MaeII ACGT 2 cut(s) 116, 364
MalI GATC 3 cut(s) 11, 44, 243
MboI GATC 3 cut(s) 9, 42, 241
MboII GAAGA 2 cut(s) 11, 478
MflI RGATCY 1 cut(s) 241
MluCI AATT 1 cut(s) 450
MnlI CCTC 5 cut(s) 58, 129, 134, 185, 427
MseI TTAA 1 cut(s) 60
NcoI CCATGG 1 cut(s) 390
NdeII GATC 3 cut(s) 9, 42, 241
NlaIII CATG 5 cut(s) 49, 97, 215, 280, 394
PagI TCATGA 1 cut(s) 211
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 4 cut(s) 53, 56, 461, 476
PmaCI CACGTG 1 cut(s) 365
PmlI CACGTG 1 cut(s) 365
Ppu21I YACGTR 1 cut(s) 365
PspCI CACGTG 1 cut(s) 365
PsuI RGATCY 1 cut(s) 241
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 4 cut(s) 52, 55, 460, 475
Sau3AI GATC 3 cut(s) 9, 42, 241
SfcI CTRYAG 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 1 cut(s) 450
SspI AATATT 1 cut(s) 172
SspMI CTAG 3 cut(s) 189, 335, 509
StyI CCWWGG 1 cut(s) 390
TaiI ACGT 2 cut(s) 119, 367
TaqI TCGA 1 cut(s) 432
TasI AATT 1 cut(s) 450
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseI GCWGC 4 cut(s) 51, 54, 459, 474
TspDTI ATGAA 3 cut(s) 82, 285, 293
XbaI TCTAGA 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 3 cut(s) 189, 335, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.