Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007585

Physical Location & Seq

Genomic Coordinates Forward (+)

21070558 .. 21072878

Gene Structure 2321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTCTTCTCAGAATCTTGAACGACAAAGGATCTATCAAGTTTGGCCCGCCAAAAATAAATTTTACTGTGGGGGAAGACTAGTGTTTGGTCCAGATGCATCGTCACTTCTTTTGACCACATGTATGATAGGAGGGCCAGCTATCGCTTTCTCCATCAGGATGGCTTATTTGATAAGCCATCGTCACCCTTTCTTTCATTCTCTTACTTTGATTGGTGCAATTCTTCTCACATTCATGGCTTTCACTTTTCTCTTCTTGACATCATCGAGAGACCCCGGGATTATCCCAAGGAACAAACAAGTGTCTGAGGCAGAGATTCCTGATGTTACCACCCAATCGACAGAATGGGTGACTAGCAAATTAGGAAGTGTGAAACTACCTCGAACAAAAGATGTAATGGTGAATGGCTTCACTGTCAAAGTGAAGTTTTGCGATACCTGTCAGCTATATCGTCCTCCTCGTGCCTTTCACTGCTCAATCTGCAATAACTGTGTCCAAAGGTTTGATCATCACTGTCCTTGGGTTGGTCAGTGCATCGCCTTGCGTAACTATCCATTCTTCGTCTGTTTCTTATCATGTTCAACACTCCTCTGCATCTACGTTTTCGTCTTCTCATGGGTCAGCATGCTTAAAGTCCATGGGGAATTCTATGTTGTTCTCGCTGATGACTTAATATTAGGTGTTCTTGGTCTCTACTGCTTTGTTTCCGTTTGGTTTGTTGGTGGACTTACTGTCTTCCACTTCTACCTTATCTGCACCAACCAGACGACTTGTGAGAATTTTCGGTACCATTACGACAAGAAGGAAAACCCTTACCGAAAGGGGATCTTAGAGAACTTCAAGGAGCTATTCTTTGCAAAAATTCCACCACCTTTGATCAATTTCAGAGATTGGTCGCCAGAAGAAGAAGACGATGTGGAGGTTGGATCCATAGCCTCTGAGCTAGTCAGAGCCTTTGGTCCAAAAGACACGAAAATGAGCAGTGGAAAGTCTGATTCCGAAGCTAGAGAACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030154 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035618 GO:0040007 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0099402 GO:0120025 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

338

Amino Acids

38.67

Weight (kDa)

8.45

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	142 - 262	1.3e-32	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40990 AT3G56920 AT5G05070
fragaria_vesca	FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200
malus_domestica	MD00G1068100.v1.1 MD00G1118200.v1.1
prunus_persica	Prupe.7G020700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494561
rosa_laevigata	RLG00000022669
rosa_multiflora	Rmu_sc0001610.1_g000001
rosa_rugosa	Rorug03G0265800 Rorug03G0265900
rosa_samantha	Rh3AG315900 Rh3BG351400 Rh3CG348000 Rh3DG350600
rosa_wichuraiana	Rw3G027580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	786
AccB1I	GGYRCC	1 cut(s)	786
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	4 cut(s)	38, 833, 921, 934
AcsI	RAATTY	4 cut(s)	59, 644, 778, 861
AfaI	GTAC	1 cut(s)	788
AfiI	CCNNNNNNNGG	1 cut(s)	524
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	20, 582, 841
AhdI	GACNNNNNGTC	1 cut(s)	731
AhlI	ACTAGT	1 cut(s)	79
AluBI	AGCT	5 cut(s)	140, 445, 847, 943, 1004
AluI	AGCT	5 cut(s)	140, 445, 847, 943, 1004
Alw26I	GTCTC	2 cut(s)	264, 695
AlwI	GGATC	4 cut(s)	38, 833, 921, 934
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	44, 134
ApoI	RAATTY	4 cut(s)	59, 644, 778, 861
Asp700I	GAANNNNTTC	1 cut(s)	407
Asp718I	GGTACC	1 cut(s)	786
AspS9I	GGNCC	4 cut(s)	45, 89, 134, 959
AsuC2I	CCSGG	2 cut(s)	276, 277
AsuHPI	GGTGA	3 cut(s)	176, 361, 412
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	89, 959
BamHI	GGATCC	1 cut(s)	926
BanI	GGYRCC	1 cut(s)	786
BauI	CACGAG	1 cut(s)	459
BbsI	GAAGAC	4 cut(s)	82, 601, 727, 915
BccI	CCATC	3 cut(s)	154, 161, 186
BclI	TGATCA	2 cut(s)	505, 876
BcnI	CCSGG	2 cut(s)	276, 277
BcoDI	GTCTC	2 cut(s)	264, 695
BcuI	ACTAGT	1 cut(s)	79
BfaI	CTAG	4 cut(s)	80, 354, 944, 1005
Bme1390I	CCNGG	2 cut(s)	276, 277
Bme18I	GGWCC	2 cut(s)	89, 959
BmeRI	GACNNNNNGTC	1 cut(s)	731
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	4 cut(s)	45, 89, 134, 959
BmiI	GGNNCC	2 cut(s)	788, 928
BmrFI	CCNGG	2 cut(s)	276, 277
BmsI	GCATC	4 cut(s)	85, 107, 543, 603
BpiI	GAAGAC	4 cut(s)	82, 601, 727, 915
BpuMI	CCSGG	2 cut(s)	276, 277
BsaI	GGTCTC	2 cut(s)	264, 695
BsaJI	CCNNGG	5 cut(s)	274, 275, 287, 518, 637
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
BseDI	CCNNGG	5 cut(s)	274, 275, 287, 518, 637
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	524
BseMII	CTCAG	3 cut(s)	23, 297, 930
BseRI	GAGGAG	2 cut(s)	447, 578
BsgI	GTGCAG	1 cut(s)	739
BshFI	GGCC	2 cut(s)	46, 136
BshNI	GGYRCC	1 cut(s)	786
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	524
BsmAI	GTCTC	2 cut(s)	264, 695
BsnI	GGCC	2 cut(s)	46, 136
Bso31I	GGTCTC	2 cut(s)	264, 695
BsoBI	CYCGRG	1 cut(s)	275
Bsp143I	GATC	5 cut(s)	30, 505, 825, 876, 926
Bsp19I	CCATGG	1 cut(s)	637
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	46, 136
BspCNI	CTCAG	3 cut(s)	22, 298, 931
BspLI	GGNNCC	2 cut(s)	788, 928
BspPI	GGATC	4 cut(s)	38, 833, 921, 934
BspT107I	GGYRCC	1 cut(s)	786
BspTNI	GGTCTC	2 cut(s)	264, 695
BssECI	CCNNGG	5 cut(s)	274, 275, 287, 518, 637
BssMI	GATC	5 cut(s)	30, 505, 825, 876, 926
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	3 cut(s)	287, 518, 637
Bst2BI	CACGAG	1 cut(s)	459
Bst4CI	ACNGT	6 cut(s)	68, 415, 491, 515, 733, 1014
Bst6I	CTCTTC	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	48, 138, 626
BstDEI	CTNAG	4 cut(s)	9, 306, 829, 939
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	5 cut(s)	33, 508, 828, 879, 929
BstMAI	GTCTC	2 cut(s)	264, 695
BstMBI	GATC	5 cut(s)	30, 505, 825, 876, 926
BstMWI	GCNNNNNNNGC	1 cut(s)	480
BstNSI	RCATGY	2 cut(s)	123, 628
BstSCI	CCNGG	2 cut(s)	274, 275
BstV2I	GAAGAC	4 cut(s)	82, 601, 727, 915
BstX2I	RGATCY	3 cut(s)	30, 825, 926
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	3 cut(s)	30, 825, 926
BsuRI	GGCC	2 cut(s)	46, 136
BtgI	CCRYGG	1 cut(s)	637
BtgZI	GCGATG	1 cut(s)	520
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	2 cut(s)	469, 988
BtsIMutI	CAGTG	5 cut(s)	411, 469, 511, 536, 988
Cac8I	GCNNGC	3 cut(s)	48, 138, 626
Cfr13I	GGNCC	4 cut(s)	45, 89, 134, 959
Cfr9I	CCCGGG	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	787
CspCI	CAANNNNNGTGG	2 cut(s)	855, 890
CviAII	CATG	6 cut(s)	120, 235, 576, 615, 625, 638
CviQI	GTAC	1 cut(s)	787
DdeI	CTNAG	4 cut(s)	9, 306, 829, 939
DpnI	GATC	5 cut(s)	32, 507, 827, 878, 928
DpnII	GATC	5 cut(s)	30, 505, 825, 876, 926
DriI	GACNNNNNGTC	1 cut(s)	731
Eam1104I	CTCTTC	1 cut(s)	257
Eam1105I	GACNNNNNGTC	1 cut(s)	731
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	3 cut(s)	287, 518, 637
Eco31I	GGTCTC	2 cut(s)	264, 695
Eco47I	GGWCC	2 cut(s)	89, 959
Eco88I	CYCGRG	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	644
EcoT14I	CCWWGG	3 cut(s)	287, 518, 637
EcoT22I	ATGCAT	1 cut(s)	100
ErhI	CCWWGG	3 cut(s)	287, 518, 637
FaeI	CATG	6 cut(s)	123, 238, 579, 618, 628, 641
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FatI	CATG	6 cut(s)	119, 234, 575, 614, 624, 637
FauI	CCCGC	1 cut(s)	55
FbaI	TGATCA	2 cut(s)	505, 876
FokI	GGATG	1 cut(s)	172
FspBI	CTAG	4 cut(s)	80, 354, 944, 1005
HaeIII	GGCC	2 cut(s)	46, 136
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	6 cut(s)	123, 238, 579, 618, 628, 641
HinfI	GANTC	3 cut(s)	13, 316, 995
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	3 cut(s)	176, 361, 412
Hpy166II	GTNNAC	1 cut(s)	725
Hpy188I	TCNGA	7 cut(s)	12, 307, 887, 940, 950, 994, 1000
Hpy188III	TCNNGA	6 cut(s)	17, 92, 157, 256, 267, 320
Hpy8I	GTNNAC	1 cut(s)	725
HpyAV	CCTTC	1 cut(s)	796
HpyCH4III	ACNGT	6 cut(s)	68, 415, 491, 515, 733, 1014
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	7 cut(s)	98, 218, 483, 534, 594, 756, 857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	480
HpyF3I	CTNAG	4 cut(s)	9, 306, 829, 939
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	6 cut(s)	123, 238, 579, 618, 628, 641
KpnI	GGTACC	1 cut(s)	790
Ksp22I	TGATCA	2 cut(s)	505, 876
Kzo9I	GATC	5 cut(s)	30, 505, 825, 876, 926
LmnI	GCTCC	1 cut(s)	844
LpnPI	CCDG	8 cut(s)	105, 142, 150, 289, 333, 451, 776, 912
LweI	GCATC	4 cut(s)	85, 107, 543, 603
MaeI	CTAG	4 cut(s)	80, 354, 944, 1005
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	5 cut(s)	102, 182, 325, 349, 545
MalI	GATC	5 cut(s)	32, 507, 827, 878, 928
MboI	GATC	5 cut(s)	30, 505, 825, 876, 926
MboII	GAAGA	9 cut(s)	87, 215, 244, 550, 601, 727, 914, 917, 920
MflI	RGATCY	3 cut(s)	30, 825, 926
MluCI	AATT	7 cut(s)	59, 219, 359, 644, 778, 861, 880
MmeI	TCCRAC	1 cut(s)	904
MnlI	CCTC	8 cut(s)	125, 301, 390, 465, 468, 599, 913, 946
Mph1103I	ATGCAT	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	2 cut(s)	630, 671
MslI	CAYNNNNRTG	4 cut(s)	122, 158, 233, 974
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	276, 277
MwoI	GCNNNNNNNGC	1 cut(s)	480
NciI	CCSGG	2 cut(s)	276, 277
NcoI	CCATGG	1 cut(s)	637
NdeII	GATC	5 cut(s)	30, 505, 825, 876, 926
NlaIII	CATG	6 cut(s)	123, 238, 579, 618, 628, 641
NlaIV	GGNNCC	2 cut(s)	788, 928
NmuCI	GTSAC	3 cut(s)	102, 182, 349
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	2 cut(s)	123, 628
PaeI	GCATGC	1 cut(s)	628
PciI	ACATGT	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	3 cut(s)	13, 316, 995
PscI	ACATGT	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	788, 928
PspPI	GGNCC	4 cut(s)	45, 89, 134, 959
PsuI	RGATCY	3 cut(s)	30, 825, 926
RsaI	GTAC	1 cut(s)	788
RsaNI	GTAC	1 cut(s)	787
RseI	CAYNNNNRTG	4 cut(s)	122, 158, 233, 974
SaqAI	TTAA	2 cut(s)	630, 671
Sau3AI	GATC	5 cut(s)	30, 505, 825, 876, 926
Sau96I	GGNCC	4 cut(s)	45, 89, 134, 959
ScrFI	CCNGG	2 cut(s)	276, 277
SfaNI	GCATC	4 cut(s)	85, 107, 543, 603
SinI	GGWCC	2 cut(s)	89, 959
SmaI	CCCGGG	1 cut(s)	277
SmiMI	CAYNNNNRTG	4 cut(s)	122, 158, 233, 974
SpeI	ACTAGT	1 cut(s)	79
SphI	GCATGC	1 cut(s)	628
Sse9I	AATT	7 cut(s)	59, 219, 359, 644, 778, 861, 880
SsiI	CCGC	1 cut(s)	48
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	4 cut(s)	80, 354, 944, 1005
StyD4I	CCNGG	2 cut(s)	274, 275
StyI	CCWWGG	3 cut(s)	287, 518, 637
TaaI	ACNGT	6 cut(s)	68, 415, 491, 515, 733, 1014
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	3 cut(s)	266, 338, 382
TasI	AATT	7 cut(s)	59, 219, 359, 644, 778, 861, 880
TfiI	GAWTC	3 cut(s)	13, 316, 995
Tru1I	TTAA	2 cut(s)	630, 671
Tru9I	TTAA	2 cut(s)	630, 671
TscAI	CASTG	5 cut(s)	418, 476, 518, 536, 988
TseFI	GTSAC	3 cut(s)	102, 182, 349
Tsp45I	GTSAC	3 cut(s)	102, 182, 349
TspDTI	ATGAA	2 cut(s)	185, 223
TspGWI	ACGGA	1 cut(s)	697
TspMI	CCCGGG	1 cut(s)	275
TspRI	CASTG	5 cut(s)	418, 476, 518, 536, 988
VpaK11BI	GGWCC	2 cut(s)	89, 959
XapI	RAATTY	4 cut(s)	59, 644, 778, 861
XceI	RCATGY	2 cut(s)	123, 628
XmaI	CCCGGG	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	4 cut(s)	80, 354, 944, 1005
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.