Rh3AG315900

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0007585
Physical Location & Seq
Reverse (-)
42980008 .. 42988159
8152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG315900.1

Sequence Viewer

Length: 1284 bp
ATGACCATGTTGGGCAGGAAAAAGAGCCAAGTCTGTGATTCTTCCTCCTCCATTGACGACCCTCCCAAGTCCAACCAAGAAAGGCTCTACCGAGTCTGGAAGGGTAACAATAAATTCTTATGTGGTGGAAGATTAGTGTTTGGTCACGATGGCGCTTCACTGTATCTAACTAGCTTTTTGATCGGATGTCCTGCACTCACATTCTGCATAAGAATGCTTATTACCATCAAAGGAGATGACGCATGTTATAGTTATCCCGTATTCACTGCAGGCCTGATTCTCACTGTTTTGGATTTTACTTTTCTCTTCCTCACGTCTGGTAGAGATCCTGGTATAATTCCGAGGAATTCAACATCACTTGAATCAGATGAGGCTTCCGATACCTTTACCCCATCAATGGAGTGGGTCAATAACAAAGGCTCTAGTATGAAAATTCCCCGAATTAAAGATGTCCCGGTCAATGGCCATACAGTGAAGGTCAAGTTTTGTGATACCTGTTTGTTATATCGTCCACCACGCGCCTCTCATTGTTCCATATGCAACAACTGTGTTCAGAAGTTTGATCACCACTGTCCATGGGTTGGTCAGTGTATTGGATTACGTAACTATCCATTTTTCATCTTATTTATTTCATCATCAACCTTGCTCTGCATATATGTCTTTGTGTTTTCCTGGATCAACCTTCTTCAAAAAGGGGGCAATCTATGGAGGGCCATGTCACATGATGTCGTATCAGTTATTCTGATAGTATATTGCTTCATAGCTGTCTGGTTTGTTGGGGGGCTTACAGTTTTCCATGTCTATCTAATCTGCACCAACCAGACAACATATGAGAACTTTCGTTACCGCTATGATAAGAATGAAAACCCGTACACTAAGGGGATACTGGGAAACTTAAGAGAAGTGTTCTGCTCCAGGATTCCACCATCAATGGTAAATTTTCGAGCGTGGGTTCTAAAAGATGATGATACTGCAATGGGATCCATCGCTTCAGAGAGTGAAAGAGGCTTCATCAGTTCCAAGGAGAAATTCGACATAGAAATGGGGAACAAGTTTACCAAGGACGGTAATATGATGGTTCCAAGTATATTGCAGAAATTGGACTACACTGGCATTGATGATAACATGAAGAAGAAGAATTTGGATACTAGTGGTTTCAATGATGATTTAAAAAGGAAGGCATCAGATCAACCGTTTCTCTTTCCTATTGGTCAAGAAATAAAAAATTCAAAGGGGGGTTCTGCAACTCGAGTTAATTCTGTTAGTGACAAGAGGACACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

427

Amino Acids

48.24

Weight (kDa)

8.82

Isoelectric Point (pI)

28.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 160 - 281 4.5e-37 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 581
AccII CGCG 1 cut(s) 519
AciI CCGC 1 cut(s) 847
AclWI GGATC 4 cut(s) 320, 683, 975, 988
AcoI YGGCCR 1 cut(s) 463
AcsI RAATTY 7 cut(s) 113, 346, 432, 937, 1028, 1138, 1225
AcuI CTGAAG 1 cut(s) 975
AfaI GTAC 1 cut(s) 872
AfiI CCNNNNNNNGG 3 cut(s) 397, 461, 581
AflII CTTAAG 1 cut(s) 895
AgsI TTSAA 5 cut(s) 351, 362, 689, 1159, 1230
AhlI ACTAGT 1 cut(s) 1148
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 3 cut(s) 328, 671, 914
AjuI GAANNNNNNNTTGG 4 cut(s) 1013, 1045, 1124, 1156
AluBI AGCT 2 cut(s) 174, 764
AluI AGCT 2 cut(s) 174, 764
AlwI GGATC 4 cut(s) 320, 683, 975, 988
Ama87I CYCGRG 1 cut(s) 1248
AoxI GGCC 3 cut(s) 271, 463, 711
ApoI RAATTY 7 cut(s) 113, 346, 432, 937, 1028, 1138, 1225
AspLEI GCGC 2 cut(s) 155, 521
AspS9I GGNCC 1 cut(s) 711
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 557
AvaI CYCGRG 1 cut(s) 1248
BalI TGGCCA 1 cut(s) 465
BamHI GGATCC 1 cut(s) 980
BccI CCATC 6 cut(s) 143, 233, 400, 934, 992, 1069
BciT130I CCWGG 3 cut(s) 330, 673, 916
BciVI GTATCC 2 cut(s) 876, 1138
BclI TGATCA 1 cut(s) 562
BcnI CCSGG 1 cut(s) 455
BcuI ACTAGT 1 cut(s) 1148
BfaI CTAG 3 cut(s) 171, 423, 1149
BfmI CTRYAG 1 cut(s) 267
BfoI RGCGCY 1 cut(s) 156
BfrI CTTAAG 1 cut(s) 895
BfuI GTATCC 2 cut(s) 876, 1138
Bme1390I CCNGG 4 cut(s) 330, 455, 673, 916
BmeT110I CYCGRG 1 cut(s) 1248
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 711
BmiI GGNNCC 2 cut(s) 982, 1080
BmrFI CCNGG 4 cut(s) 330, 455, 673, 916
BmrI ACTGGG 1 cut(s) 896
BmsI GCATC 1 cut(s) 1190
BmuI ACTGGG 1 cut(s) 896
BpmI CTGGAG 1 cut(s) 898
BpuMI CCSGG 1 cut(s) 455
BsaAI YACGTR 1 cut(s) 602
BsaJI CCNNGG 4 cut(s) 341, 575, 1020, 1059
Bsc4I CCNNNNNNNGG 3 cut(s) 397, 461, 581
Bse1I ACTGG 2 cut(s) 891, 1114
Bse3DI GCAATG 1 cut(s) 981
BseBI CCWGG 3 cut(s) 330, 673, 916
BseDI CCNNGG 4 cut(s) 341, 575, 1020, 1059
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 3 cut(s) 397, 461, 581
BseMI GCAATG 1 cut(s) 981
BseNI ACTGG 2 cut(s) 891, 1114
BseRI GAGGAG 1 cut(s) 37
BsgI GTGCAG 2 cut(s) 177, 796
Bsh1236I CGCG 1 cut(s) 519
BshFI GGCC 3 cut(s) 273, 465, 713
BsiHKCI CYCGRG 1 cut(s) 1248
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 3 cut(s) 397, 461, 581
BsmFI GGGAC 1 cut(s) 437
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 3 cut(s) 273, 465, 713
BsoBI CYCGRG 1 cut(s) 1248
Bsp143I GATC 6 cut(s) 180, 325, 562, 675, 980, 1186
Bsp19I CCATGG 1 cut(s) 575
BspACI CCGC 1 cut(s) 847
BspANI GGCC 3 cut(s) 273, 465, 713
BspFNI CGCG 1 cut(s) 519
BspLI GGNNCC 2 cut(s) 982, 1080
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 4 cut(s) 320, 683, 975, 988
BspTI CTTAAG 1 cut(s) 895
BsrDI GCAATG 1 cut(s) 981
BsrI ACTGG 2 cut(s) 891, 1114
BssECI CCNNGG 4 cut(s) 341, 575, 1020, 1059
BssMI GATC 6 cut(s) 180, 325, 562, 675, 980, 1186
BssT1I CCWWGG 3 cut(s) 575, 1020, 1059
Bst2UI CCWGG 3 cut(s) 330, 673, 916
Bst4CI ACNGT 9 cut(s) 162, 286, 472, 548, 572, 790, 1067, 1194, 1281
Bst6I CTCTTC 1 cut(s) 311
BstAFI CTTAAG 1 cut(s) 895
BstBAI YACGTR 1 cut(s) 602
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 876
BstDSI CCRYGG 1 cut(s) 575
BstF5I GGATG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 519
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 2 cut(s) 155, 521
BstKTI GATC 6 cut(s) 183, 328, 565, 678, 983, 1189
BstMBI GATC 6 cut(s) 180, 325, 562, 675, 980, 1186
BstNI CCWGG 3 cut(s) 330, 673, 916
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 4 cut(s) 328, 453, 671, 914
BstSFI CTRYAG 1 cut(s) 267
BstSNI TACGTA 1 cut(s) 602
BstUI CGCG 1 cut(s) 519
BstX2I RGATCY 2 cut(s) 325, 980
BstYI RGATCY 2 cut(s) 325, 980
BsuI GTATCC 2 cut(s) 876, 1138
BsuRI GGCC 3 cut(s) 273, 465, 713
BtgI CCRYGG 1 cut(s) 575
BtgZI GCGATG 1 cut(s) 970
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 7 cut(s) 158, 264, 282, 477, 568, 593, 1107
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 2 cut(s) 155, 521
Cfr13I GGNCC 1 cut(s) 711
CseI GACGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 871
CviAII CATG 7 cut(s) 7, 243, 576, 715, 722, 797, 1126
CviQI GTAC 1 cut(s) 871
DdeI CTNAG 1 cut(s) 876
DpnI GATC 6 cut(s) 182, 327, 564, 677, 982, 1188
DpnII GATC 6 cut(s) 180, 325, 562, 675, 980, 1186
DraI TTTAAA 1 cut(s) 1170
EaeI YGGCCR 1 cut(s) 463
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco105I TACGTA 1 cut(s) 602
Eco130I CCWWGG 3 cut(s) 575, 1020, 1059
Eco147I AGGCCT 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 975
Eco88I CYCGRG 1 cut(s) 1248
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 3 cut(s) 328, 671, 914
EcoT14I CCWWGG 3 cut(s) 575, 1020, 1059
ErhI CCWWGG 3 cut(s) 575, 1020, 1059
FaeI CATG 7 cut(s) 10, 246, 579, 718, 725, 800, 1129
FaqI GGGAC 1 cut(s) 437
FatI CATG 7 cut(s) 6, 242, 575, 714, 721, 796, 1125
FauNDI CATATG 2 cut(s) 536, 829
FbaI TGATCA 1 cut(s) 562
FokI GGATG 1 cut(s) 198
FspBI CTAG 3 cut(s) 171, 423, 1149
GlaI GCGC 2 cut(s) 154, 520
GsuI CTGGAG 1 cut(s) 898
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 3 cut(s) 273, 465, 713
HapII CCGG 1 cut(s) 455
HgaI GACGC 1 cut(s) 248
HhaI GCGC 2 cut(s) 155, 521
Hin1II CATG 7 cut(s) 10, 246, 579, 718, 725, 800, 1129
Hin6I GCGC 2 cut(s) 153, 519
HinP1I GCGC 2 cut(s) 153, 519
HinfI GANTC 5 cut(s) 38, 93, 277, 362, 919
HpaII CCGG 1 cut(s) 455
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 3 cut(s) 512, 873, 1056
Hpy188I TCNGA 8 cut(s) 185, 342, 367, 379, 555, 744, 994, 1186
Hpy188III TCNNGA 3 cut(s) 97, 146, 1214
Hpy8I GTNNAC 3 cut(s) 512, 873, 1056
HpyAV CCTTC 4 cut(s) 94, 469, 692, 1171
HpyCH4III ACNGT 9 cut(s) 162, 286, 472, 548, 572, 790, 1067, 1194, 1281
HpyCH4IV ACGT 2 cut(s) 314, 601
HpyCH4V TGCA 9 cut(s) 194, 207, 269, 540, 651, 813, 974, 1093, 1244
HpyF3I CTNAG 1 cut(s) 876
HpySE526I ACGT 2 cut(s) 314, 601
Hsp92II CATG 7 cut(s) 10, 246, 579, 718, 725, 800, 1129
HspAI GCGC 2 cut(s) 153, 519
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 6 cut(s) 180, 325, 562, 675, 980, 1186
LmnI GCTCC 1 cut(s) 917
LweI GCATC 1 cut(s) 1190
MaeI CTAG 3 cut(s) 171, 423, 1149
MaeII ACGT 2 cut(s) 314, 601
MaeIII GTNAC 6 cut(s) 104, 143, 602, 717, 842, 1265
MalI GATC 6 cut(s) 182, 327, 564, 677, 982, 1188
MboI GATC 6 cut(s) 180, 325, 562, 675, 980, 1186
MboII GAAGA 7 cut(s) 33, 141, 298, 677, 1141, 1144, 1147
MflI RGATCY 2 cut(s) 325, 980
MlsI TGGCCA 1 cut(s) 465
MluNI TGGCCA 1 cut(s) 465
MlyI GAGTC 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 96
Mox20I TGGCCA 1 cut(s) 465
MscI TGGCCA 1 cut(s) 465
MseI TTAA 4 cut(s) 444, 896, 1169, 1254
MslI CAYNNNNRTG 2 cut(s) 212, 1040
Msp20I TGGCCA 1 cut(s) 465
MspCI CTTAAG 1 cut(s) 895
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 4 cut(s) 330, 455, 673, 916
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 3 cut(s) 330, 673, 916
MvnI CGCG 1 cut(s) 519
NciI CCSGG 1 cut(s) 455
NcoI CCATGG 1 cut(s) 575
NdeI CATATG 2 cut(s) 536, 829
NdeII GATC 6 cut(s) 180, 325, 562, 675, 980, 1186
NlaIII CATG 7 cut(s) 10, 246, 579, 718, 725, 800, 1129
NlaIV GGNNCC 2 cut(s) 982, 1080
NmuCI GTSAC 3 cut(s) 143, 717, 1265
NspI RCATGY 1 cut(s) 246
PaeR7I CTCGAG 1 cut(s) 1248
PceI AGGCCT 1 cut(s) 273
PctI GAATGC 1 cut(s) 219
PfeI GAWTC 4 cut(s) 38, 277, 362, 919
PflMI CCANNNNNTGG 1 cut(s) 581
PfoI TCCNGGA 2 cut(s) 671, 914
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 602
Psp6I CCWGG 3 cut(s) 328, 671, 914
PspGI CCWGG 3 cut(s) 328, 671, 914
PspN4I GGNNCC 2 cut(s) 982, 1080
PspPI GGNCC 1 cut(s) 711
PspXI VCTCGAGB 1 cut(s) 1248
PsrI GAACNNNNNNTAC 2 cut(s) 827, 859
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 2 cut(s) 325, 980
RsaI GTAC 1 cut(s) 872
RsaNI GTAC 1 cut(s) 871
RseI CAYNNNNRTG 2 cut(s) 212, 1040
SaqAI TTAA 4 cut(s) 444, 896, 1169, 1254
Sau3AI GATC 6 cut(s) 180, 325, 562, 675, 980, 1186
Sau96I GGNCC 1 cut(s) 711
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 4 cut(s) 330, 455, 673, 916
SetI ASST 9 cut(s) 176, 317, 386, 480, 497, 604, 644, 684, 766
SfaNI GCATC 1 cut(s) 1190
SfcI CTRYAG 1 cut(s) 267
Sfr274I CTCGAG 1 cut(s) 1248
SlaI CTCGAG 1 cut(s) 1248
SmiMI CAYNNNNRTG 2 cut(s) 212, 1040
SmlI CTYRAG 2 cut(s) 895, 1248
SmoI CTYRAG 2 cut(s) 895, 1248
SnaBI TACGTA 1 cut(s) 602
SpeI ACTAGT 1 cut(s) 1148
SseBI AGGCCT 1 cut(s) 273
SsiI CCGC 1 cut(s) 847
SspMI CTAG 3 cut(s) 171, 423, 1149
StuI AGGCCT 1 cut(s) 273
StyD4I CCNGG 4 cut(s) 328, 453, 671, 914
StyI CCWWGG 3 cut(s) 575, 1020, 1059
TaaI ACNGT 9 cut(s) 162, 286, 472, 548, 572, 790, 1067, 1194, 1281
TaiI ACGT 2 cut(s) 317, 604
TaqI TCGA 3 cut(s) 943, 1032, 1249
TfiI GAWTC 4 cut(s) 38, 277, 362, 919
Tru1I TTAA 4 cut(s) 444, 896, 1169, 1254
Tru9I TTAA 4 cut(s) 444, 896, 1169, 1254
TscAI CASTG 7 cut(s) 165, 271, 289, 477, 575, 593, 1114
TseFI GTSAC 3 cut(s) 143, 717, 1265
Tsp45I GTSAC 3 cut(s) 143, 717, 1265
TspDTI ATGAA 7 cut(s) 443, 607, 621, 748, 876, 1000, 1142
TspRI CASTG 7 cut(s) 165, 271, 289, 477, 575, 593, 1114
Van91I CCANNNNNTGG 1 cut(s) 581
Vha464I CTTAAG 1 cut(s) 895
XapI RAATTY 7 cut(s) 113, 346, 432, 937, 1028, 1138, 1225
XceI RCATGY 1 cut(s) 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 399
XhoI CTCGAG 1 cut(s) 1248
XspI CTAG 3 cut(s) 171, 423, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.