FvH4_1g29200

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007585
Physical Location & Seq
Reverse (-)
21907260 .. 21917686
10427 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29200.t1

Sequence Viewer

Length: 1170 bp
ATGTTGGGTAGGAAAACCAGCCAAGTCTGTGATTCTTCCTCCTCCAATGGCGACTCTCCCGAGTCCCACCAAGAAAGGCTCTACCGAGTCTGGAAGGGCAACAACAAATTTTTGTGTGGTGGAAGATTAGTGTTTGGTCATGATGGCGCATCACTCTATTTAACTAGCTTCTTGATCGGATGTCCTGCACTCACATTCTGCATAAGAATGCTTGTCATCAGACATCAAGCACATTATGACTATCCTGTATTCACTGCAGGCCTTCTCCTCACTGTTTTGGATTTTATTTTTCTCTTCCTCACGTCTGGTAGAGATCCGGGTATAATTCCGAGGAATTCAAGACCGCCTGAATCAGATGGGGTTTGCGAATCTACGCCATCAATGGAGTGGATCAATAACAAAGGTTCCAGTATGAAATTACCCCGAATTAAGGATGTACAAGTCAATGGCCATACAGTGAAGGTCAAGTTTTGCGATACTTGTTTGTTGTATCGTCCACCGCGCGCTTCTCATTGTTCCATATGCAACAACTGTGTTCAGAAGTTCGATCACCATTGTCCATGGGTTGGTCAGTGTATTGGATTACGTAACTATCCATTTTTCATCTTGTTTATTTCATCATCAACCTTGCTCTGCATCTATGTCTTTGTGTTTTCCTGGATCAACCTTCTTCACCAACATGGCAACTTATGGAAGGCCATGTCACGCGATGTCGTCTCAGTAATCTTGATAGTATATTGCTTCATAGCAGTCTGGTTTGTCGGGGGGCTTACAGTTTTTCATGTCTATCTAATATGCACCAACCAGACAACATATGAGAACTTTCGTTACCGCTACGATAAGAATGAAAACCCATACACTAAGGGGATACTAGGAAACTTGAAAGAAGTGTTCTGCTCCAGGATTCCACCTTCAATGGTCAATTTCCGAGTATGGGTTTTAAAAGATGATGATAGTGCAATGGGGTCCGTTGCTTCAGAGAGTGAAAGAGGCTTTATTGGTTCCAAAGAGAAATTCGACATAGAAATGGGGAACAAGTTTACCAGGGACGGTAAGTTGGTAGTTCCAAGTATTTTGTGGAAATTGGACTACAATGGCATTGATGATAACATGAAGAAGAATAATTTAGACAGTAGTGGTTTCACTGAGGTCTTGAAAAGGAAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

390

Amino Acids

44.28

Weight (kDa)

8.85

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 155 - 276 8.1e-38 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 566
AccII CGCG 3 cut(s) 502, 504, 708
AciI CCGC 3 cut(s) 344, 500, 832
AclWI GGATC 3 cut(s) 308, 398, 668
AcoI YGGCCR 1 cut(s) 448
AcsI RAATTY 3 cut(s) 107, 334, 1013
AcuI CTGAAG 1 cut(s) 960
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 3 cut(s) 430, 566, 934
AgsI TTSAA 4 cut(s) 339, 883, 915, 1156
AjiI CACGTC 1 cut(s) 303
AjnI CCWGG 3 cut(s) 656, 899, 1043
AjuI GAANNNNNNNTTGG 2 cut(s) 998, 1030
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 721
AlwI GGATC 3 cut(s) 308, 398, 668
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 3 cut(s) 259, 448, 696
ApoI RAATTY 3 cut(s) 107, 334, 1013
AspLEI GCGC 3 cut(s) 149, 504, 506
AspS9I GGNCC 1 cut(s) 966
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 542, 665
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 1 cut(s) 966
BalI TGGCCA 1 cut(s) 450
BccI CCATC 3 cut(s) 137, 350, 385
BciT130I CCWGG 3 cut(s) 658, 901, 1045
BciVI GTATCC 1 cut(s) 861
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 721
BfaI CTAG 2 cut(s) 165, 872
BfmI CTRYAG 1 cut(s) 255
BfuI GTATCC 1 cut(s) 861
Bme1390I CCNGG 4 cut(s) 318, 658, 901, 1045
Bme18I GGWCC 1 cut(s) 966
BmeT110I CYCGRG 1 cut(s) 59
BmgBI CACGTC 1 cut(s) 303
BmgT120I GGNCC 1 cut(s) 966
BmiI GGNNCC 3 cut(s) 406, 967, 1003
BmrFI CCNGG 4 cut(s) 318, 658, 901, 1045
BmsI GCATC 2 cut(s) 158, 645
BpmI CTGGAG 1 cut(s) 883
BpuMI CCSGG 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 587
BsaJI CCNNGG 3 cut(s) 329, 560, 1044
Bsc4I CCNNNNNNNGG 3 cut(s) 430, 566, 934
Bse1I ACTGG 1 cut(s) 408
Bse3DI GCAATG 1 cut(s) 966
BseBI CCWGG 3 cut(s) 658, 901, 1045
BseDI CCNNGG 3 cut(s) 329, 560, 1044
BseGI GGATG 2 cut(s) 185, 439
BseLI CCNNNNNNNGG 3 cut(s) 430, 566, 934
BseMI GCAATG 1 cut(s) 966
BseMII CTCAG 2 cut(s) 732, 1137
BseNI ACTGG 1 cut(s) 408
BsePI GCGCGC 1 cut(s) 502
BseRI GAGGAG 2 cut(s) 31, 257
BsgI GTGCAG 1 cut(s) 171
Bsh1236I CGCG 3 cut(s) 502, 504, 708
BshFI GGCC 3 cut(s) 261, 450, 698
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 2 cut(s) 49, 1061
BslI CCNNNNNNNGG 3 cut(s) 430, 566, 934
BsmAI GTCTC 1 cut(s) 721
BsmBI CGTCTC 1 cut(s) 721
BsmFI GGGAC 2 cut(s) 49, 1061
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 3 cut(s) 261, 450, 698
BsoBI CYCGRG 1 cut(s) 59
Bsp1407I TGTACA 1 cut(s) 436
Bsp143I GATC 5 cut(s) 174, 313, 390, 547, 660
Bsp19I CCATGG 1 cut(s) 560
BspACI CCGC 3 cut(s) 344, 500, 832
BspANI GGCC 3 cut(s) 261, 450, 698
BspCNI CTCAG 2 cut(s) 731, 1138
BspFNI CGCG 3 cut(s) 502, 504, 708
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 3 cut(s) 406, 967, 1003
BspMAI CTGCAG 1 cut(s) 259
BspPI GGATC 3 cut(s) 308, 398, 668
BsrDI GCAATG 1 cut(s) 966
BsrGI TGTACA 1 cut(s) 436
BsrI ACTGG 1 cut(s) 408
BssECI CCNNGG 3 cut(s) 329, 560, 1044
BssHII GCGCGC 1 cut(s) 502
BssMI GATC 5 cut(s) 174, 313, 390, 547, 660
BssT1I CCWWGG 1 cut(s) 560
Bst2UI CCWGG 3 cut(s) 658, 901, 1045
Bst4CI ACNGT 6 cut(s) 274, 457, 533, 775, 1052, 1133
Bst6I CTCTTC 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 436
BstBAI YACGTR 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 259, 504
BstDEI CTNAG 3 cut(s) 718, 861, 1146
BstDSI CCRYGG 1 cut(s) 560
BstF5I GGATG 2 cut(s) 185, 439
BstFNI CGCG 3 cut(s) 502, 504, 708
BstHHI GCGC 3 cut(s) 149, 504, 506
BstKTI GATC 5 cut(s) 177, 316, 393, 550, 663
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 5 cut(s) 174, 313, 390, 547, 660
BstNI CCWGG 3 cut(s) 658, 901, 1045
BstSCI CCNGG 4 cut(s) 316, 656, 899, 1043
BstSFI CTRYAG 1 cut(s) 255
BstSNI TACGTA 1 cut(s) 587
BstUI CGCG 3 cut(s) 502, 504, 708
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuI GTATCC 1 cut(s) 861
BsuRI GGCC 3 cut(s) 261, 450, 698
BtgI CCRYGG 1 cut(s) 560
BtgZI GCGATG 1 cut(s) 723
BtrI CACGTC 1 cut(s) 303
BtsCI GGATG 2 cut(s) 185, 439
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 5 cut(s) 252, 270, 462, 578, 1143
Cac8I GCNNGC 2 cut(s) 259, 504
CciI TCATGA 1 cut(s) 139
CfoI GCGC 3 cut(s) 149, 504, 506
Cfr13I GGNCC 1 cut(s) 966
Csp6I GTAC 1 cut(s) 437
CviAII CATG 6 cut(s) 140, 561, 680, 700, 782, 1111
CviJI RGCY 8 cut(s) 21, 79, 168, 261, 450, 698, 769, 993
CviKI_1 RGCY 8 cut(s) 21, 79, 168, 261, 450, 698, 769, 993
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 3 cut(s) 718, 861, 1146
DpnI GATC 5 cut(s) 176, 315, 392, 549, 662
DpnII GATC 5 cut(s) 174, 313, 390, 547, 660
DraI TTTAAA 1 cut(s) 942
EaeI YGGCCR 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco105I TACGTA 1 cut(s) 587
Eco130I CCWWGG 1 cut(s) 560
Eco147I AGGCCT 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 966
Eco57I CTGAAG 1 cut(s) 960
Eco88I CYCGRG 1 cut(s) 59
EcoRI GAATTC 1 cut(s) 334
EcoRII CCWGG 3 cut(s) 656, 899, 1043
EcoT14I CCWWGG 1 cut(s) 560
ErhI CCWWGG 1 cut(s) 560
Esp3I CGTCTC 1 cut(s) 721
FaeI CATG 6 cut(s) 143, 564, 683, 703, 785, 1114
FaqI GGGAC 2 cut(s) 49, 1061
FatI CATG 6 cut(s) 139, 560, 679, 699, 781, 1110
FauNDI CATATG 2 cut(s) 521, 814
FokI GGATG 2 cut(s) 192, 446
FspBI CTAG 2 cut(s) 165, 872
GlaI GCGC 3 cut(s) 148, 503, 505
GsuI CTGGAG 1 cut(s) 883
HaeIII GGCC 3 cut(s) 261, 450, 698
HapII CCGG 1 cut(s) 317
HhaI GCGC 3 cut(s) 149, 504, 506
Hin1II CATG 6 cut(s) 143, 564, 683, 703, 785, 1114
Hin6I GCGC 3 cut(s) 147, 502, 504
HinP1I GCGC 3 cut(s) 147, 502, 504
HinfI GANTC 7 cut(s) 32, 53, 62, 87, 350, 368, 904
HpaII CCGG 1 cut(s) 317
HphI GGTGA 2 cut(s) 542, 665
Hpy166II GTNNAC 2 cut(s) 497, 1041
Hpy188I TCNGA 7 cut(s) 179, 221, 330, 355, 540, 929, 979
Hpy188III TCNNGA 7 cut(s) 59, 91, 140, 172, 339, 727, 1153
Hpy8I GTNNAC 2 cut(s) 497, 1041
HpyAV CCTTC 7 cut(s) 88, 272, 454, 677, 688, 921, 1156
HpyCH4III ACNGT 6 cut(s) 274, 457, 533, 775, 1052, 1133
HpyCH4IV ACGT 2 cut(s) 302, 586
HpyCH4V TGCA 7 cut(s) 188, 201, 257, 525, 636, 798, 959
HpyF3I CTNAG 3 cut(s) 718, 861, 1146
HpySE526I ACGT 2 cut(s) 302, 586
Hsp92II CATG 6 cut(s) 143, 564, 683, 703, 785, 1114
HspAI GCGC 3 cut(s) 147, 502, 504
Kzo9I GATC 5 cut(s) 174, 313, 390, 547, 660
LmnI GCTCC 1 cut(s) 902
LweI GCATC 2 cut(s) 158, 645
MaeI CTAG 2 cut(s) 165, 872
MaeII ACGT 2 cut(s) 302, 586
MaeIII GTNAC 3 cut(s) 587, 702, 827
MalI GATC 5 cut(s) 176, 315, 392, 549, 662
MboI GATC 5 cut(s) 174, 313, 390, 547, 660
MboII GAAGA 6 cut(s) 27, 135, 286, 662, 1126, 1129
MflI RGATCY 1 cut(s) 313
MlsI TGGCCA 1 cut(s) 450
MluCI AATT 9 cut(s) 107, 324, 334, 416, 426, 922, 1013, 1082, 1123
MluNI TGGCCA 1 cut(s) 450
MlyI GAGTC 3 cut(s) 47, 71, 96
MnlI CCTC 7 cut(s) 49, 52, 278, 308, 324, 983, 1141
Mox20I TGGCCA 1 cut(s) 450
MscI TGGCCA 1 cut(s) 450
MseI TTAA 3 cut(s) 161, 429, 941
MslI CAYNNNNRTG 3 cut(s) 206, 678, 1025
Msp20I TGGCCA 1 cut(s) 450
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 4 cut(s) 318, 658, 901, 1045
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 3 cut(s) 658, 901, 1045
MvnI CGCG 3 cut(s) 502, 504, 708
NciI CCSGG 1 cut(s) 318
NcoI CCATGG 1 cut(s) 560
NdeI CATATG 2 cut(s) 521, 814
NdeII GATC 5 cut(s) 174, 313, 390, 547, 660
NlaIII CATG 6 cut(s) 143, 564, 683, 703, 785, 1114
NlaIV GGNNCC 3 cut(s) 406, 967, 1003
NmuCI GTSAC 1 cut(s) 702
PagI TCATGA 1 cut(s) 139
PauI GCGCGC 1 cut(s) 502
PceI AGGCCT 1 cut(s) 261
PctI GAATGC 1 cut(s) 213
PfeI GAWTC 4 cut(s) 32, 350, 368, 904
PflMI CCANNNNNTGG 1 cut(s) 566
PfoI TCCNGGA 2 cut(s) 656, 899
PleI GAGTC 3 cut(s) 47, 70, 95
PpsI GAGTC 3 cut(s) 47, 70, 95
Ppu21I YACGTR 1 cut(s) 587
Psp6I CCWGG 3 cut(s) 656, 899, 1043
PspGI CCWGG 3 cut(s) 656, 899, 1043
PspN4I GGNNCC 3 cut(s) 406, 967, 1003
PspPI GGNCC 1 cut(s) 966
PsrI GAACNNNNNNTAC 2 cut(s) 812, 844
PstI CTGCAG 1 cut(s) 259
PsuI RGATCY 1 cut(s) 313
PteI GCGCGC 1 cut(s) 502
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
RseI CAYNNNNRTG 3 cut(s) 206, 678, 1025
SaqAI TTAA 3 cut(s) 161, 429, 941
Sau3AI GATC 5 cut(s) 174, 313, 390, 547, 660
Sau96I GGNCC 1 cut(s) 966
SchI GAGTC 3 cut(s) 47, 71, 96
ScrFI CCNGG 4 cut(s) 318, 658, 901, 1045
SetI ASST 9 cut(s) 170, 305, 406, 465, 589, 629, 669, 913, 1152
SfaNI GCATC 2 cut(s) 158, 645
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 966
SmiMI CAYNNNNRTG 3 cut(s) 206, 678, 1025
SnaBI TACGTA 1 cut(s) 587
Sse9I AATT 9 cut(s) 107, 324, 334, 416, 426, 922, 1013, 1082, 1123
SseBI AGGCCT 1 cut(s) 261
SsiI CCGC 3 cut(s) 344, 500, 832
SspMI CTAG 2 cut(s) 165, 872
StuI AGGCCT 1 cut(s) 261
StyD4I CCNGG 4 cut(s) 316, 656, 899, 1043
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 6 cut(s) 274, 457, 533, 775, 1052, 1133
TaiI ACGT 2 cut(s) 305, 589
TaqI TCGA 2 cut(s) 546, 1017
TasI AATT 9 cut(s) 107, 324, 334, 416, 426, 922, 1013, 1082, 1123
TatI WGTACW 1 cut(s) 436
TfiI GAWTC 4 cut(s) 32, 350, 368, 904
Tru1I TTAA 3 cut(s) 161, 429, 941
Tru9I TTAA 3 cut(s) 161, 429, 941
TscAI CASTG 5 cut(s) 259, 277, 462, 578, 1150
TseFI GTSAC 1 cut(s) 702
Tsp45I GTSAC 1 cut(s) 702
TspDTI ATGAA 7 cut(s) 428, 592, 606, 733, 770, 861, 1127
TspGWI ACGGA 1 cut(s) 958
TspRI CASTG 5 cut(s) 259, 277, 462, 578, 1150
Van91I CCANNNNNTGG 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 966
XapI RAATTY 3 cut(s) 107, 334, 1013
XcmI CCANNNNNNNNNTGG 2 cut(s) 384, 1074
XspI CTAG 2 cut(s) 165, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.