RLG00000022669

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0007585
Physical Location & Seq
Forward (+)
7185162 .. 7191211
6050 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022669

Sequence Viewer

Length: 1317 bp
ATGAAGGTAAATGCCCCGCCGGATGTTTTGGCCAATTACGGCGCTTCGACTGATGCAGGAAAAAGAGCCAAGTCTGTGATTCTTCCTCCTCCATTGATGACCCTCCCAAGTCCAACCAAGAAAGGCTCTACCGAGTCTGGAAGGAAATTCTTATGTGGCGGAAGATTAGTGTTTGGTCATGATGGCGCATCACTGTATCTAACTAGCTTTTTGATCGGATGTCCCGCACTCACATTTTGCATAAGAATGCTTGTTACGATCAAAGGACATCAAGCACATTATAGCTATCCCGTATTCACTGCAGGCCTCATCCTCACTGTTTTGGATTTTACTTTTCTCTTCCTCACGTCTGGTAGAGATCCTGGTATAATTCCGAGGAATTCAACATCACTTGAATCGGATGAGGCTTCCGATACCTTTACCCCATCAATGGAGTGGGTCAATAACAAAGGCTCTAGTATGAAAATTCCCCGAATTAAAGATGTCTTGATTAATGGCCATACAGTGAAGGTCAAGTTTTGCGATACCTGTTTGTTATATCGCCCACCACGCGCCTCTCATTGTTCCATCTGCAACAACTGTGTTCAGAAGTTTGATCACCACTGTCCATGGGTTGGTCAGTGTATTGGATTACGTAACTATCCATTTTTCATCTTGTTTATTTCATCATCAACCTTGCTCTGCATATATGTCTTTGTGTTTTCCTGGATCAACCTTCTTCAAAAAGGGGGCAATCTATGGAAGGCCATGTCACATGATGTCGTATCAGTTATTCTGATAGTATATTGCTTCATAGCTGTCTGGTTTGTTGGGGGGCTTACAGTTTTCCATGTCTATCTAATTTGCACCAACCAGACAACATATGAGAACTTTCGTTACCGCTATGATAAGAACGAAAACCCTTACACTAAGGGGATATTGGGAAACTTAAAAGAAGTGTTCTGCTCCAGGATTCCACCATCAATGGTAAATTTCCGAGCATGGGTTCTAAAAGATGATGATACTGCAATGGGATCCATCGCTTCAGAGAGTGAAAGAGGCTTCATCAGTTCCAAGGAGAAATTCGACATAGAAATGGGGAACAAGTTTACCAAGGACGGTAATATGATGGTTCCAAGTATATTGCAGAAATTGGACTACACTGGCATTGATGATAACATGAAAAAGAAGAATTTGGATAGTAGTGGTTTCAATGACGATTTAAAAAGGAAGGCATCAGATCAACCGTTTCTATTTCCTATTGGTCAAGAAATAAAAAATTCAAAGGGGGGTTCTGCAGCTGGAGTTGATTCTGTTAGTGACAAGAGAACACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

439

Amino Acids

48.82

Weight (kDa)

8.93

Isoelectric Point (pI)

29.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 171 - 292 2.4e-37 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 614
AccII CGCG 1 cut(s) 552
AciI CCGC 4 cut(s) 17, 159, 225, 880
AclWI GGATC 4 cut(s) 353, 716, 1008, 1021
AcoI YGGCCR 2 cut(s) 30, 496
AcsI RAATTY 7 cut(s) 146, 379, 465, 970, 1061, 1171, 1258
AcuI CTGAAG 1 cut(s) 1008
AfiI CCNNNNNNNGG 3 cut(s) 430, 614, 982
AgsI TTSAA 5 cut(s) 384, 395, 722, 1192, 1263
AjiI CACGTC 1 cut(s) 348
AjnI CCWGG 3 cut(s) 361, 704, 947
AjuI GAANNNNNNNTTGG 2 cut(s) 1046, 1078
AluBI AGCT 4 cut(s) 207, 285, 797, 1280
AluI AGCT 4 cut(s) 207, 285, 797, 1280
AlwI GGATC 4 cut(s) 353, 716, 1008, 1021
AoxI GGCC 4 cut(s) 30, 304, 496, 744
ApeKI GCWGC 1 cut(s) 1277
ApoI RAATTY 7 cut(s) 146, 379, 465, 970, 1061, 1171, 1258
AseI ATTAAT 1 cut(s) 492
AspLEI GCGC 3 cut(s) 44, 188, 554
AsuHPI GGTGA 1 cut(s) 590
BalI TGGCCA 2 cut(s) 32, 498
BamHI GGATCC 1 cut(s) 1013
BbvI GCAGC 1 cut(s) 1289
BccI CCATC 6 cut(s) 176, 433, 575, 967, 1025, 1102
BceAI ACGGC 1 cut(s) 55
BciT130I CCWGG 3 cut(s) 363, 706, 949
BclI TGATCA 1 cut(s) 595
BfaI CTAG 2 cut(s) 204, 456
BfmI CTRYAG 2 cut(s) 300, 1275
BfoI RGCGCY 1 cut(s) 45
BisI GCNGC 1 cut(s) 1278
BlsI GCNGC 1 cut(s) 1279
Bme1390I CCNGG 3 cut(s) 363, 706, 949
BmgBI CACGTC 1 cut(s) 348
BmiI GGNNCC 2 cut(s) 1015, 1113
BmrFI CCNGG 3 cut(s) 363, 706, 949
BmsI GCATC 3 cut(s) 43, 197, 1223
BpmI CTGGAG 2 cut(s) 931, 1302
BsaAI YACGTR 1 cut(s) 635
BsaJI CCNNGG 4 cut(s) 374, 608, 1053, 1092
Bsc4I CCNNNNNNNGG 3 cut(s) 430, 614, 982
Bse1I ACTGG 1 cut(s) 1147
Bse3DI GCAATG 1 cut(s) 1014
BseBI CCWGG 3 cut(s) 363, 706, 949
BseDI CCNNGG 4 cut(s) 374, 608, 1053, 1092
BseGI GGATG 4 cut(s) 28, 224, 309, 406
BseLI CCNNNNNNNGG 3 cut(s) 430, 614, 982
BseMI GCAATG 1 cut(s) 1014
BseNI ACTGG 1 cut(s) 1147
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 1289
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 4 cut(s) 32, 306, 498, 746
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 207
BslI CCNNNNNNNGG 3 cut(s) 430, 614, 982
BsmFI GGGAC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 252
BsnI GGCC 4 cut(s) 32, 306, 498, 746
Bsp143I GATC 7 cut(s) 213, 258, 358, 595, 708, 1013, 1219
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 4 cut(s) 17, 159, 225, 880
BspANI GGCC 4 cut(s) 32, 306, 498, 746
BspFNI CGCG 1 cut(s) 552
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 1015, 1113
BspMAI CTGCAG 2 cut(s) 304, 1279
BspPI GGATC 4 cut(s) 353, 716, 1008, 1021
BsrDI GCAATG 1 cut(s) 1014
BsrI ACTGG 1 cut(s) 1147
BssECI CCNNGG 4 cut(s) 374, 608, 1053, 1092
BssMI GATC 7 cut(s) 213, 258, 358, 595, 708, 1013, 1219
BssT1I CCWWGG 3 cut(s) 608, 1053, 1092
Bst2UI CCWGG 3 cut(s) 363, 706, 949
Bst4CI ACNGT 9 cut(s) 195, 319, 505, 581, 605, 823, 1100, 1227, 1314
Bst6I CTCTTC 1 cut(s) 344
BstBAI YACGTR 1 cut(s) 635
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 909
BstDSI CCRYGG 1 cut(s) 608
BstF5I GGATG 4 cut(s) 28, 224, 309, 406
BstFNI CGCG 1 cut(s) 552
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 3 cut(s) 44, 188, 554
BstKTI GATC 7 cut(s) 216, 261, 361, 598, 711, 1016, 1222
BstMBI GATC 7 cut(s) 213, 258, 358, 595, 708, 1013, 1219
BstMWI GCNNNNNNNGC 1 cut(s) 549
BstNI CCWGG 3 cut(s) 363, 706, 949
BstSCI CCNGG 3 cut(s) 361, 704, 947
BstSFI CTRYAG 2 cut(s) 300, 1275
BstSNI TACGTA 1 cut(s) 635
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 1 cut(s) 1289
BstX2I RGATCY 2 cut(s) 358, 1013
BstYI RGATCY 2 cut(s) 358, 1013
BsuRI GGCC 4 cut(s) 32, 306, 498, 746
BtgI CCRYGG 1 cut(s) 608
BtgZI GCGATG 1 cut(s) 1003
BtrI CACGTC 1 cut(s) 348
BtsCI GGATG 4 cut(s) 28, 224, 309, 406
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 7 cut(s) 191, 297, 315, 510, 601, 626, 1140
Cac8I GCNNGC 1 cut(s) 304
CciI TCATGA 1 cut(s) 178
CfoI GCGC 3 cut(s) 44, 188, 554
CviAII CATG 7 cut(s) 179, 609, 748, 755, 830, 981, 1159
DdeI CTNAG 1 cut(s) 909
DpnI GATC 7 cut(s) 215, 260, 360, 597, 710, 1015, 1221
DpnII GATC 7 cut(s) 213, 258, 358, 595, 708, 1013, 1219
DraI TTTAAA 1 cut(s) 1203
EaeI YGGCCR 2 cut(s) 30, 496
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
EciI GGCGGA 1 cut(s) 174
Eco105I TACGTA 1 cut(s) 635
Eco130I CCWWGG 3 cut(s) 608, 1053, 1092
Eco147I AGGCCT 1 cut(s) 306
Eco57I CTGAAG 1 cut(s) 1008
EcoRI GAATTC 1 cut(s) 379
EcoRII CCWGG 3 cut(s) 361, 704, 947
EcoT14I CCWWGG 3 cut(s) 608, 1053, 1092
ErhI CCWWGG 3 cut(s) 608, 1053, 1092
FaeI CATG 7 cut(s) 182, 612, 751, 758, 833, 984, 1162
FaqI GGGAC 1 cut(s) 207
FatI CATG 7 cut(s) 178, 608, 747, 754, 829, 980, 1158
FauI CCCGC 2 cut(s) 24, 232
FauNDI CATATG 1 cut(s) 862
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 1 cut(s) 1278
FokI GGATG 4 cut(s) 35, 231, 296, 413
Fsp4HI GCNGC 1 cut(s) 1278
FspBI CTAG 2 cut(s) 204, 456
GlaI GCGC 3 cut(s) 43, 187, 553
GluI GCNGC 1 cut(s) 1278
GsuI CTGGAG 2 cut(s) 931, 1302
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 4 cut(s) 32, 306, 498, 746
HapII CCGG 1 cut(s) 20
HhaI GCGC 3 cut(s) 44, 188, 554
Hin1II CATG 7 cut(s) 182, 612, 751, 758, 833, 984, 1162
Hin6I GCGC 3 cut(s) 42, 186, 552
HinP1I GCGC 3 cut(s) 42, 186, 552
HinfI GANTC 5 cut(s) 79, 134, 395, 952, 1289
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 590
Hpy166II GTNNAC 1 cut(s) 1089
Hpy188I TCNGA 9 cut(s) 218, 375, 400, 412, 588, 777, 977, 1027, 1219
Hpy188III TCNNGA 4 cut(s) 138, 179, 487, 1247
Hpy8I GTNNAC 1 cut(s) 1089
HpyAV CCTTC 5 cut(s) 135, 502, 725, 736, 1204
HpyCH4III ACNGT 9 cut(s) 195, 319, 505, 581, 605, 823, 1100, 1227, 1314
HpyCH4IV ACGT 2 cut(s) 347, 634
HpyCH4V TGCA 9 cut(s) 56, 240, 302, 573, 684, 846, 1007, 1126, 1277
HpyF10VI GCNNNNNNNGC 1 cut(s) 549
HpyF3I CTNAG 1 cut(s) 909
HpySE526I ACGT 2 cut(s) 347, 634
Hsp92II CATG 7 cut(s) 182, 612, 751, 758, 833, 984, 1162
HspAI GCGC 3 cut(s) 42, 186, 552
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 7 cut(s) 213, 258, 358, 595, 708, 1013, 1219
LmnI GCTCC 1 cut(s) 950
Lsp1109I GCAGC 1 cut(s) 1289
LweI GCATC 3 cut(s) 43, 197, 1223
MaeI CTAG 2 cut(s) 204, 456
MaeII ACGT 2 cut(s) 347, 634
MaeIII GTNAC 5 cut(s) 253, 635, 750, 875, 1298
MalI GATC 7 cut(s) 215, 260, 360, 597, 710, 1015, 1221
MboI GATC 7 cut(s) 213, 258, 358, 595, 708, 1013, 1219
MboII GAAGA 5 cut(s) 74, 174, 331, 710, 1180
MflI RGATCY 2 cut(s) 358, 1013
MlsI TGGCCA 2 cut(s) 32, 498
MluNI TGGCCA 2 cut(s) 32, 498
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 137
Mox20I TGGCCA 2 cut(s) 32, 498
MscI TGGCCA 2 cut(s) 32, 498
MseI TTAA 4 cut(s) 477, 492, 929, 1202
MslI CAYNNNNRTG 2 cut(s) 245, 1073
Msp20I TGGCCA 2 cut(s) 32, 498
MspA1I CMGCKG 1 cut(s) 1280
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 3 cut(s) 363, 706, 949
Mva1269I GAATGC 1 cut(s) 252
MvaI CCWGG 3 cut(s) 363, 706, 949
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 1 cut(s) 549
NcoI CCATGG 1 cut(s) 608
NdeI CATATG 1 cut(s) 862
NdeII GATC 7 cut(s) 213, 258, 358, 595, 708, 1013, 1219
NlaIII CATG 7 cut(s) 182, 612, 751, 758, 833, 984, 1162
NlaIV GGNNCC 2 cut(s) 1015, 1113
NmuCI GTSAC 2 cut(s) 750, 1298
PagI TCATGA 1 cut(s) 178
PceI AGGCCT 1 cut(s) 306
PctI GAATGC 1 cut(s) 252
PfeI GAWTC 4 cut(s) 79, 395, 952, 1289
PflMI CCANNNNNTGG 1 cut(s) 614
PfoI TCCNGGA 2 cut(s) 704, 947
PkrI GCNGC 1 cut(s) 1279
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 635
PshBI ATTAAT 1 cut(s) 492
Psp6I CCWGG 3 cut(s) 361, 704, 947
PspGI CCWGG 3 cut(s) 361, 704, 947
PspN4I GGNNCC 2 cut(s) 1015, 1113
PsrI GAACNNNNNNTAC 2 cut(s) 860, 892
PstI CTGCAG 2 cut(s) 304, 1279
PsuI RGATCY 2 cut(s) 358, 1013
PvuII CAGCTG 1 cut(s) 1280
RseI CAYNNNNRTG 2 cut(s) 245, 1073
SaqAI TTAA 4 cut(s) 477, 492, 929, 1202
SatI GCNGC 1 cut(s) 1278
Sau3AI GATC 7 cut(s) 213, 258, 358, 595, 708, 1013, 1219
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 3 cut(s) 363, 706, 949
SfaNI GCATC 3 cut(s) 43, 197, 1223
SfcI CTRYAG 2 cut(s) 300, 1275
SmiMI CAYNNNNRTG 2 cut(s) 245, 1073
SnaBI TACGTA 1 cut(s) 635
SseBI AGGCCT 1 cut(s) 306
SsiI CCGC 4 cut(s) 17, 159, 225, 880
SspMI CTAG 2 cut(s) 204, 456
StuI AGGCCT 1 cut(s) 306
StyD4I CCNGG 3 cut(s) 361, 704, 947
StyI CCWWGG 3 cut(s) 608, 1053, 1092
TaaI ACNGT 9 cut(s) 195, 319, 505, 581, 605, 823, 1100, 1227, 1314
TaiI ACGT 2 cut(s) 350, 637
TaqI TCGA 2 cut(s) 47, 1065
TfiI GAWTC 4 cut(s) 79, 395, 952, 1289
Tru1I TTAA 4 cut(s) 477, 492, 929, 1202
Tru9I TTAA 4 cut(s) 477, 492, 929, 1202
TscAI CASTG 7 cut(s) 198, 304, 322, 510, 608, 626, 1147
TseFI GTSAC 2 cut(s) 750, 1298
TseI GCWGC 1 cut(s) 1277
Tsp45I GTSAC 2 cut(s) 750, 1298
TspDTI ATGAA 7 cut(s) 17, 476, 640, 654, 781, 1033, 1175
TspRI CASTG 7 cut(s) 198, 304, 322, 510, 608, 626, 1147
Van91I CCANNNNNTGG 1 cut(s) 614
VspI ATTAAT 1 cut(s) 492
XapI RAATTY 7 cut(s) 146, 379, 465, 970, 1061, 1171, 1258
XcmI CCANNNNNNNNNTGG 1 cut(s) 432
XspI CTAG 2 cut(s) 204, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.