Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001610.1

Orthogroup ID

OG0007585

Physical Location & Seq

Genomic Coordinates Forward (+)

1133 .. 7540

Gene Structure 6408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001610.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atggctcgttctgtgacttggagcatgcagggtacagaggcattgttcgtgatcatgatggggcttttgtgcatgcctttgcagcccgagttcagattcggcggtggtggtgcggtttgttcagtctcttgcaccggtgccttggagattgcgtatcacgattttacttttctcttcctcacctctggtagagatcctggtataattccgaggaattcaacatcacttgaatcagatgaggcttccgatacctttaccccatcaatggagtgggtgaataacaaaggttctagtatgaaaattccccgaattaaagatgtcccggtcaatggccatacagtgaaggtcaagttttgtgatacctgtttgttatatcgcccaccacgcgcctctcattgttccatctgcaacaactgtgttcagaagtttgatcaccactgtccatgggttggtcagtgtattggattaacaacatatgagaactttcgttaccgctatgataagaacgaaaacccgtacactaaggggatactgggaaacttaaaagaagtgttctgctccaggattccaccatcaatggtaaatttccgagcgtgggttctaaaagatgatgatattgcaatgggatccatcgcttcagagagtgaaagaggcttcatcagttccaaggagaaattcgacatagaaatggggaacaagtttaccaaggacggtaatatgatggttccaagtatattgcagaaattggactacactggcattgatgataacatgaagaagaagaatttggatactagtggtttcaatgatgatttaaaaaggaaggcatcagatcaaccgtttctctttcctattggtcaagaaataaaaaattcaaaggggggttctgcaactcgagttaattctgttagtgacaagaggacacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

309

Amino Acids

34.58

Weight (kDa)

8.23

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40990 AT3G56920 AT5G05070
fragaria_vesca	FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200 FvH4_1g29200
malus_domestica	MD00G1068100.v1.1 MD00G1118200.v1.1
prunus_persica	Prupe.7G020700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494561
rosa_laevigata	RLG00000022669
rosa_multiflora	Rmu_sc0001610.1_g000001
rosa_rugosa	Rorug03G0265800 Rorug03G0265900
rosa_samantha	Rh3AG315900 Rh3BG351400 Rh3CG348000 Rh3DG350600
rosa_wichuraiana	Rw3G027580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccB7I	CCANNNNNTGG	1 cut(s)	449
AccII	CGCG	1 cut(s)	387
AciI	CCGC	3 cut(s)	102, 113, 493
AclWI	GGATC	3 cut(s)	188, 621, 634
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	6 cut(s)	214, 300, 583, 674, 784, 871
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	2 cut(s)	34, 518
AfiI	CCNNNNNNNGG	4 cut(s)	265, 329, 449, 595
AgeI	ACCGGT	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	219, 230, 805, 876
AhlI	ACTAGT	1 cut(s)	794
AjnI	CCWGG	2 cut(s)	196, 560
AjuI	GAANNNNNNNTTGG	4 cut(s)	659, 691, 770, 802
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	188, 621, 634
Ama87I	CYCGRG	2 cut(s)	86, 894
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	6 cut(s)	214, 300, 583, 674, 784, 871
AsiGI	ACCGGT	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	389
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	3 cut(s)	172, 286, 425
AvaI	CYCGRG	2 cut(s)	86, 894
BalI	TGGCCA	1 cut(s)	333
BamHI	GGATCC	1 cut(s)	626
BanI	GGYRCC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	6 cut(s)	52, 268, 410, 580, 638, 715
BciT130I	CCWGG	2 cut(s)	198, 562
BciVI	GTATCC	2 cut(s)	522, 784
BclI	TGATCA	2 cut(s)	51, 430
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	130
BcuI	ACTAGT	1 cut(s)	794
BfaI	CTAG	2 cut(s)	291, 795
BfuI	GTATCC	2 cut(s)	522, 784
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	3 cut(s)	198, 323, 562
BmeT110I	CYCGRG	2 cut(s)	86, 894
BmiI	GGNNCC	3 cut(s)	139, 628, 726
BmrFI	CCNGG	3 cut(s)	198, 323, 562
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	1 cut(s)	836
BmuI	ACTGGG	1 cut(s)	542
BpmI	CTGGAG	1 cut(s)	544
BpuMI	CCSGG	1 cut(s)	323
BsaJI	CCNNGG	5 cut(s)	141, 209, 443, 666, 705
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	4 cut(s)	265, 329, 449, 595
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	537, 760
Bse3DI	GCAATG	1 cut(s)	627
BseBI	CCWGG	2 cut(s)	198, 562
BseDI	CCNNGG	5 cut(s)	141, 209, 443, 666, 705
BseLI	CCNNNNNNNGG	4 cut(s)	265, 329, 449, 595
BseMI	GCAATG	1 cut(s)	627
BseNI	ACTGG	2 cut(s)	537, 760
BseXI	GCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	137
BshTI	ACCGGT	1 cut(s)	134
BsiHKCI	CYCGRG	2 cut(s)	86, 894
BsiSI	CCGG	2 cut(s)	135, 323
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	4 cut(s)	265, 329, 449, 595
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	333
BsoBI	CYCGRG	2 cut(s)	86, 894
Bsp143I	GATC	5 cut(s)	51, 193, 430, 626, 832
Bsp19I	CCATGG	1 cut(s)	443
BspACI	CCGC	3 cut(s)	102, 113, 493
BspANI	GGCC	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	3 cut(s)	139, 628, 726
BspPI	GGATC	3 cut(s)	188, 621, 634
BspT107I	GGYRCC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	627
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	537, 760
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	5 cut(s)	141, 209, 443, 666, 705
BssMI	GATC	5 cut(s)	51, 193, 430, 626, 832
BssT1I	CCWWGG	4 cut(s)	141, 443, 666, 705
Bst2UI	CCWGG	2 cut(s)	198, 562
Bst4CI	ACNGT	6 cut(s)	340, 416, 440, 713, 840, 927
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	26, 74
BstDEI	CTNAG	1 cut(s)	522
BstDSI	CCRYGG	1 cut(s)	443
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	5 cut(s)	54, 196, 433, 629, 835
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	5 cut(s)	51, 193, 430, 626, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 384
BstNI	CCWGG	2 cut(s)	198, 562
BstNSI	RCATGY	2 cut(s)	28, 76
BstSCI	CCNGG	3 cut(s)	196, 321, 560
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	94
BstX2I	RGATCY	2 cut(s)	193, 626
BstYI	RGATCY	2 cut(s)	193, 626
BsuI	GTATCC	2 cut(s)	522, 784
BsuRI	GGCC	1 cut(s)	333
BtgI	CCRYGG	1 cut(s)	443
BtgZI	GCGATG	1 cut(s)	616
BtsIMutI	CAGTG	4 cut(s)	345, 436, 461, 753
Cac8I	GCNNGC	2 cut(s)	26, 74
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	33, 517
CspAI	ACCGGT	1 cut(s)	134
CviAII	CATG	5 cut(s)	25, 55, 73, 444, 772
CviJI	RGCY	6 cut(s)	5, 64, 85, 242, 333, 654
CviKI_1	RGCY	6 cut(s)	5, 64, 85, 242, 333, 654
CviQI	GTAC	2 cut(s)	33, 517
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	5 cut(s)	53, 195, 432, 628, 834
DpnII	GATC	5 cut(s)	51, 193, 430, 626, 832
DraI	TTTAAA	1 cut(s)	816
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco130I	CCWWGG	4 cut(s)	141, 443, 666, 705
Eco57I	CTGAAG	1 cut(s)	621
Eco88I	CYCGRG	2 cut(s)	86, 894
EcoRI	GAATTC	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	196, 560
EcoT14I	CCWWGG	4 cut(s)	141, 443, 666, 705
ErhI	CCWWGG	4 cut(s)	141, 443, 666, 705
FaeI	CATG	5 cut(s)	28, 58, 76, 447, 775
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	5 cut(s)	24, 54, 72, 443, 771
FauNDI	CATATG	1 cut(s)	475
FbaI	TGATCA	2 cut(s)	51, 430
Fnu4HI	GCNGC	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	2 cut(s)	291, 795
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	544
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	2 cut(s)	135, 323
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	5 cut(s)	28, 58, 76, 447, 775
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HinfI	GANTC	3 cut(s)	96, 230, 565
HpaII	CCGG	2 cut(s)	135, 323
HphI	GGTGA	3 cut(s)	172, 286, 425
Hpy166II	GTNNAC	2 cut(s)	519, 702
Hpy188I	TCNGA	8 cut(s)	95, 210, 235, 247, 423, 590, 640, 832
Hpy188III	TCNNGA	4 cut(s)	49, 55, 158, 860
Hpy8I	GTNNAC	2 cut(s)	519, 702
HpyAV	CCTTC	2 cut(s)	337, 817
HpyCH4III	ACNGT	6 cut(s)	340, 416, 440, 713, 840, 927
HpyCH4V	TGCA	8 cut(s)	28, 72, 82, 132, 408, 620, 739, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 384
HpyF3I	CTNAG	1 cut(s)	522
Hsp92II	CATG	5 cut(s)	28, 58, 76, 447, 775
HspAI	GCGC	1 cut(s)	387
Ksp22I	TGATCA	2 cut(s)	51, 430
Kzo9I	GATC	5 cut(s)	51, 193, 430, 626, 832
LmnI	GCTCC	2 cut(s)	21, 563
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	836
MaeI	CTAG	2 cut(s)	291, 795
MaeIII	GTNAC	3 cut(s)	13, 488, 911
MalI	GATC	5 cut(s)	53, 195, 432, 628, 834
MboI	GATC	5 cut(s)	51, 193, 430, 626, 832
MboII	GAAGA	4 cut(s)	166, 787, 790, 793
MflI	RGATCY	2 cut(s)	193, 626
MlsI	TGGCCA	1 cut(s)	333
MluNI	TGGCCA	1 cut(s)	333
MnlI	CCTC	8 cut(s)	31, 188, 193, 204, 232, 400, 644, 912
Mox20I	TGGCCA	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	5 cut(s)	312, 467, 542, 815, 900
MslI	CAYNNNNRTG	1 cut(s)	686
Msp20I	TGGCCA	1 cut(s)	333
MspI	CCGG	2 cut(s)	135, 323
MspR9I	CCNGG	3 cut(s)	198, 323, 562
MvaI	CCWGG	2 cut(s)	198, 562
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	2 cut(s)	82, 384
NciI	CCSGG	1 cut(s)	323
NcoI	CCATGG	1 cut(s)	443
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	5 cut(s)	51, 193, 430, 626, 832
NlaIII	CATG	5 cut(s)	28, 58, 76, 447, 775
NlaIV	GGNNCC	3 cut(s)	139, 628, 726
NmuCI	GTSAC	2 cut(s)	13, 911
NspI	RCATGY	2 cut(s)	28, 76
PaeI	GCATGC	2 cut(s)	28, 76
PaeR7I	CTCGAG	1 cut(s)	894
PagI	TCATGA	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	96, 230, 565
PflMI	CCANNNNNTGG	1 cut(s)	449
PfoI	TCCNGGA	1 cut(s)	560
PinAI	ACCGGT	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	196, 560
PspGI	CCWGG	2 cut(s)	196, 560
PspN4I	GGNNCC	3 cut(s)	139, 628, 726
PspXI	VCTCGAGB	1 cut(s)	894
PsrI	GAACNNNNNNTAC	2 cut(s)	473, 505
PsuI	RGATCY	2 cut(s)	193, 626
RsaI	GTAC	2 cut(s)	34, 518
RsaNI	GTAC	2 cut(s)	33, 517
RseI	CAYNNNNRTG	1 cut(s)	686
SaqAI	TTAA	5 cut(s)	312, 467, 542, 815, 900
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	5 cut(s)	51, 193, 430, 626, 832
ScrFI	CCNGG	3 cut(s)	198, 323, 562
SetI	ASST	5 cut(s)	185, 254, 289, 348, 365
SfaNI	GCATC	1 cut(s)	836
Sfr274I	CTCGAG	1 cut(s)	894
SgrAI	CRCCGGYG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	894
SmiMI	CAYNNNNRTG	1 cut(s)	686
SmlI	CTYRAG	1 cut(s)	894
SmoI	CTYRAG	1 cut(s)	894
SpeI	ACTAGT	1 cut(s)	794
SphI	GCATGC	2 cut(s)	28, 76
SsiI	CCGC	3 cut(s)	102, 113, 493
SspMI	CTAG	2 cut(s)	291, 795
StyD4I	CCNGG	3 cut(s)	196, 321, 560
StyI	CCWWGG	4 cut(s)	141, 443, 666, 705
TaaI	ACNGT	6 cut(s)	340, 416, 440, 713, 840, 927
TaqI	TCGA	2 cut(s)	678, 895
TfiI	GAWTC	3 cut(s)	96, 230, 565
Tru1I	TTAA	5 cut(s)	312, 467, 542, 815, 900
Tru9I	TTAA	5 cut(s)	312, 467, 542, 815, 900
TscAI	CASTG	4 cut(s)	345, 443, 461, 760
TseFI	GTSAC	2 cut(s)	13, 911
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	2 cut(s)	13, 911
TspDTI	ATGAA	3 cut(s)	311, 646, 788
TspRI	CASTG	4 cut(s)	345, 443, 461, 760
Van91I	CCANNNNNTGG	1 cut(s)	449
XapI	RAATTY	6 cut(s)	214, 300, 583, 674, 784, 871
XceI	RCATGY	2 cut(s)	28, 76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	267
XhoI	CTCGAG	1 cut(s)	894
XspI	CTAG	2 cut(s)	291, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.