Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007794

Physical Location & Seq

Genomic Coordinates Reverse (-)

17200657 .. 17202848

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCGTTGAGAATCAGGAAGGCGACGACGACACTTCTCTTCTCCGGTGGGATTACTCATGGAACGGATCGGATCGCGAGAACCGGAGCATTGCTCAGCCGTTGGATCTCCTCTGCTTCGTCATCTTCCGCTGTTGTAGCGGATGATGAATCTAGTGGGATTTACGGATTGGGAAGTGTGTTGAAAGAGTATGAAGATTATAGGAGATCTCTCTATGGTGAGATCACTCATAAGGCTTTGCTTGTTGATGCTGTTGGTACTCTCCTTGTTCCCGCTCAACCTACTGCTCAGATATATAAGAATATTGGAGAGAAGTACGGAGTGGAGTACTCGGAGGCTGAGATACTTACTAGATACAGAAGAGCTTATCAGAAACCATGGGGTGGATCTCATCTTAGATATGTAAACGATGCAAGACCTTTCTGGCAGTATATAGTGACTGCATCAACAGGCTGCTCGGATTCACAGTACTTTGAAGAGCTTTACAGCTATTTTACTACAGAACAGGCGTGGAAGTTATGTGATCCAGATGCAGGGAAAGTGTTTAAGGCTATTAAAGAAGCGGGTGTAAAAGTTGCAATAGTCTCCAACTTCGATACTCGGTTAAGACCTCTCCTACGTGCATTGAGATGTGAAGATTGGTTTGATGCTGTAGCTGTTTCAGCAGAAGTTGAAGCGGAAAAACCAAACCCGACTATCTTCTTAAAAGCTTGTGAGTTATTAGAAGTGAATCCCGAGGATGCGGTTCATGTAGGAGATGACCGTAGGAATGATGTATGGGGAGCTAGAGACGCAGGCTGTGACGCTTGGCTCTGGGGAAGTGAAGTTACGTCATTTAAACAGGTTGCTCAACGGATAGGAGTGAAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

290

Amino Acids

32.31

Weight (kDa)

5.91

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	78 - 266	1.2e-23	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	176 - 268	6.5e-15	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	228 - 281	8.6e-09	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41250
fragaria_vesca	FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490
malus_domestica	MD12G1093300.v1.1 MD14G1085300.v1.1
prunus_persica	Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1
pyrus_communis	pycom12g07860 pycom14g07490
rosa_chinensis	RchiOBHm_Chr2g0125431
rosa_laevigata	RLG00000018866
rosa_multiflora	Rmu_sc0005508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118000
rosa_rugosa	Rorug02G0257400
rosa_samantha	Rh2AG316300 Rh2BG323800 Rh2CG306000 Rh2DG342400
rosa_wichuraiana	Rw2G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	383
AccBSI	CCGCTC	1 cut(s)	275
AccII	CGCG	1 cut(s)	77
AciI	CCGC	6 cut(s)	129, 140, 273, 563, 677, 743
AclWI	GGATC	5 cut(s)	75, 80, 113, 394, 518
AfaI	GTAC	4 cut(s)	259, 317, 329, 470
AfiI	CCNNNNNNNGG	2 cut(s)	383, 533
AgsI	TTSAA	3 cut(s)	184, 476, 674
AluBI	AGCT	6 cut(s)	365, 481, 489, 656, 710, 785
AluI	AGCT	6 cut(s)	365, 481, 489, 656, 710, 785
Alw26I	GTCTC	2 cut(s)	589, 783
AlwI	GGATC	5 cut(s)	75, 80, 113, 394, 518
Ama87I	CYCGRG	1 cut(s)	734
ApeKI	GCWGC	1 cut(s)	453
AsuHPI	GGTGA	1 cut(s)	230
AvaI	CYCGRG	1 cut(s)	734
BarI	GAAGNNNNNNTAC	2 cut(s)	811, 843
BbvI	GCAGC	1 cut(s)	440
BceAI	ACGGC	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	589, 783
BfaI	CTAG	3 cut(s)	153, 351, 786
BfmI	CTRYAG	2 cut(s)	498, 651
BglII	AGATCT	1 cut(s)	206
BisI	GCNGC	1 cut(s)	454
BlpI	GCTNAGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	455
BmcAI	AGTACT	2 cut(s)	329, 470
BmeT110I	CYCGRG	1 cut(s)	734
BmsI	GCATC	6 cut(s)	238, 400, 452, 520, 637, 730
BplI	GAGNNNNNCTC	2 cut(s)	78, 110
Bpu1102I	GCTNAGC	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	377, 735
BsaWI	WCCGGW	2 cut(s)	44, 83
BsaXI	ACNNNNNCTCC	1 cut(s)	852
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 533
Bse3DI	GCAATG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	377, 735
BseGI	GGATG	2 cut(s)	148, 745
BseLI	CCNNNNNNNGG	2 cut(s)	383, 533
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	3 cut(s)	109, 302, 330
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	2 cut(s)	45, 84
BslI	CCNNNNNNNGG	2 cut(s)	383, 533
BsmAI	GTCTC	2 cut(s)	589, 783
BsmBI	CGTCTC	1 cut(s)	783
BsoBI	CYCGRG	1 cut(s)	734
Bsp143I	GATC	7 cut(s)	67, 72, 105, 206, 222, 386, 523
Bsp1720I	GCTNAGC	1 cut(s)	95
Bsp19I	CCATGG	1 cut(s)	377
Bsp68I	TCGCGA	1 cut(s)	77
BspACI	CCGC	6 cut(s)	129, 140, 273, 563, 677, 743
BspCNI	CTCAG	3 cut(s)	108, 301, 331
BspFNI	CGCG	1 cut(s)	77
BspPI	GGATC	5 cut(s)	75, 80, 113, 394, 518
BspQI	GCTCTTC	2 cut(s)	355, 471
BsrBI	CCGCTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	377, 735
BssMI	GATC	7 cut(s)	67, 72, 105, 206, 222, 386, 523
BssT1I	CCWWGG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	468, 764
Bst6I	CTCTTC	3 cut(s)	44, 355, 471
BstBAI	YACGTR	1 cut(s)	620
BstC8I	GCNNGC	1 cut(s)	796
BstDEI	CTNAG	4 cut(s)	95, 288, 339, 395
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	148, 745
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	7 cut(s)	70, 75, 108, 209, 225, 389, 526
BstMAI	GTCTC	2 cut(s)	589, 783
BstMBI	GATC	7 cut(s)	67, 72, 105, 206, 222, 386, 523
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 662, 791
BstSFI	CTRYAG	2 cut(s)	498, 651
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	440
BstX2I	RGATCY	3 cut(s)	105, 206, 386
BstYI	RGATCY	3 cut(s)	105, 206, 386
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	148, 745
BtuMI	TCGCGA	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	796
CseI	GACGC	2 cut(s)	800, 812
Csp6I	GTAC	4 cut(s)	258, 316, 328, 469
CviAII	CATG	3 cut(s)	59, 378, 749
CviQI	GTAC	4 cut(s)	258, 316, 328, 469
DdeI	CTNAG	4 cut(s)	95, 288, 339, 395
DpnI	GATC	7 cut(s)	69, 74, 107, 208, 224, 388, 525
DpnII	GATC	7 cut(s)	67, 72, 105, 206, 222, 386, 523
DraI	TTTAAA	1 cut(s)	838
Eam1104I	CTCTTC	3 cut(s)	44, 355, 471
EarI	CTCTTC	3 cut(s)	44, 355, 471
Eco130I	CCWWGG	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	734
EcoT14I	CCWWGG	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	783
FaeI	CATG	3 cut(s)	62, 381, 752
FatI	CATG	3 cut(s)	58, 377, 748
FauI	CCCGC	2 cut(s)	280, 556
Fnu4HI	GCNGC	1 cut(s)	454
FokI	GGATG	2 cut(s)	155, 752
Fsp4HI	GCNGC	1 cut(s)	454
FspBI	CTAG	3 cut(s)	153, 351, 786
GluI	GCNGC	1 cut(s)	454
HapII	CCGG	2 cut(s)	45, 84
HgaI	GACGC	2 cut(s)	800, 812
Hin1II	CATG	3 cut(s)	62, 381, 752
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	4 cut(s)	12, 149, 461, 730
HpaII	CCGG	2 cut(s)	45, 84
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	6 cut(s)	72, 291, 334, 372, 460, 872
Hpy188III	TCNNGA	4 cut(s)	16, 76, 527, 734
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	2 cut(s)	28, 31
HpyAV	CCTTC	2 cut(s)	13, 859
HpyCH4III	ACNGT	2 cut(s)	468, 764
HpyCH4IV	ACGT	2 cut(s)	619, 830
HpyCH4V	TGCA	5 cut(s)	413, 443, 533, 578, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 662, 791
HpyF3I	CTNAG	4 cut(s)	95, 288, 339, 395
HpySE526I	ACGT	2 cut(s)	619, 830
Hsp92II	CATG	3 cut(s)	62, 381, 752
Kzo9I	GATC	7 cut(s)	67, 72, 105, 206, 222, 386, 523
LguI	GCTCTTC	2 cut(s)	355, 471
LmnI	GCTCC	2 cut(s)	86, 782
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	6 cut(s)	238, 400, 452, 520, 637, 730
MaeI	CTAG	3 cut(s)	153, 351, 786
MaeII	ACGT	2 cut(s)	619, 830
MaeIII	GTNAC	3 cut(s)	436, 800, 826
MalI	GATC	7 cut(s)	69, 74, 107, 208, 224, 388, 525
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	7 cut(s)	67, 72, 105, 206, 222, 386, 523
MboII	GAAGA	7 cut(s)	31, 117, 206, 372, 488, 647, 691
MflI	RGATCY	3 cut(s)	105, 206, 386
MmeI	TCCRAC	2 cut(s)	83, 612
MnlI	CCTC	4 cut(s)	121, 328, 621, 730
MseI	TTAA	5 cut(s)	546, 555, 605, 704, 837
MslI	CAYNNNNRTG	1 cut(s)	628
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	2 cut(s)	45, 84
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	137, 662, 791
NcoI	CCATGG	1 cut(s)	377
NdeII	GATC	7 cut(s)	67, 72, 105, 206, 222, 386, 523
NlaIII	CATG	3 cut(s)	62, 381, 752
NmuCI	GTSAC	2 cut(s)	436, 800
NruI	TCGCGA	1 cut(s)	77
PciSI	GCTCTTC	2 cut(s)	355, 471
PfeI	GAWTC	4 cut(s)	12, 149, 461, 730
PflMI	CCANNNNNTGG	1 cut(s)	383
PkrI	GCNGC	1 cut(s)	455
Ppu21I	YACGTR	1 cut(s)	620
PsuI	RGATCY	3 cut(s)	105, 206, 386
RruI	TCGCGA	1 cut(s)	77
RsaI	GTAC	4 cut(s)	259, 317, 329, 470
RsaNI	GTAC	4 cut(s)	258, 316, 328, 469
RseI	CAYNNNNRTG	1 cut(s)	628
SapI	GCTCTTC	2 cut(s)	355, 471
SaqAI	TTAA	5 cut(s)	546, 555, 605, 704, 837
SatI	GCNGC	1 cut(s)	454
Sau3AI	GATC	7 cut(s)	67, 72, 105, 206, 222, 386, 523
ScaI	AGTACT	2 cut(s)	329, 470
SfaNI	GCATC	6 cut(s)	238, 400, 452, 520, 637, 730
SfcI	CTRYAG	2 cut(s)	498, 651
SmiMI	CAYNNNNRTG	1 cut(s)	628
SsiI	CCGC	6 cut(s)	129, 140, 273, 563, 677, 743
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	3 cut(s)	153, 351, 786
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	2 cut(s)	468, 764
TaiI	ACGT	2 cut(s)	622, 833
TaqI	TCGA	1 cut(s)	594
TatI	WGTACW	2 cut(s)	327, 468
TfiI	GAWTC	4 cut(s)	12, 149, 461, 730
Tru1I	TTAA	5 cut(s)	546, 555, 605, 704, 837
Tru9I	TTAA	5 cut(s)	546, 555, 605, 704, 837
TseFI	GTSAC	2 cut(s)	436, 800
TseI	GCWGC	1 cut(s)	453
Tsp45I	GTSAC	2 cut(s)	436, 800
TspDTI	ATGAA	3 cut(s)	162, 207, 737
TspGWI	ACGGA	4 cut(s)	80, 180, 333, 868
Van91I	CCANNNNNTGG	1 cut(s)	383
XspI	CTAG	3 cut(s)	153, 351, 786
ZrmI	AGTACT	2 cut(s)	329, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.