Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007794

Physical Location & Seq

Genomic Coordinates Reverse (-)

48929795 .. 48933247

Gene Structure 3453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCGACTGGGAGTGGAAGGAGACGAATGCGCTTCTCACGGCCGGAACACCAATTTTAGGATTCTCAAATGTTCAGCTGCGTTATTCGTCGTCTGCTGCTGGGATTGGGTCGAGGCAGATAGACACGGGGGCGTGAAAGATTATGAAGACTATAGGAGGTCTCTTTACGGTGAAATCACGCACAAGGCTCTGCTTGTTGATGCTGTAGGCACCCTTGTTGTTCCTTCTCAGCCAATGGCTCAGATATATAGGAAGATAGGGGAGAAGTATGGGGTGGAGTACTCAGAGGCTGAGATTTTGAACAGATACAGACGGGCTTACCAGCAGCCTTGGGGCAGATCTCGTCGCAGATATGTAAATGATGGGAGACCCTTTTGGCAACATATCGTCCGTTCTTCTACTGGTTGTTCAGATTCTCAGTACTTTGAAGAACTTTATAACTACTATACAACTAACAAGGCTTGGCACCTCTGTGATCCTGATGCTGAGAAAGTGTTTGAAGCTCTAAGAAAAGCAGGTGTCAAAGTAGCGGTTGTGTCAAATTTTGATACCCGGTTAAGACCTCTTTTGCAGGCTCTAAATTGTGAACATTGGTTTGATGCAGTAGCAGTGTCAGCAGAAGTAGAAGCCGAGAAGCCAAATCCCACAATATTTATTAAAGCTTGTGAGTTATTAGGGGTAAAACCTGAGGATGCTGTGCATGTGGGGGATGATCGTAGGAATGATATATGGGGTGCTAGAGATGCAGGTTGTGATGCTTGGCTTTGGGGAAGTGATGTTCATTCCTTTAAGGAGGTGGCTCAAAAGGATAGGAGTCCACGTTTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

276

Amino Acids

31.67

Weight (kDa)

6.46

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	62 - 250	6.6e-25	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	70 - 252	1.1e-16	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	212 - 274	5.6e-10	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41250
fragaria_vesca	FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490
malus_domestica	MD12G1093300.v1.1 MD14G1085300.v1.1
prunus_persica	Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1
pyrus_communis	pycom12g07860 pycom14g07490
rosa_chinensis	RchiOBHm_Chr2g0125431
rosa_laevigata	RLG00000018866
rosa_multiflora	Rmu_sc0005508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118000
rosa_rugosa	Rorug02G0257400
rosa_samantha	Rh2AG316300 Rh2BG323800 Rh2CG306000 Rh2DG342400
rosa_wichuraiana	Rw2G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AarI	CACCTGC	1 cut(s)	506
Acc36I	ACCTGC	2 cut(s)	506, 737
AccB1I	GGYRCC	2 cut(s)	209, 465
AciI	CCGC	1 cut(s)	530
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	541
AfaI	GTAC	2 cut(s)	281, 422
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	3 cut(s)	301, 428, 500
AleI	CACNNNNGTG	1 cut(s)	471
AloI	GAACNNNNNNTCC	2 cut(s)	762, 794
AluBI	AGCT	3 cut(s)	77, 503, 662
AluI	AGCT	3 cut(s)	77, 503, 662
Alw26I	GTCTC	3 cut(s)	15, 165, 361
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	3 cut(s)	77, 96, 325
ApoI	RAATTY	1 cut(s)	541
AspLEI	GCGC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	553
AsuHPI	GGTGA	1 cut(s)	182
AxyI	CCTNAGG	1 cut(s)	687
BanI	GGYRCC	2 cut(s)	209, 465
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	64, 83, 337
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	3 cut(s)	15, 165, 361
BfaI	CTAG	1 cut(s)	738
BfmI	CTRYAG	2 cut(s)	151, 204
BfuAI	ACCTGC	2 cut(s)	506, 737
BglII	AGATCT	1 cut(s)	338
BisI	GCNGC	3 cut(s)	78, 97, 326
BlsI	GCNGC	3 cut(s)	79, 98, 327
BmcAI	AGTACT	2 cut(s)	281, 422
Bme1390I	CCNGG	1 cut(s)	553
BmiI	GGNNCC	2 cut(s)	211, 467
BmrFI	CCNGG	1 cut(s)	553
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	6 cut(s)	190, 472, 589, 682, 733, 745
BmuI	ACTGGG	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	553
BsaI	GGTCTC	2 cut(s)	165, 361
BsaJI	CCNNGG	1 cut(s)	329
BsaXI	ACNNNNNCTCC	1 cut(s)	805
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse1I	ACTGG	2 cut(s)	12, 406
Bse21I	CCTNAGG	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	2 cut(s)	697, 715
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMII	CTCAG	7 cut(s)	242, 254, 282, 297, 431, 477, 678
BseNI	ACTGG	2 cut(s)	12, 406
BseX3I	CGGCCG	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	64, 83, 337
BseYI	CCCAGC	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	42
BshNI	GGYRCC	2 cut(s)	209, 465
BsiEI	CGRYCG	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	43, 553
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	3 cut(s)	15, 165, 361
BsmBI	CGTCTC	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	42
Bso31I	GGTCTC	2 cut(s)	165, 361
Bsp143I	GATC	3 cut(s)	338, 475, 712
BspACI	CCGC	1 cut(s)	530
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	7 cut(s)	241, 253, 283, 296, 430, 478, 679
BspLI	GGNNCC	2 cut(s)	211, 467
BspMI	ACCTGC	2 cut(s)	506, 737
BspPI	GGATC	1 cut(s)	470
BspT107I	GGYRCC	2 cut(s)	209, 465
BspTNI	GGTCTC	2 cut(s)	165, 361
BsrI	ACTGG	2 cut(s)	12, 406
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	3 cut(s)	338, 475, 712
BssT1I	CCWWGG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	8 cut(s)	228, 240, 283, 291, 417, 486, 506, 687
BstF5I	GGATG	2 cut(s)	697, 715
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	3 cut(s)	341, 478, 715
BstMAI	GTCTC	3 cut(s)	15, 165, 361
BstMBI	GATC	3 cut(s)	338, 475, 712
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	614, 743
BstNSI	RCATGY	1 cut(s)	704
BstSCI	CCNGG	1 cut(s)	551
BstSFI	CTRYAG	2 cut(s)	151, 204
BstV1I	GCAGC	3 cut(s)	64, 83, 337
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BstZI	CGGCCG	1 cut(s)	40
Bsu36I	CCTNAGG	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	697, 715
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	1 cut(s)	615
BveI	ACCTGC	2 cut(s)	506, 737
Cac8I	GCNNGC	1 cut(s)	573
CaiI	CAGNNNCTG	1 cut(s)	290
CfoI	GCGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	280, 421
CviAII	CATG	1 cut(s)	701
CviQI	GTAC	2 cut(s)	280, 421
DdeI	CTNAG	8 cut(s)	228, 240, 283, 291, 417, 486, 506, 687
DpnI	GATC	3 cut(s)	340, 477, 714
DpnII	GATC	3 cut(s)	338, 475, 712
EaeI	YGGCCR	1 cut(s)	40
EagI	CGGCCG	1 cut(s)	40
EclXI	CGGCCG	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	329
Eco31I	GGTCTC	2 cut(s)	165, 361
Eco52I	CGGCCG	1 cut(s)	40
Eco81I	CCTNAGG	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	1 cut(s)	704
FatI	CATG	1 cut(s)	700
Fnu4HI	GCNGC	3 cut(s)	78, 97, 326
FokI	GGATG	2 cut(s)	704, 722
Fsp4HI	GCNGC	3 cut(s)	78, 97, 326
FspBI	CTAG	1 cut(s)	738
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	3 cut(s)	78, 97, 326
GsaI	CCCAGC	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	43, 553
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	704
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	3 cut(s)	61, 413, 814
HpaII	CCGG	2 cut(s)	43, 553
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	587, 818
Hpy188I	TCNGA	3 cut(s)	243, 286, 412
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	2 cut(s)	587, 818
Hpy99I	CGWCG	2 cut(s)	92, 348
HpyAV	CCTTC	2 cut(s)	11, 234
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	820
HpyCH4V	TGCA	4 cut(s)	571, 602, 700, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	614, 743
HpyF3I	CTNAG	8 cut(s)	228, 240, 283, 291, 417, 486, 506, 687
HpySE526I	ACGT	1 cut(s)	820
Hsp92II	CATG	1 cut(s)	704
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	338, 475, 712
Lsp1109I	GCAGC	3 cut(s)	64, 83, 337
LweI	GCATC	6 cut(s)	190, 472, 589, 682, 733, 745
MaeI	CTAG	1 cut(s)	738
MaeII	ACGT	1 cut(s)	820
MalI	GATC	3 cut(s)	340, 477, 714
MboI	GATC	3 cut(s)	338, 475, 712
MboII	GAAGA	4 cut(s)	158, 265, 387, 440
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	3 cut(s)	52, 541, 580
MlyI	GAGTC	1 cut(s)	823
MnlI	CCTC	7 cut(s)	106, 150, 280, 479, 573, 682, 787
MseI	TTAA	4 cut(s)	557, 657, 789, 829
MslI	CAYNNNNRTG	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	2 cut(s)	43, 553
MspR9I	CCNGG	1 cut(s)	553
Mva1269I	GAATGC	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	614, 743
NciI	CCSGG	1 cut(s)	553
NdeII	GATC	3 cut(s)	338, 475, 712
NlaIII	CATG	1 cut(s)	704
NlaIV	GGNNCC	2 cut(s)	211, 467
NmeAIII	GCCGAG	1 cut(s)	655
NspI	RCATGY	1 cut(s)	704
OliI	CACNNNNGTG	1 cut(s)	471
PaqCI	CACCTGC	1 cut(s)	506
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	61, 413
PkrI	GCNGC	3 cut(s)	79, 98, 327
PleI	GAGTC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	822
PsiI	TTATAA	1 cut(s)	438
PspFI	CCCAGC	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	211, 467
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	2 cut(s)	281, 422
RsaNI	GTAC	2 cut(s)	280, 421
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	4 cut(s)	557, 657, 789, 829
SatI	GCNGC	3 cut(s)	78, 97, 326
Sau3AI	GATC	3 cut(s)	338, 475, 712
ScaI	AGTACT	2 cut(s)	281, 422
SchI	GAGTC	1 cut(s)	823
ScrFI	CCNGG	1 cut(s)	553
SfaNI	GCATC	6 cut(s)	190, 472, 589, 682, 733, 745
SfcI	CTRYAG	2 cut(s)	151, 204
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	3 cut(s)	52, 541, 580
SsiI	CCGC	1 cut(s)	530
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	1 cut(s)	738
StyD4I	CCNGG	1 cut(s)	551
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	1 cut(s)	823
TaqI	TCGA	1 cut(s)	111
TasI	AATT	3 cut(s)	52, 541, 580
TatI	WGTACW	2 cut(s)	279, 420
TfiI	GAWTC	2 cut(s)	61, 413
Tru1I	TTAA	4 cut(s)	557, 657, 789, 829
Tru9I	TTAA	4 cut(s)	557, 657, 789, 829
TscAI	CASTG	1 cut(s)	615
TseI	GCWGC	3 cut(s)	77, 96, 325
TspDTI	ATGAA	2 cut(s)	159, 770
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	615
XapI	RAATTY	1 cut(s)	541
XceI	RCATGY	1 cut(s)	704
XspI	CTAG	1 cut(s)	738
ZrmI	AGTACT	2 cut(s)	281, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.