Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007794

Physical Location & Seq

Genomic Coordinates Reverse (-)

10363347 .. 10366621

Gene Structure 3275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1085300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAAGGATGTCAGAGCTGAGTCAGACCCAAAAGAAAAGCTGAAATCCCAACATACAAAACCAAGTGCGCAGGAGGAGACACCCTCAAATGAAGCTTCAGCAATGGCGTTAATGGCAACCAGAACAAACTTCTTTAGGCTCCTCACAACAAAAGCACCAATTTTGGGATCTGGGTCTTGCTCCAATGGCCTCAAGCGACCGGTTCGGGTTGACCGGGGCGGTGGAGCCGGGTTGACGTCGCCGTATTCCACCTCTGCGGTGGCGCAGCAGCCAGAGTCCGGGATCATTGGGTCGAGGCCACCGCACATGGGGTTGGAGATATTGGGTGTGAAAGATTACGAAGATTATAGGAGGTCTTTGTATGGTGAAATCACTCACAAGGCTTTGCTTGTTGATGCTGTTGGTACCCTTGTTGTTCCTTCCCAACCAATGGCTCAGATATATAGGAAGATAGGCGAGAAATATGGAGTGGAGTACTCAGAGGCCGAGATTTTAAACAGATACAGACGAGCTTACGAGCAGCCTTGGGGAAGATCTCGTCTCAGATATGTAAATGATGGGAGACCCTTCTGGCAATATATAGTCAGTTCTTCCACTGGCTGCTCAGATTCTCAGTACTTTGAAGAGCTTTATAACTACTATACGACTGACAAGGCTTGGCACCTCTGTGATCCTGATGCTGAGAGAGTGTTTAAAGCTCTGAGGAAAGCAGGTGTCAAAGTAGCTGTTGTGTCAAATTTTGATACCCGATTAAGACCTGTTTTACATGCTCTACATTGTGAACAATGGTTTGATGCAATAGCAGTGTCAGCTGAAGTTGAAGCAGAGAAGCCAAATCCAACAATATTTCTTAAAGCTTGTGAGTTATTGGGAGTAAAACCTGAGGATGCTGTGCACGTAGGTGATGATCGTAGGAATGATATATGGGGTGCTAGAGATGCAGGCTGTGATGCTTGGCTTTGGGGAAGTGATGTTCACTCCTTCAAGGAGGTGGCTCAGAGGGTAGGGGTCCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

340

Amino Acids

37.9

Weight (kDa)

7.11

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	127 - 315	4.2e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	142 - 317	1e-15	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	277 - 332	2.9e-09	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41250
fragaria_vesca	FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490
malus_domestica	MD12G1093300.v1.1 MD14G1085300.v1.1
prunus_persica	Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1
pyrus_communis	pycom12g07860 pycom14g07490
rosa_chinensis	RchiOBHm_Chr2g0125431
rosa_laevigata	RLG00000018866
rosa_multiflora	Rmu_sc0005508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118000
rosa_rugosa	Rorug02G0257400
rosa_samantha	Rh2AG316300 Rh2BG323800 Rh2CG306000 Rh2DG342400
rosa_wichuraiana	Rw2G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AarI	CACCTGC	1 cut(s)	701
AatII	GACGTC	1 cut(s)	239
Acc16I	TGCGCA	1 cut(s)	69
Acc36I	ACCTGC	1 cut(s)	701
Acc65I	GGTACC	1 cut(s)	404
AccB1I	GGYRCC	2 cut(s)	404, 660
AccB7I	CCANNNNNTGG	1 cut(s)	430
AciI	CCGC	3 cut(s)	219, 257, 302
AclWI	GGATC	3 cut(s)	175, 290, 665
AcsI	RAATTY	1 cut(s)	736
AcuI	CTGAAG	2 cut(s)	81, 834
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	3 cut(s)	406, 476, 617
AfiI	CCNNNNNNNGG	4 cut(s)	164, 278, 308, 430
AgeI	ACCGGT	1 cut(s)	199
AgsI	TTSAA	3 cut(s)	623, 821, 985
AleI	CACNNNNGTG	2 cut(s)	666, 900
AloI	GAACNNNNNNTCC	2 cut(s)	957, 989
AluBI	AGCT	9 cut(s)	17, 40, 95, 512, 628, 698, 725, 812, 857
AluI	AGCT	9 cut(s)	17, 40, 95, 512, 628, 698, 725, 812, 857
Alw21I	GWGCWC	1 cut(s)	897
Alw26I	GTCTC	3 cut(s)	71, 545, 556
Alw44I	GTGCAC	1 cut(s)	893
AlwI	GGATC	3 cut(s)	175, 290, 665
AoxI	GGCC	3 cut(s)	187, 296, 483
ApaLI	GTGCAC	1 cut(s)	893
ApeKI	GCWGC	4 cut(s)	265, 268, 520, 600
ApoI	RAATTY	1 cut(s)	736
AsiGI	ACCGGT	1 cut(s)	199
Asp718I	GGTACC	1 cut(s)	404
AspLEI	GCGC	2 cut(s)	70, 265
AspS9I	GGNCC	1 cut(s)	1009
AsuC2I	CCSGG	3 cut(s)	215, 229, 280
AsuHPI	GGTGA	2 cut(s)	377, 914
AvaII	GGWCC	1 cut(s)	1009
AxyI	CCTNAGG	1 cut(s)	882
BaeGI	GKGCMC	1 cut(s)	897
BaeI	ACNNNNGTAYC	2 cut(s)	396, 429
BanI	GGYRCC	2 cut(s)	404, 660
Bbv12I	GWGCWC	1 cut(s)	897
BbvI	GCAGC	4 cut(s)	277, 280, 532, 587
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	1 cut(s)	226
BcnI	CCSGG	3 cut(s)	215, 229, 280
BcoDI	GTCTC	3 cut(s)	71, 545, 556
BfaI	CTAG	1 cut(s)	933
BfuAI	ACCTGC	1 cut(s)	701
BglII	AGATCT	1 cut(s)	533
BisI	GCNGC	4 cut(s)	266, 269, 521, 601
BlsI	GCNGC	4 cut(s)	267, 270, 522, 602
BmcAI	AGTACT	2 cut(s)	476, 617
Bme1390I	CCNGG	3 cut(s)	215, 229, 280
Bme18I	GGWCC	1 cut(s)	1009
BmgT120I	GGNCC	1 cut(s)	1009
BmiI	GGNNCC	5 cut(s)	140, 226, 406, 662, 1010
BmrFI	CCNGG	3 cut(s)	215, 229, 280
BmsI	GCATC	6 cut(s)	385, 667, 784, 877, 928, 940
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	3 cut(s)	215, 229, 280
BsaAI	YACGTR	1 cut(s)	898
BsaHI	GRCGYC	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	2 cut(s)	214, 524
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 278, 308, 430
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	601
Bse21I	CCTNAGG	1 cut(s)	882
Bse3DI	GCAATG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	214, 524
BseGI	GGATG	2 cut(s)	13, 892
BseLI	CCNNNNNNNGG	4 cut(s)	164, 278, 308, 430
BseMI	GCAATG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	2 cut(s)	89, 131
BseSI	GKGCMC	1 cut(s)	897
BseXI	GCAGC	4 cut(s)	277, 280, 532, 587
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	3 cut(s)	189, 298, 485
BshNI	GGYRCC	2 cut(s)	404, 660
BshTI	ACCGGT	1 cut(s)	199
BsiEI	CGRYCG	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	897
BsiSI	CCGG	4 cut(s)	200, 214, 228, 279
BslI	CCNNNNNNNGG	4 cut(s)	164, 278, 308, 430
BsmAI	GTCTC	3 cut(s)	71, 545, 556
BsmBI	CGTCTC	1 cut(s)	545
BsnI	GGCC	3 cut(s)	189, 298, 485
Bso31I	GGTCTC	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp143I	GATC	5 cut(s)	167, 282, 533, 670, 907
BspACI	CCGC	3 cut(s)	219, 257, 302
BspANI	GGCC	3 cut(s)	189, 298, 485
BspLI	GGNNCC	5 cut(s)	140, 226, 406, 662, 1010
BspMI	ACCTGC	1 cut(s)	701
BspPI	GGATC	3 cut(s)	175, 290, 665
BspQI	GCTCTTC	1 cut(s)	618
BspT107I	GGYRCC	2 cut(s)	404, 660
BspTNI	GGTCTC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	601
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	214, 524
BssMI	GATC	5 cut(s)	167, 282, 533, 670, 907
BssNI	GRCGYC	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	524
Bst6I	CTCTTC	1 cut(s)	618
BstACI	GRCGYC	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	898
BstC8I	GCNNGC	1 cut(s)	943
BstF5I	GGATG	2 cut(s)	13, 892
BstHHI	GCGC	2 cut(s)	70, 265
BstKTI	GATC	5 cut(s)	170, 285, 536, 673, 910
BstMAI	GTCTC	3 cut(s)	71, 545, 556
BstMBI	GATC	5 cut(s)	167, 282, 533, 670, 907
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 186, 809, 938
BstNSI	RCATGY	1 cut(s)	770
BstSCI	CCNGG	3 cut(s)	213, 227, 278
BstSLI	GKGCMC	1 cut(s)	897
BstV1I	GCAGC	4 cut(s)	277, 280, 532, 587
BstX2I	RGATCY	2 cut(s)	167, 533
BstYI	RGATCY	2 cut(s)	167, 533
Bsu36I	CCTNAGG	1 cut(s)	882
BsuRI	GGCC	3 cut(s)	189, 298, 485
BtsCI	GGATG	2 cut(s)	13, 892
BtsI	GCAGTG	1 cut(s)	810
BtsIMutI	CAGTG	2 cut(s)	594, 810
BveI	ACCTGC	1 cut(s)	701
Cac8I	GCNNGC	1 cut(s)	943
CfoI	GCGC	2 cut(s)	70, 265
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	1009
Csp6I	GTAC	3 cut(s)	405, 475, 616
CspAI	ACCGGT	1 cut(s)	199
CviAII	CATG	3 cut(s)	307, 767, 1013
CviQI	GTAC	3 cut(s)	405, 475, 616
DpnI	GATC	5 cut(s)	169, 284, 535, 672, 909
DpnII	GATC	5 cut(s)	167, 282, 533, 670, 907
DraI	TTTAAA	2 cut(s)	495, 694
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	524
Eco31I	GGTCTC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	1009
Eco57I	CTGAAG	2 cut(s)	81, 834
Eco81I	CCTNAGG	1 cut(s)	882
EcoT14I	CCWWGG	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	524
Esp3I	CGTCTC	1 cut(s)	545
FaeI	CATG	3 cut(s)	310, 770, 1016
FatI	CATG	3 cut(s)	306, 766, 1012
Fnu4HI	GCNGC	4 cut(s)	266, 269, 521, 601
FokI	GGATG	2 cut(s)	20, 899
Fsp4HI	GCNGC	4 cut(s)	266, 269, 521, 601
FspBI	CTAG	1 cut(s)	933
FspI	TGCGCA	1 cut(s)	69
GlaI	GCGC	2 cut(s)	69, 264
GluI	GCNGC	4 cut(s)	266, 269, 521, 601
HaeIII	GGCC	3 cut(s)	189, 298, 485
HapII	CCGG	4 cut(s)	200, 214, 228, 279
HhaI	GCGC	2 cut(s)	70, 265
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	3 cut(s)	310, 770, 1016
Hin6I	GCGC	2 cut(s)	68, 263
HinP1I	GCGC	2 cut(s)	68, 263
HincII	GTYRAC	2 cut(s)	211, 234
HindII	GTYRAC	2 cut(s)	211, 234
HindIII	AAGCTT	2 cut(s)	93, 855
HinfI	GANTC	3 cut(s)	20, 275, 608
HpaII	CCGG	4 cut(s)	200, 214, 228, 279
HphI	GGTGA	2 cut(s)	377, 914
Hpy166II	GTNNAC	5 cut(s)	211, 234, 782, 895, 976
Hpy188I	TCNGA	8 cut(s)	14, 25, 438, 481, 545, 607, 702, 999
Hpy188III	TCNNGA	1 cut(s)	674
Hpy8I	GTNNAC	5 cut(s)	211, 234, 782, 895, 976
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	3 cut(s)	429, 577, 991
HpyCH4IV	ACGT	2 cut(s)	236, 897
HpyCH4V	TGCA	3 cut(s)	797, 895, 941
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 186, 809, 938
HpySE526I	ACGT	2 cut(s)	236, 897
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	3 cut(s)	310, 770, 1016
HspAI	GCGC	2 cut(s)	68, 263
KpnI	GGTACC	1 cut(s)	408
Kzo9I	GATC	5 cut(s)	167, 282, 533, 670, 907
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	3 cut(s)	144, 185, 224
Lsp1109I	GCAGC	4 cut(s)	277, 280, 532, 587
LweI	GCATC	6 cut(s)	385, 667, 784, 877, 928, 940
MaeI	CTAG	1 cut(s)	933
MaeII	ACGT	2 cut(s)	236, 897
MalI	GATC	5 cut(s)	169, 284, 535, 672, 909
MboI	GATC	5 cut(s)	167, 282, 533, 670, 907
MboII	GAAGA	5 cut(s)	353, 460, 543, 582, 635
MflI	RGATCY	2 cut(s)	167, 533
MhlI	GDGCHC	1 cut(s)	897
MluCI	AATT	2 cut(s)	159, 736
MlyI	GAGTC	2 cut(s)	29, 284
MmeI	TCCRAC	2 cut(s)	294, 863
MseI	TTAA	6 cut(s)	110, 494, 693, 752, 852, 1018
MslI	CAYNNNNRTG	2 cut(s)	666, 900
MspA1I	CMGCKG	1 cut(s)	812
MspI	CCGG	4 cut(s)	200, 214, 228, 279
MspR9I	CCNGG	3 cut(s)	215, 229, 280
MwoI	GCNNNNNNNGC	4 cut(s)	113, 186, 809, 938
NciI	CCSGG	3 cut(s)	215, 229, 280
NdeII	GATC	5 cut(s)	167, 282, 533, 670, 907
NlaIII	CATG	3 cut(s)	310, 770, 1016
NlaIV	GGNNCC	5 cut(s)	140, 226, 406, 662, 1010
NmeAIII	GCCGAG	1 cut(s)	511
NsbI	TGCGCA	1 cut(s)	69
NspI	RCATGY	1 cut(s)	770
OliI	CACNNNNGTG	2 cut(s)	666, 900
PaqCI	CACCTGC	1 cut(s)	701
PciSI	GCTCTTC	1 cut(s)	618
PfeI	GAWTC	1 cut(s)	608
PflMI	CCANNNNNTGG	1 cut(s)	430
PfoI	TCCNGGA	1 cut(s)	278
PinAI	ACCGGT	1 cut(s)	199
PkrI	GCNGC	4 cut(s)	267, 270, 522, 602
PleI	GAGTC	2 cut(s)	28, 283
PpsI	GAGTC	2 cut(s)	28, 283
Ppu21I	YACGTR	1 cut(s)	898
PsiI	TTATAA	1 cut(s)	633
PspN4I	GGNNCC	5 cut(s)	140, 226, 406, 662, 1010
PspPI	GGNCC	1 cut(s)	1009
PsuI	RGATCY	2 cut(s)	167, 533
PvuII	CAGCTG	1 cut(s)	812
RsaI	GTAC	3 cut(s)	406, 476, 617
RsaNI	GTAC	3 cut(s)	405, 475, 616
RseI	CAYNNNNRTG	2 cut(s)	666, 900
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	6 cut(s)	110, 494, 693, 752, 852, 1018
SatI	GCNGC	4 cut(s)	266, 269, 521, 601
Sau3AI	GATC	5 cut(s)	167, 282, 533, 670, 907
Sau96I	GGNCC	1 cut(s)	1009
ScaI	AGTACT	2 cut(s)	476, 617
SchI	GAGTC	2 cut(s)	29, 284
ScrFI	CCNGG	3 cut(s)	215, 229, 280
SduI	GDGCHC	1 cut(s)	897
SfaNI	GCATC	6 cut(s)	385, 667, 784, 877, 928, 940
SinI	GGWCC	1 cut(s)	1009
SmiMI	CAYNNNNRTG	2 cut(s)	666, 900
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	159, 736
SsiI	CCGC	3 cut(s)	219, 257, 302
SspI	AATATT	1 cut(s)	846
SspMI	CTAG	1 cut(s)	933
StyD4I	CCNGG	3 cut(s)	213, 227, 278
StyI	CCWWGG	1 cut(s)	524
TaiI	ACGT	2 cut(s)	239, 900
TaqI	TCGA	1 cut(s)	293
TasI	AATT	2 cut(s)	159, 736
TatI	WGTACW	2 cut(s)	474, 615
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	6 cut(s)	110, 494, 693, 752, 852, 1018
Tru9I	TTAA	6 cut(s)	110, 494, 693, 752, 852, 1018
TscAI	CASTG	2 cut(s)	601, 810
TseI	GCWGC	4 cut(s)	265, 268, 520, 600
TspDTI	ATGAA	2 cut(s)	17, 105
TspRI	CASTG	2 cut(s)	601, 810
Van91I	CCANNNNNTGG	1 cut(s)	430
VneI	GTGCAC	1 cut(s)	893
VpaK11BI	GGWCC	1 cut(s)	1009
XapI	RAATTY	1 cut(s)	736
XceI	RCATGY	1 cut(s)	770
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XspI	CTAG	1 cut(s)	933
ZraI	GACGTC	1 cut(s)	237
ZrmI	AGTACT	2 cut(s)	476, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.