Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007794

Physical Location & Seq

Genomic Coordinates Reverse (-)

8532607 .. 8536289

Gene Structure 3683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCGTTAATGGCAACCAGAACAAACCTGTTTAGGCTCCTCACTACAAAAGCACCGATTTTGGGATCTGGGTCTTCCTCTAATGGCCTCAAGGGACCCGTTCGGGCCGACCGGAGAGGTGGAGCCGTGTCAACTTCGTCGTATTCGACCTCTGCGGTGGCGCAGCAGCCTGAGTCCGGGACCATTGGGTCTAGGCCGCCGCACATGGGGCTGGAGATATTGGGTGTGAAAGATTACGAAGATTATAGAAGGTCTTTGTATGGTGAAATCACTCACAAGGCTTTGCTAGTTGATGCTGTTGGTACCCTTGTTGTTCCTTCCCAGCCAATGGCTCAGATATATAGGAAGATAGGTGAGAAATACGGAGTGGAGTACTCAGAGACGGAGATTTTGAACAGATACAGAAGAGCTTACGAGCAGCCTTGGGGAAGATCTCGTCTCAGATATGTAAATGATGGGAGACCCTTCTGGCAATATATAGTCAGTTCTTCCACTGGCTGTTCCGATTCTCAGTACTTTGAAGAACTTTATAACTACTATACGACTGACAAGGCTTGGCACCTCTGTGATCCTGATGCTGAGAAGGTGTTTGAAGCTCTGAGGAAAGCAGGTGTTAAAGTAGCTGTTGTATCAAATTTTGATACCCGATTAAGGCCTCTTTTACATGCTCTACATTGTGAACATTGGTTTGATGCAGTAGCAGTGTCAGCCGAAGTTCAAGCAGAGAAGCCAAATCCAACAATATTTCTTAAAGCTTGTGAATTATTGGGAGTAAAACCTGAGGATGCTGTGCATGTAGGTGATGATCGTAGGAATGATATATGGGGTGCTAGAGATGCAGGCTGTGATGCTTGGCTTTGGGGAAGTGATGTTCACTCCTTCAAGGAGGTGGCTCAGAGGGTAGGGGTCCAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

306

Amino Acids

34.08

Weight (kDa)

7.08

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41250
fragaria_vesca	FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490
malus_domestica	MD12G1093300.v1.1 MD14G1085300.v1.1
prunus_persica	Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1
pyrus_communis	pycom12g07860 pycom14g07490
rosa_chinensis	RchiOBHm_Chr2g0125431
rosa_laevigata	RLG00000018866
rosa_multiflora	Rmu_sc0005508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118000
rosa_rugosa	Rorug02G0257400
rosa_samantha	Rh2AG316300 Rh2BG323800 Rh2CG306000 Rh2DG342400
rosa_wichuraiana	Rw2G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
AarI	CACCTGC	1 cut(s)	599
AasI	GACNNNNNNGTC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	599
Acc65I	GGTACC	1 cut(s)	302
AccB1I	GGYRCC	2 cut(s)	302, 558
AccB7I	CCANNNNNTGG	1 cut(s)	328
AciI	CCGC	3 cut(s)	155, 197, 200
AclWI	GGATC	2 cut(s)	73, 563
AcsI	RAATTY	1 cut(s)	634
AfaI	GTAC	3 cut(s)	304, 374, 515
AfiI	CCNNNNNNNGG	5 cut(s)	62, 176, 206, 328, 651
AgsI	TTSAA	5 cut(s)	394, 521, 593, 719, 883
AjnI	CCWGG	1 cut(s)	909
AleI	CACNNNNGTG	1 cut(s)	564
AloI	GAACNNNNNNTCC	2 cut(s)	855, 887
AluBI	AGCT	4 cut(s)	410, 596, 623, 755
AluI	AGCT	4 cut(s)	410, 596, 623, 755
Alw26I	GTCTC	3 cut(s)	374, 443, 454
AlwI	GGATC	2 cut(s)	73, 563
AoxI	GGCC	4 cut(s)	85, 105, 194, 653
ApeKI	GCWGC	3 cut(s)	163, 166, 418
ApoI	RAATTY	1 cut(s)	634
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
Asp718I	GGTACC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	4 cut(s)	95, 105, 180, 907
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	3 cut(s)	275, 365, 812
AvaII	GGWCC	3 cut(s)	95, 180, 907
AxyI	CCTNAGG	1 cut(s)	780
BaeI	ACNNNNGTAYC	2 cut(s)	294, 327
BanI	GGYRCC	2 cut(s)	302, 558
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	3 cut(s)	175, 178, 430
BccI	CCATC	1 cut(s)	449
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	911
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	3 cut(s)	374, 443, 454
BfaI	CTAG	3 cut(s)	192, 287, 831
BfuAI	ACCTGC	1 cut(s)	599
BglII	AGATCT	1 cut(s)	431
BisI	GCNGC	5 cut(s)	164, 167, 197, 200, 419
BlsI	GCNGC	5 cut(s)	165, 168, 198, 201, 420
BmcAI	AGTACT	2 cut(s)	374, 515
Bme1390I	CCNGG	2 cut(s)	178, 911
Bme18I	GGWCC	3 cut(s)	95, 180, 907
BmgT120I	GGNCC	4 cut(s)	95, 105, 180, 907
BmiI	GGNNCC	8 cut(s)	38, 96, 97, 124, 181, 304, 560, 908
BmrFI	CCNGG	2 cut(s)	178, 911
BmsI	GCATC	6 cut(s)	283, 565, 682, 775, 826, 838
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	454
BsaJI	CCNNGG	1 cut(s)	422
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 176, 206, 328, 651
Bse1I	ACTGG	1 cut(s)	499
Bse21I	CCTNAGG	1 cut(s)	780
BseBI	CCWGG	1 cut(s)	911
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	1 cut(s)	790
BseLI	CCNNNNNNNGG	5 cut(s)	62, 176, 206, 328, 651
BseMII	CTCAG	9 cut(s)	162, 347, 390, 454, 524, 570, 590, 771, 908
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	3 cut(s)	175, 178, 430
BseYI	CCCAGC	1 cut(s)	321
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	4 cut(s)	87, 107, 196, 655
BshNI	GGYRCC	2 cut(s)	302, 558
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	112, 177
BslFI	GGGAC	2 cut(s)	108, 193
BslI	CCNNNNNNNGG	5 cut(s)	62, 176, 206, 328, 651
BsmAI	GTCTC	3 cut(s)	374, 443, 454
BsmBI	CGTCTC	2 cut(s)	374, 443
BsmFI	GGGAC	2 cut(s)	108, 193
BsnI	GGCC	4 cut(s)	87, 107, 196, 655
Bso31I	GGTCTC	1 cut(s)	454
Bsp143I	GATC	4 cut(s)	65, 431, 568, 805
BspACI	CCGC	3 cut(s)	155, 197, 200
BspANI	GGCC	4 cut(s)	87, 107, 196, 655
BspCNI	CTCAG	9 cut(s)	163, 346, 389, 453, 523, 571, 591, 772, 907
BspLI	GGNNCC	8 cut(s)	38, 96, 97, 124, 181, 304, 560, 908
BspMI	ACCTGC	1 cut(s)	599
BspPI	GGATC	2 cut(s)	73, 563
BspQI	GCTCTTC	1 cut(s)	400
BspT107I	GGYRCC	2 cut(s)	302, 558
BspTNI	GGTCTC	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	4 cut(s)	65, 431, 568, 805
BssT1I	CCWWGG	1 cut(s)	422
Bst2UI	CCWGG	1 cut(s)	911
Bst6I	CTCTTC	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	841
BstDEI	CTNAG	9 cut(s)	171, 333, 376, 440, 510, 579, 599, 780, 894
BstF5I	GGATG	1 cut(s)	790
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	4 cut(s)	68, 434, 571, 808
BstMAI	GTCTC	3 cut(s)	374, 443, 454
BstMBI	GATC	4 cut(s)	65, 431, 568, 805
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 208, 707, 836
BstNI	CCWGG	1 cut(s)	911
BstNSI	RCATGY	2 cut(s)	668, 797
BstSCI	CCNGG	2 cut(s)	176, 909
BstV1I	GCAGC	3 cut(s)	175, 178, 430
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	2 cut(s)	65, 431
BstYI	RGATCY	2 cut(s)	65, 431
Bsu36I	CCTNAGG	1 cut(s)	780
BsuRI	GGCC	4 cut(s)	87, 107, 196, 655
BtsCI	GGATG	1 cut(s)	790
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	2 cut(s)	492, 708
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	841
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	4 cut(s)	95, 105, 180, 907
Csp6I	GTAC	3 cut(s)	303, 373, 514
CviAII	CATG	3 cut(s)	205, 665, 794
CviQI	GTAC	3 cut(s)	303, 373, 514
DdeI	CTNAG	9 cut(s)	171, 333, 376, 440, 510, 579, 599, 780, 894
DpnI	GATC	4 cut(s)	67, 433, 570, 807
DpnII	GATC	4 cut(s)	65, 431, 568, 805
DrdI	GACNNNNNNGTC	1 cut(s)	187
DseDI	GACNNNNNNGTC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	422
Eco147I	AGGCCT	1 cut(s)	655
Eco31I	GGTCTC	1 cut(s)	454
Eco47I	GGWCC	3 cut(s)	95, 180, 907
Eco81I	CCTNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	909
EcoT14I	CCWWGG	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	422
Esp3I	CGTCTC	2 cut(s)	374, 443
FaeI	CATG	3 cut(s)	208, 668, 797
FaqI	GGGAC	2 cut(s)	108, 193
FatI	CATG	3 cut(s)	204, 664, 793
Fnu4HI	GCNGC	5 cut(s)	164, 167, 197, 200, 419
FokI	GGATG	1 cut(s)	797
Fsp4HI	GCNGC	5 cut(s)	164, 167, 197, 200, 419
FspBI	CTAG	3 cut(s)	192, 287, 831
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	5 cut(s)	164, 167, 197, 200, 419
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	4 cut(s)	87, 107, 196, 655
HapII	CCGG	2 cut(s)	112, 177
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	3 cut(s)	208, 668, 797
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	2 cut(s)	173, 506
HpaII	CCGG	2 cut(s)	112, 177
HphI	GGTGA	3 cut(s)	275, 365, 812
Hpy166II	GTNNAC	3 cut(s)	132, 680, 874
Hpy188I	TCNGA	6 cut(s)	336, 379, 443, 505, 600, 897
Hpy188III	TCNNGA	1 cut(s)	572
Hpy8I	GTNNAC	3 cut(s)	132, 680, 874
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	5 cut(s)	243, 327, 475, 577, 889
HpyCH4V	TGCA	3 cut(s)	695, 793, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 208, 707, 836
HpyF3I	CTNAG	9 cut(s)	171, 333, 376, 440, 510, 579, 599, 780, 894
Hsp92II	CATG	3 cut(s)	208, 668, 797
HspAI	GCGC	1 cut(s)	161
KflI	GGGWCCC	1 cut(s)	95
KpnI	GGTACC	1 cut(s)	306
Kzo9I	GATC	4 cut(s)	65, 431, 568, 805
LguI	GCTCTTC	1 cut(s)	400
LmnI	GCTCC	2 cut(s)	42, 122
Lsp1109I	GCAGC	3 cut(s)	175, 178, 430
LweI	GCATC	6 cut(s)	283, 565, 682, 775, 826, 838
MaeI	CTAG	3 cut(s)	192, 287, 831
MalI	GATC	4 cut(s)	67, 433, 570, 807
MboI	GATC	4 cut(s)	65, 431, 568, 805
MboII	GAAGA	7 cut(s)	66, 251, 358, 417, 441, 480, 533
MflI	RGATCY	2 cut(s)	65, 431
MluCI	AATT	2 cut(s)	634, 761
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	761
MseI	TTAA	5 cut(s)	8, 615, 650, 750, 916
MslI	CAYNNNNRTG	2 cut(s)	564, 798
MspI	CCGG	2 cut(s)	112, 177
MspR9I	CCNGG	2 cut(s)	178, 911
MvaI	CCWGG	1 cut(s)	911
MwoI	GCNNNNNNNGC	4 cut(s)	11, 208, 707, 836
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	4 cut(s)	65, 431, 568, 805
NlaIII	CATG	3 cut(s)	208, 668, 797
NlaIV	GGNNCC	8 cut(s)	38, 96, 97, 124, 181, 304, 560, 908
NspI	RCATGY	2 cut(s)	668, 797
OliI	CACNNNNGTG	1 cut(s)	564
PaqCI	CACCTGC	1 cut(s)	599
PceI	AGGCCT	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	506
PflMI	CCANNNNNTGG	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	5 cut(s)	165, 168, 198, 201, 420
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	95
PsiI	TTATAA	1 cut(s)	531
Psp5II	RGGWCCY	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	909
PspFI	CCCAGC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	909
PspN4I	GGNNCC	8 cut(s)	38, 96, 97, 124, 181, 304, 560, 908
PspPI	GGNCC	4 cut(s)	95, 105, 180, 907
PspPPI	RGGWCCY	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	65, 431
RsaI	GTAC	3 cut(s)	304, 374, 515
RsaNI	GTAC	3 cut(s)	303, 373, 514
RseI	CAYNNNNRTG	2 cut(s)	564, 798
SapI	GCTCTTC	1 cut(s)	400
SaqAI	TTAA	5 cut(s)	8, 615, 650, 750, 916
SatI	GCNGC	5 cut(s)	164, 167, 197, 200, 419
Sau3AI	GATC	4 cut(s)	65, 431, 568, 805
Sau96I	GGNCC	4 cut(s)	95, 105, 180, 907
ScaI	AGTACT	2 cut(s)	374, 515
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	178, 911
SfaNI	GCATC	6 cut(s)	283, 565, 682, 775, 826, 838
SinI	GGWCC	3 cut(s)	95, 180, 907
SmiMI	CAYNNNNRTG	2 cut(s)	564, 798
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	634, 761
SseBI	AGGCCT	1 cut(s)	655
SsiI	CCGC	3 cut(s)	155, 197, 200
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	3 cut(s)	192, 287, 831
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	2 cut(s)	176, 909
StyI	CCWWGG	1 cut(s)	422
TaqI	TCGA	1 cut(s)	146
TasI	AATT	2 cut(s)	634, 761
TatI	WGTACW	2 cut(s)	372, 513
TauI	GCSGC	2 cut(s)	199, 202
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	5 cut(s)	8, 615, 650, 750, 916
Tru9I	TTAA	5 cut(s)	8, 615, 650, 750, 916
TscAI	CASTG	2 cut(s)	499, 708
TseI	GCWGC	3 cut(s)	163, 166, 418
TspGWI	ACGGA	2 cut(s)	378, 398
TspRI	CASTG	2 cut(s)	499, 708
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	3 cut(s)	95, 180, 907
XapI	RAATTY	1 cut(s)	634
XceI	RCATGY	2 cut(s)	668, 797
XspI	CTAG	3 cut(s)	192, 287, 831
ZrmI	AGTACT	2 cut(s)	374, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.