Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007794

Physical Location & Seq

Genomic Coordinates Forward (+)

41508734 .. 41511721

Gene Structure 2988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG316300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCGGCAATAATGTCAACCAGAACAAACCTCTTTAGGCTTCTCACCGCCGGAACACCAATTTTAGGATTCTCAAATGTTCATTTGTCGTCCGCTGCTGGGATTGGGTCGAGGCAGATAGACATGGGGGGCGTGAAAGATTATGAAGACTATAGGAGGTCTCTTTACGGTGAAATCACGCACAGGGCTCTGCTTGTTGATGCTGTAGGCACCCTTGTTGTTCCTTCTCAGCCAATGGCTCAGATATATAGGAAGATAGGGGAGAAGTATGGGGTGGAGTACTCAGAGGCTGAGATTTTGAACAGATACAGACGGGCTTACCAGCAGCCTTGGGGCAGATCTCGTCTCAGATATGTAAATGATGGGAGACCCTTTTGGCAACATATAGTCCGTTCTTCTACTGGTTGTTCAGATTCTCAGTACTTTGAAGAACTTTATAACTACTATACAACTAACAAGGCTTGGCACCTCTGTGATCCTGATGCTGAGAAAGTATTTGATGCTCTAAGAAAAGCAGGTGTCAAAGTAGCAGTTGTGTCAAATTTTGATACCCGGTTAAGACCTCTTTTGCAGGCTCTAAATTGTGAACATTGGTTTGATGCAGTAGCAGTGTCAGCAGAAGTAGAAGCCGAGAAGCCAAATCCCACAATATTTATTAAAGCTTGTGAGTTATTAGGGGTAAAACCTGAGGATGCTGTGCATGTGGGGGATGATCGTAGGAATGATATATGGGGTGCTAGAGATGCAGGTTGTGATGCTTGGCTTTGGGGAAGTGATGTTCATTCCTTTAAGGAGGTGGCTCAAAGGATAGGAGTCCGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

274

Amino Acids

30.98

Weight (kDa)

7.05

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	62 - 250	4.4e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	122 - 252	2.8e-16	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	212 - 267	3.6e-09	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41250
fragaria_vesca	FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490
malus_domestica	MD12G1093300.v1.1 MD14G1085300.v1.1
prunus_persica	Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1
pyrus_communis	pycom12g07860 pycom14g07490
rosa_chinensis	RchiOBHm_Chr2g0125431
rosa_laevigata	RLG00000018866
rosa_multiflora	Rmu_sc0005508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118000
rosa_rugosa	Rorug02G0257400
rosa_samantha	Rh2AG316300 Rh2BG323800 Rh2CG306000 Rh2DG342400
rosa_wichuraiana	Rw2G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AarI	CACCTGC	1 cut(s)	506
Acc36I	ACCTGC	2 cut(s)	506, 737
AccB1I	GGYRCC	2 cut(s)	209, 465
AccII	CGCG	1 cut(s)	819
AciI	CCGC	4 cut(s)	5, 48, 93, 817
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	541
AfaI	GTAC	2 cut(s)	281, 422
AfiI	CCNNNNNNNGG	2 cut(s)	65, 99
AgsI	TTSAA	2 cut(s)	301, 428
AleI	CACNNNNGTG	1 cut(s)	471
AloI	GAACNNNNNNTCC	2 cut(s)	762, 794
AluBI	AGCT	1 cut(s)	662
AluI	AGCT	1 cut(s)	662
Alw26I	GTCTC	3 cut(s)	165, 350, 361
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	95, 325
ApoI	RAATTY	1 cut(s)	541
AsuC2I	CCSGG	1 cut(s)	553
AsuHPI	GGTGA	2 cut(s)	37, 182
AxyI	CCTNAGG	1 cut(s)	687
BanI	GGYRCC	2 cut(s)	209, 465
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	82, 337
BccI	CCATC	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	3 cut(s)	165, 350, 361
BfaI	CTAG	1 cut(s)	738
BfmI	CTRYAG	2 cut(s)	151, 204
BfuAI	ACCTGC	2 cut(s)	506, 737
BglII	AGATCT	1 cut(s)	338
BisI	GCNGC	3 cut(s)	6, 96, 326
BlsI	GCNGC	3 cut(s)	7, 97, 327
BmcAI	AGTACT	2 cut(s)	281, 422
Bme1390I	CCNGG	1 cut(s)	553
BmiI	GGNNCC	2 cut(s)	211, 467
BmrFI	CCNGG	1 cut(s)	553
BmsI	GCATC	7 cut(s)	190, 472, 490, 589, 682, 733, 745
BpiI	GAAGAC	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	553
BsaI	GGTCTC	2 cut(s)	165, 361
BsaJI	CCNNGG	1 cut(s)	329
BsaXI	ACNNNNNCTCC	1 cut(s)	804
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 99
Bse1I	ACTGG	1 cut(s)	406
Bse21I	CCTNAGG	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	2 cut(s)	697, 715
BseLI	CCNNNNNNNGG	2 cut(s)	65, 99
BseMII	CTCAG	8 cut(s)	242, 254, 282, 297, 361, 431, 477, 678
BseNI	ACTGG	1 cut(s)	406
BseXI	GCAGC	2 cut(s)	82, 337
BseYI	CCCAGC	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	819
BshNI	GGYRCC	2 cut(s)	209, 465
BsiSI	CCGG	2 cut(s)	51, 553
BslI	CCNNNNNNNGG	2 cut(s)	65, 99
BsmAI	GTCTC	3 cut(s)	165, 350, 361
BsmBI	CGTCTC	1 cut(s)	350
Bso31I	GGTCTC	2 cut(s)	165, 361
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	338, 475, 712
BspACI	CCGC	4 cut(s)	5, 48, 93, 817
BspCNI	CTCAG	8 cut(s)	241, 253, 283, 296, 360, 430, 478, 679
BspFNI	CGCG	1 cut(s)	819
BspLI	GGNNCC	2 cut(s)	211, 467
BspMI	ACCTGC	2 cut(s)	506, 737
BspPI	GGATC	1 cut(s)	470
BspT107I	GGYRCC	2 cut(s)	209, 465
BspTNI	GGTCTC	2 cut(s)	165, 361
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	3 cut(s)	338, 475, 712
BssT1I	CCWWGG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	9 cut(s)	228, 240, 283, 291, 347, 417, 486, 506, 687
BstF5I	GGATG	2 cut(s)	697, 715
BstFNI	CGCG	1 cut(s)	819
BstKTI	GATC	3 cut(s)	341, 478, 715
BstMAI	GTCTC	3 cut(s)	165, 350, 361
BstMBI	GATC	3 cut(s)	338, 475, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	614, 743
BstNSI	RCATGY	1 cut(s)	704
BstSCI	CCNGG	1 cut(s)	551
BstSFI	CTRYAG	2 cut(s)	151, 204
BstUI	CGCG	1 cut(s)	819
BstV1I	GCAGC	2 cut(s)	82, 337
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
Bsu36I	CCTNAGG	1 cut(s)	687
BtsCI	GGATG	2 cut(s)	697, 715
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	1 cut(s)	615
BveI	ACCTGC	2 cut(s)	506, 737
Cac8I	GCNNGC	1 cut(s)	573
CaiI	CAGNNNCTG	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	280, 421
CviAII	CATG	2 cut(s)	124, 701
CviQI	GTAC	2 cut(s)	280, 421
DdeI	CTNAG	9 cut(s)	228, 240, 283, 291, 347, 417, 486, 506, 687
DpnI	GATC	3 cut(s)	340, 477, 714
DpnII	GATC	3 cut(s)	338, 475, 712
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	190
Eco31I	GGTCTC	2 cut(s)	165, 361
Eco81I	CCTNAGG	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	2 cut(s)	127, 704
FatI	CATG	2 cut(s)	123, 700
Fnu4HI	GCNGC	3 cut(s)	6, 96, 326
FokI	GGATG	2 cut(s)	704, 722
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	3 cut(s)	6, 96, 326
FspBI	CTAG	1 cut(s)	738
GluI	GCNGC	3 cut(s)	6, 96, 326
GsaI	CCCAGC	1 cut(s)	102
HapII	CCGG	2 cut(s)	51, 553
Hin1II	CATG	2 cut(s)	127, 704
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	3 cut(s)	69, 413, 813
HpaII	CCGG	2 cut(s)	51, 553
HphI	GGTGA	2 cut(s)	37, 182
Hpy166II	GTNNAC	2 cut(s)	18, 587
Hpy188I	TCNGA	4 cut(s)	243, 286, 350, 412
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	2 cut(s)	18, 587
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	4 cut(s)	571, 602, 700, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	614, 743
HpyF3I	CTNAG	9 cut(s)	228, 240, 283, 291, 347, 417, 486, 506, 687
Hsp92II	CATG	2 cut(s)	127, 704
Kzo9I	GATC	3 cut(s)	338, 475, 712
Lsp1109I	GCAGC	2 cut(s)	82, 337
LweI	GCATC	7 cut(s)	190, 472, 490, 589, 682, 733, 745
MaeI	CTAG	1 cut(s)	738
MalI	GATC	3 cut(s)	340, 477, 714
MboI	GATC	3 cut(s)	338, 475, 712
MboII	GAAGA	4 cut(s)	158, 265, 387, 440
MflI	RGATCY	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	3 cut(s)	60, 541, 580
MlyI	GAGTC	1 cut(s)	822
MnlI	CCTC	8 cut(s)	41, 105, 150, 280, 479, 573, 682, 787
MseI	TTAA	3 cut(s)	557, 657, 789
MslI	CAYNNNNRTG	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	2 cut(s)	51, 553
MspR9I	CCNGG	1 cut(s)	553
MvnI	CGCG	1 cut(s)	819
MwoI	GCNNNNNNNGC	2 cut(s)	614, 743
NciI	CCSGG	1 cut(s)	553
NdeII	GATC	3 cut(s)	338, 475, 712
NlaIII	CATG	2 cut(s)	127, 704
NlaIV	GGNNCC	2 cut(s)	211, 467
NmeAIII	GCCGAG	1 cut(s)	655
NspI	RCATGY	1 cut(s)	704
OliI	CACNNNNGTG	1 cut(s)	471
PaqCI	CACCTGC	1 cut(s)	506
PfeI	GAWTC	2 cut(s)	69, 413
PkrI	GCNGC	3 cut(s)	7, 97, 327
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PsiI	TTATAA	1 cut(s)	438
PspFI	CCCAGC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	211, 467
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	338
RsaI	GTAC	2 cut(s)	281, 422
RsaNI	GTAC	2 cut(s)	280, 421
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	3 cut(s)	557, 657, 789
SatI	GCNGC	3 cut(s)	6, 96, 326
Sau3AI	GATC	3 cut(s)	338, 475, 712
ScaI	AGTACT	2 cut(s)	281, 422
SchI	GAGTC	1 cut(s)	822
ScrFI	CCNGG	1 cut(s)	553
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	9 cut(s)	33, 161, 471, 520, 565, 664, 688, 751, 798
SfaNI	GCATC	7 cut(s)	190, 472, 490, 589, 682, 733, 745
SfcI	CTRYAG	2 cut(s)	151, 204
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	3 cut(s)	60, 541, 580
SsiI	CCGC	4 cut(s)	5, 48, 93, 817
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	1 cut(s)	738
StyD4I	CCNGG	1 cut(s)	551
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	110
TasI	AATT	3 cut(s)	60, 541, 580
TatI	WGTACW	2 cut(s)	279, 420
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	69, 413
Tru1I	TTAA	3 cut(s)	557, 657, 789
Tru9I	TTAA	3 cut(s)	557, 657, 789
TscAI	CASTG	1 cut(s)	615
TseI	GCWGC	2 cut(s)	95, 325
TspDTI	ATGAA	3 cut(s)	71, 159, 770
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	615
XapI	RAATTY	1 cut(s)	541
XceI	RCATGY	1 cut(s)	704
XspI	CTAG	1 cut(s)	738
ZrmI	AGTACT	2 cut(s)	281, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.