Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007794

Physical Location & Seq

Genomic Coordinates Forward (+)

38433140 .. 38436136

Gene Structure 2997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018866

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCGGCAATAATGTCAACCAGAACAAACCTCTTTAGGCTTCTCACCGCCGGAACACCAATTTTAGGATTCTCAAATGTTCAGCTGCGTTATTCGTCGTCTGCTGCTGGGATTGGGTCGAGGCAGATAGACATGGGGGGCGTGAAAGATTATGAAGACTATAGGAGGTCTCTTTACGGTGAAATCACGCACAAGGCTCTGCTTGTTGATGCTGTAGGCACCCTTGTTGTTCCTTCTCAGCCAATGGCTCAGATATATAGGAAGATAGGGGAGAAGTATGGGGTGGAGTACTCAGAGGCTGAGATTTTGAACAGATACAGACGGGCTTACCAGCAGCCTTGGGGCAGATCTCGTCTCAGATATGTAAATGATGGGAGACCCTTTTGGCAACATATAGTCCGTTCTTCTACTGGTTGTTCAGATTCTCAGTACTTTGAAGAACTTTATAACTACTATACAACTAAGAAGGCTTGGCACCTCTGTGATCCTGATGCTGAGAAAGTATTTGAAGCTCTAAGAAAAGCAGGTGTCAAAGTAGCGGTTGTGTCAAATTTTGATACCCGGTTAAGACCTCTTTTGCAGGCTCTAAATTGTGAACATTGGTTTGATGCAGTAGCAGTGTCAGCAGAAGTAGAAGCTGAGAAGCCAAATCCCACAATATTTATTAAAGCTTGTGAGCTATTAGGGGTAAAACCTGAGGATGCTGTGCATGTGGGGGATGATCGTAGGAATGATATATGGGGTGCTAGAGATGCAGGTTGTGATGCTTGGCTTTGGGGAAGTGATGTTCATTCCTTTGAGGAGGTGGCTCAAAGGATAGGAGTCCGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

278

Amino Acids

31.38

Weight (kDa)

7.01

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	65 - 253	1.6e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	125 - 255	1.4e-16	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	215 - 270	2.3e-09	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41250
fragaria_vesca	FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490
malus_domestica	MD12G1093300.v1.1 MD14G1085300.v1.1
prunus_persica	Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1
pyrus_communis	pycom12g07860 pycom14g07490
rosa_chinensis	RchiOBHm_Chr2g0125431
rosa_laevigata	RLG00000018866
rosa_multiflora	Rmu_sc0005508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118000
rosa_rugosa	Rorug02G0257400
rosa_samantha	Rh2AG316300 Rh2BG323800 Rh2CG306000 Rh2DG342400
rosa_wichuraiana	Rw2G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AarI	CACCTGC	1 cut(s)	515
Acc36I	ACCTGC	2 cut(s)	515, 746
AccB1I	GGYRCC	2 cut(s)	218, 474
AccII	CGCG	1 cut(s)	828
AciI	CCGC	4 cut(s)	5, 48, 539, 826
AclWI	GGATC	1 cut(s)	479
AcsI	RAATTY	1 cut(s)	550
AfaI	GTAC	2 cut(s)	290, 431
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	3 cut(s)	310, 437, 509
AleI	CACNNNNGTG	1 cut(s)	480
AloI	GAACNNNNNNTCC	2 cut(s)	771, 803
AluBI	AGCT	5 cut(s)	85, 512, 638, 671, 679
AluI	AGCT	5 cut(s)	85, 512, 638, 671, 679
Alw26I	GTCTC	3 cut(s)	174, 359, 370
AlwI	GGATC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	299
ApeKI	GCWGC	3 cut(s)	85, 104, 334
ApoI	RAATTY	1 cut(s)	550
AsuC2I	CCSGG	1 cut(s)	562
AsuHPI	GGTGA	2 cut(s)	37, 191
AxyI	CCTNAGG	1 cut(s)	696
BanI	GGYRCC	2 cut(s)	218, 474
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	72, 91, 346
BccI	CCATC	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	562
BcoDI	GTCTC	3 cut(s)	174, 359, 370
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	2 cut(s)	160, 213
BfuAI	ACCTGC	2 cut(s)	515, 746
BglII	AGATCT	1 cut(s)	347
BisI	GCNGC	4 cut(s)	6, 86, 105, 335
BlsI	GCNGC	4 cut(s)	7, 87, 106, 336
BmcAI	AGTACT	2 cut(s)	290, 431
Bme1390I	CCNGG	1 cut(s)	562
BmiI	GGNNCC	2 cut(s)	220, 476
BmrFI	CCNGG	1 cut(s)	562
BmsI	GCATC	6 cut(s)	199, 481, 598, 691, 742, 754
BpiI	GAAGAC	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	562
BsaI	GGTCTC	2 cut(s)	174, 370
BsaJI	CCNNGG	1 cut(s)	338
BsaXI	ACNNNNNCTCC	1 cut(s)	813
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	415
Bse21I	CCTNAGG	1 cut(s)	696
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	2 cut(s)	706, 724
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	9 cut(s)	251, 263, 291, 306, 370, 440, 486, 630, 687
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	815
BseXI	GCAGC	3 cut(s)	72, 91, 346
BseYI	CCCAGC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	828
BshNI	GGYRCC	2 cut(s)	218, 474
BsiSI	CCGG	2 cut(s)	51, 562
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	3 cut(s)	174, 359, 370
BsmBI	CGTCTC	1 cut(s)	359
Bso31I	GGTCTC	2 cut(s)	174, 370
Bsp143I	GATC	3 cut(s)	347, 484, 721
BspACI	CCGC	4 cut(s)	5, 48, 539, 826
BspCNI	CTCAG	9 cut(s)	250, 262, 292, 305, 369, 439, 487, 631, 688
BspFNI	CGCG	1 cut(s)	828
BspLI	GGNNCC	2 cut(s)	220, 476
BspMI	ACCTGC	2 cut(s)	515, 746
BspPI	GGATC	1 cut(s)	479
BspT107I	GGYRCC	2 cut(s)	218, 474
BspTNI	GGTCTC	2 cut(s)	174, 370
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	3 cut(s)	347, 484, 721
BssT1I	CCWWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	582
BstF5I	GGATG	2 cut(s)	706, 724
BstFNI	CGCG	1 cut(s)	828
BstKTI	GATC	3 cut(s)	350, 487, 724
BstMAI	GTCTC	3 cut(s)	174, 359, 370
BstMBI	GATC	3 cut(s)	347, 484, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	623, 752
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	560
BstSFI	CTRYAG	2 cut(s)	160, 213
BstUI	CGCG	1 cut(s)	828
BstV1I	GCAGC	3 cut(s)	72, 91, 346
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
Bsu36I	CCTNAGG	1 cut(s)	696
BtsCI	GGATG	2 cut(s)	706, 724
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	1 cut(s)	624
BveI	ACCTGC	2 cut(s)	515, 746
Cac8I	GCNNGC	1 cut(s)	582
CaiI	CAGNNNCTG	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	289, 430
CviAII	CATG	2 cut(s)	133, 710
CviQI	GTAC	2 cut(s)	289, 430
DpnI	GATC	3 cut(s)	349, 486, 723
DpnII	GATC	3 cut(s)	347, 484, 721
Eco130I	CCWWGG	1 cut(s)	338
Eco31I	GGTCTC	2 cut(s)	174, 370
Eco81I	CCTNAGG	1 cut(s)	696
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	2 cut(s)	136, 713
FatI	CATG	2 cut(s)	132, 709
Fnu4HI	GCNGC	4 cut(s)	6, 86, 105, 335
FokI	GGATG	2 cut(s)	713, 731
Fsp4HI	GCNGC	4 cut(s)	6, 86, 105, 335
FspBI	CTAG	1 cut(s)	747
GluI	GCNGC	4 cut(s)	6, 86, 105, 335
GsaI	CCCAGC	1 cut(s)	111
HapII	CCGG	2 cut(s)	51, 562
Hin1II	CATG	2 cut(s)	136, 713
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	3 cut(s)	69, 422, 822
HpaII	CCGG	2 cut(s)	51, 562
HphI	GGTGA	2 cut(s)	37, 191
Hpy166II	GTNNAC	2 cut(s)	18, 596
Hpy188I	TCNGA	4 cut(s)	252, 295, 359, 421
Hpy188III	TCNNGA	1 cut(s)	488
Hpy8I	GTNNAC	2 cut(s)	18, 596
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	243, 460
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	4 cut(s)	580, 611, 709, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	623, 752
Hsp92II	CATG	2 cut(s)	136, 713
Kzo9I	GATC	3 cut(s)	347, 484, 721
Lsp1109I	GCAGC	3 cut(s)	72, 91, 346
LweI	GCATC	6 cut(s)	199, 481, 598, 691, 742, 754
MaeI	CTAG	1 cut(s)	747
MalI	GATC	3 cut(s)	349, 486, 723
MboI	GATC	3 cut(s)	347, 484, 721
MboII	GAAGA	4 cut(s)	167, 274, 396, 449
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	3 cut(s)	60, 550, 589
MlyI	GAGTC	1 cut(s)	831
MnlI	CCTC	9 cut(s)	41, 114, 159, 289, 488, 582, 691, 793, 796
MseI	TTAA	2 cut(s)	566, 666
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	2 cut(s)	51, 562
MspR9I	CCNGG	1 cut(s)	562
MvnI	CGCG	1 cut(s)	828
MwoI	GCNNNNNNNGC	2 cut(s)	623, 752
NciI	CCSGG	1 cut(s)	562
NdeII	GATC	3 cut(s)	347, 484, 721
NlaIII	CATG	2 cut(s)	136, 713
NlaIV	GGNNCC	2 cut(s)	220, 476
NspI	RCATGY	1 cut(s)	713
OliI	CACNNNNGTG	1 cut(s)	480
PaqCI	CACCTGC	1 cut(s)	515
PfeI	GAWTC	2 cut(s)	69, 422
PkrI	GCNGC	4 cut(s)	7, 87, 106, 336
PleI	GAGTC	1 cut(s)	830
PpsI	GAGTC	1 cut(s)	830
PsiI	TTATAA	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	220, 476
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	2 cut(s)	290, 431
RsaNI	GTAC	2 cut(s)	289, 430
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	566, 666
SatI	GCNGC	4 cut(s)	6, 86, 105, 335
Sau3AI	GATC	3 cut(s)	347, 484, 721
ScaI	AGTACT	2 cut(s)	290, 431
SchI	GAGTC	1 cut(s)	831
ScrFI	CCNGG	1 cut(s)	562
SfaNI	GCATC	6 cut(s)	199, 481, 598, 691, 742, 754
SfcI	CTRYAG	2 cut(s)	160, 213
SmiMI	CAYNNNNRTG	1 cut(s)	480
Sse9I	AATT	3 cut(s)	60, 550, 589
SsiI	CCGC	4 cut(s)	5, 48, 539, 826
SspI	AATATT	1 cut(s)	660
SspMI	CTAG	1 cut(s)	747
StyD4I	CCNGG	1 cut(s)	560
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	60, 550, 589
TatI	WGTACW	2 cut(s)	288, 429
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	69, 422
Tru1I	TTAA	2 cut(s)	566, 666
Tru9I	TTAA	2 cut(s)	566, 666
TscAI	CASTG	1 cut(s)	624
TseI	GCWGC	3 cut(s)	85, 104, 334
TspDTI	ATGAA	2 cut(s)	168, 779
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	624
XapI	RAATTY	1 cut(s)	550
XceI	RCATGY	1 cut(s)	713
XspI	CTAG	1 cut(s)	747
ZrmI	AGTACT	2 cut(s)	290, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.