Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007794

Physical Location & Seq

Genomic Coordinates Reverse (-)

7656444 .. 7659167

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07490.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGTTAATGGCAACCAGAACAAACTTCTTAAGGCTCCTCACAACAAAAGCACCAATTTTGGGATCTGTGTCTTACTCCAATGGCCTCAAGCGACCGGTTCGGGTTGACCGGGGCGGTGGAGCCGGGTTGACGTCGCCGTATTCCACCTCTGCGGTGGCGCAGCAGCCAGAGTCCGGGATCATTGGGTCGAGGCCACCGCACATGGGGTTGGAGATATTGGGTGTGAAAGATTACGAAGATTATAGGAGGTCTTTGTATGGTGAAATCACTCACAAGGCTTTGCTTGTTGATGCTGTTGGTACCCTTGTTGTTCCTTCCCAGCCAATGGCTCAGATATATAGGAAGATAGGCGAGAAATATGGAGTGGAGTACTCCGAGGCCGAGATTTTAAACAGATACAGAAGAGCTTACGAGCAGCCTTGGGGAAGATCGATCTCGTCTCAGTGTGTGTTTCCTCTTTTTTGTTGTAGATATGTAAACGATGGGAGACCCTTCTGGCAATATATAGTCAGTTCTTCCACTGGCTGCTCAGATTCTCAGTACTTTGAAGAGCTTTATAACTACTATACGACTGACAAGGCTTGGCACCTCTGTGATCCTGATGCTGAGAGAGTGTTTAAAGCTCTGAGGAAAGCAGGTGTCAAAGTAGCTGTTGTGTCAAATTTTGATACCCGATTAAGACCTGTTTTACATGCTCTACATTGTGAACAATGGTTTGATGCAATAGCAGTGTCAGCTGAAGTTGAAGCAGAGAAACCAAATCCAACAATATTTCTTAAGGCTTGTGAATTATTGGGAGTAAAACCTGAGGATGCTGTGCACGTAGGTGATGATCGTAGGAATGATATATGGGGTGCTAGAGATGCAGGCTGTGATGCTTGGCTTTGGGGAAGTGATGTTCACTCCTTTAAGGAGGTGGCTCAGAGGGTAGGGGTCCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

316

Amino Acids

35.29

Weight (kDa)

7.07

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41250
fragaria_vesca	FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490
malus_domestica	MD12G1093300.v1.1 MD14G1085300.v1.1
prunus_persica	Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1
pyrus_communis	pycom12g07860 pycom14g07490
rosa_chinensis	RchiOBHm_Chr2g0125431
rosa_laevigata	RLG00000018866
rosa_multiflora	Rmu_sc0005508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118000
rosa_rugosa	Rorug02G0257400
rosa_samantha	Rh2AG316300 Rh2BG323800 Rh2CG306000 Rh2DG342400
rosa_wichuraiana	Rw2G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	561
AarI	CACCTGC	1 cut(s)	629
AatII	GACGTC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	629
Acc65I	GGTACC	1 cut(s)	302
AccB1I	GGYRCC	2 cut(s)	302, 588
AccB7I	CCANNNNNTGG	1 cut(s)	328
AciI	CCGC	3 cut(s)	117, 155, 200
AclWI	GGATC	3 cut(s)	73, 188, 593
AcsI	RAATTY	1 cut(s)	664
AcuI	CTGAAG	1 cut(s)	762
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	3 cut(s)	304, 374, 545
AfiI	CCNNNNNNNGG	4 cut(s)	62, 176, 206, 328
AflII	CTTAAG	2 cut(s)	31, 779
AgeI	ACCGGT	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	551, 749
AleI	CACNNNNGTG	2 cut(s)	594, 828
AloI	GAACNNNNNNTCC	2 cut(s)	885, 917
AluBI	AGCT	5 cut(s)	410, 556, 626, 653, 740
AluI	AGCT	5 cut(s)	410, 556, 626, 653, 740
Alw21I	GWGCWC	1 cut(s)	825
Alw26I	GTCTC	2 cut(s)	447, 484
Alw44I	GTGCAC	1 cut(s)	821
AlwI	GGATC	3 cut(s)	73, 188, 593
AoxI	GGCC	3 cut(s)	85, 194, 381
ApaLI	GTGCAC	1 cut(s)	821
ApeKI	GCWGC	4 cut(s)	163, 166, 418, 528
ApoI	RAATTY	1 cut(s)	664
AsiGI	ACCGGT	1 cut(s)	97
Asp718I	GGTACC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	937
AsuC2I	CCSGG	3 cut(s)	113, 127, 178
AsuHPI	GGTGA	2 cut(s)	275, 842
AvaII	GGWCC	1 cut(s)	937
AxyI	CCTNAGG	1 cut(s)	810
BaeGI	GKGCMC	1 cut(s)	825
BaeI	ACNNNNGTAYC	2 cut(s)	294, 327
BanI	GGYRCC	2 cut(s)	302, 588
Bbv12I	GWGCWC	1 cut(s)	825
BbvI	GCAGC	4 cut(s)	175, 178, 430, 515
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	1 cut(s)	124
BcnI	CCSGG	3 cut(s)	113, 127, 178
BcoDI	GTCTC	2 cut(s)	447, 484
BfaI	CTAG	1 cut(s)	861
BfrI	CTTAAG	2 cut(s)	31, 779
BfuAI	ACCTGC	1 cut(s)	629
BisI	GCNGC	4 cut(s)	164, 167, 419, 529
BlsI	GCNGC	4 cut(s)	165, 168, 420, 530
BmcAI	AGTACT	2 cut(s)	374, 545
Bme1390I	CCNGG	3 cut(s)	113, 127, 178
Bme18I	GGWCC	1 cut(s)	937
BmgT120I	GGNCC	1 cut(s)	937
BmiI	GGNNCC	5 cut(s)	38, 124, 304, 590, 938
BmrFI	CCNGG	3 cut(s)	113, 127, 178
BmsI	GCATC	6 cut(s)	283, 595, 712, 805, 856, 868
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	3 cut(s)	113, 127, 178
Bsa29I	ATCGAT	1 cut(s)	434
BsaAI	YACGTR	1 cut(s)	826
BsaHI	GRCGYC	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	3 cut(s)	112, 378, 422
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 176, 206, 328
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	529
Bse21I	CCTNAGG	1 cut(s)	810
BseCI	ATCGAT	1 cut(s)	434
BseDI	CCNNGG	3 cut(s)	112, 378, 422
BseGI	GGATG	1 cut(s)	820
BseLI	CCNNNNNNNGG	4 cut(s)	62, 176, 206, 328
BseMII	CTCAG	8 cut(s)	347, 458, 546, 554, 600, 620, 801, 938
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	825
BseXI	GCAGC	4 cut(s)	175, 178, 430, 515
BseYI	CCCAGC	1 cut(s)	321
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	3 cut(s)	87, 196, 383
BshNI	GGYRCC	2 cut(s)	302, 588
BshTI	ACCGGT	1 cut(s)	97
BshVI	ATCGAT	1 cut(s)	434
BsiEI	CGRYCG	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	825
BsiSI	CCGG	4 cut(s)	98, 112, 126, 177
BslI	CCNNNNNNNGG	4 cut(s)	62, 176, 206, 328
BsmAI	GTCTC	2 cut(s)	447, 484
BsmBI	CGTCTC	1 cut(s)	447
BsnI	GGCC	3 cut(s)	87, 196, 383
Bso31I	GGTCTC	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	825
Bsp143I	GATC	6 cut(s)	65, 180, 431, 435, 598, 835
BspACI	CCGC	3 cut(s)	117, 155, 200
BspANI	GGCC	3 cut(s)	87, 196, 383
BspCNI	CTCAG	8 cut(s)	346, 457, 545, 553, 601, 621, 802, 937
BspDI	ATCGAT	1 cut(s)	434
BspLI	GGNNCC	5 cut(s)	38, 124, 304, 590, 938
BspMI	ACCTGC	1 cut(s)	629
BspPI	GGATC	3 cut(s)	73, 188, 593
BspQI	GCTCTTC	2 cut(s)	400, 546
BspT107I	GGYRCC	2 cut(s)	302, 588
BspTI	CTTAAG	2 cut(s)	31, 779
BspTNI	GGTCTC	1 cut(s)	484
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	112, 378, 422
BssMI	GATC	6 cut(s)	65, 180, 431, 435, 598, 835
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	422
Bst6I	CTCTTC	2 cut(s)	400, 546
BstACI	GRCGYC	1 cut(s)	134
BstAFI	CTTAAG	2 cut(s)	31, 779
BstBAI	YACGTR	1 cut(s)	826
BstC8I	GCNNGC	1 cut(s)	871
BstDEI	CTNAG	8 cut(s)	333, 444, 532, 540, 609, 629, 810, 924
BstF5I	GGATG	1 cut(s)	820
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	6 cut(s)	68, 183, 434, 438, 601, 838
BstMAI	GTCTC	2 cut(s)	447, 484
BstMBI	GATC	6 cut(s)	65, 180, 431, 435, 598, 835
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 737, 866
BstNSI	RCATGY	1 cut(s)	698
BstSCI	CCNGG	3 cut(s)	111, 125, 176
BstSLI	GKGCMC	1 cut(s)	825
BstV1I	GCAGC	4 cut(s)	175, 178, 430, 515
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
Bsu15I	ATCGAT	1 cut(s)	434
Bsu36I	CCTNAGG	1 cut(s)	810
BsuRI	GGCC	3 cut(s)	87, 196, 383
BsuTUI	ATCGAT	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	820
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	3 cut(s)	452, 522, 738
BveI	ACCTGC	1 cut(s)	629
Cac8I	GCNNGC	1 cut(s)	871
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	937
ClaI	ATCGAT	1 cut(s)	434
Csp6I	GTAC	3 cut(s)	303, 373, 544
CspAI	ACCGGT	1 cut(s)	97
CviAII	CATG	3 cut(s)	205, 695, 941
CviQI	GTAC	3 cut(s)	303, 373, 544
DdeI	CTNAG	8 cut(s)	333, 444, 532, 540, 609, 629, 810, 924
DpnI	GATC	6 cut(s)	67, 182, 433, 437, 600, 837
DpnII	GATC	6 cut(s)	65, 180, 431, 435, 598, 835
DraI	TTTAAA	2 cut(s)	393, 622
Eam1104I	CTCTTC	2 cut(s)	400, 546
EarI	CTCTTC	2 cut(s)	400, 546
Eco130I	CCWWGG	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	937
Eco57I	CTGAAG	1 cut(s)	762
Eco81I	CCTNAGG	1 cut(s)	810
EcoT14I	CCWWGG	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	422
Esp3I	CGTCTC	1 cut(s)	447
FaeI	CATG	3 cut(s)	208, 698, 944
FatI	CATG	3 cut(s)	204, 694, 940
Fnu4HI	GCNGC	4 cut(s)	164, 167, 419, 529
FokI	GGATG	1 cut(s)	827
Fsp4HI	GCNGC	4 cut(s)	164, 167, 419, 529
FspBI	CTAG	1 cut(s)	861
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	4 cut(s)	164, 167, 419, 529
GsaI	CCCAGC	1 cut(s)	325
HaeIII	GGCC	3 cut(s)	87, 196, 383
HapII	CCGG	4 cut(s)	98, 112, 126, 177
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	208, 698, 944
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	2 cut(s)	109, 132
HindII	GTYRAC	2 cut(s)	109, 132
HinfI	GANTC	2 cut(s)	173, 536
HpaII	CCGG	4 cut(s)	98, 112, 126, 177
HphI	GGTGA	2 cut(s)	275, 842
Hpy166II	GTNNAC	6 cut(s)	109, 132, 481, 710, 823, 904
Hpy188I	TCNGA	5 cut(s)	336, 379, 535, 630, 927
Hpy188III	TCNNGA	1 cut(s)	602
Hpy8I	GTNNAC	6 cut(s)	109, 132, 481, 710, 823, 904
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	2 cut(s)	327, 505
HpyCH4IV	ACGT	2 cut(s)	134, 825
HpyCH4V	TGCA	3 cut(s)	725, 823, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 737, 866
HpyF3I	CTNAG	8 cut(s)	333, 444, 532, 540, 609, 629, 810, 924
HpySE526I	ACGT	2 cut(s)	134, 825
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	3 cut(s)	208, 698, 944
HspAI	GCGC	1 cut(s)	161
KpnI	GGTACC	1 cut(s)	306
Kzo9I	GATC	6 cut(s)	65, 180, 431, 435, 598, 835
LguI	GCTCTTC	2 cut(s)	400, 546
LmnI	GCTCC	2 cut(s)	42, 122
Lsp1109I	GCAGC	4 cut(s)	175, 178, 430, 515
LweI	GCATC	6 cut(s)	283, 595, 712, 805, 856, 868
MaeI	CTAG	1 cut(s)	861
MaeII	ACGT	2 cut(s)	134, 825
MalI	GATC	6 cut(s)	67, 182, 433, 437, 600, 837
MboI	GATC	6 cut(s)	65, 180, 431, 435, 598, 835
MboII	GAAGA	6 cut(s)	251, 358, 417, 441, 510, 563
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	825
MluCI	AATT	3 cut(s)	57, 664, 791
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	2 cut(s)	192, 791
MseI	TTAA	8 cut(s)	8, 32, 392, 621, 680, 780, 912, 946
MslI	CAYNNNNRTG	2 cut(s)	594, 828
MspA1I	CMGCKG	1 cut(s)	740
MspCI	CTTAAG	2 cut(s)	31, 779
MspI	CCGG	4 cut(s)	98, 112, 126, 177
MspR9I	CCNGG	3 cut(s)	113, 127, 178
MwoI	GCNNNNNNNGC	3 cut(s)	11, 737, 866
NciI	CCSGG	3 cut(s)	113, 127, 178
NdeII	GATC	6 cut(s)	65, 180, 431, 435, 598, 835
NlaIII	CATG	3 cut(s)	208, 698, 944
NlaIV	GGNNCC	5 cut(s)	38, 124, 304, 590, 938
NmeAIII	GCCGAG	1 cut(s)	409
NspI	RCATGY	1 cut(s)	698
OliI	CACNNNNGTG	2 cut(s)	594, 828
PaqCI	CACCTGC	1 cut(s)	629
PciSI	GCTCTTC	2 cut(s)	400, 546
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	176
PinAI	ACCGGT	1 cut(s)	97
PkrI	GCNGC	4 cut(s)	165, 168, 420, 530
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Ppu21I	YACGTR	1 cut(s)	826
PsiI	TTATAA	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	321
PspN4I	GGNNCC	5 cut(s)	38, 124, 304, 590, 938
PspPI	GGNCC	1 cut(s)	937
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	3 cut(s)	304, 374, 545
RsaNI	GTAC	3 cut(s)	303, 373, 544
RseI	CAYNNNNRTG	2 cut(s)	594, 828
SapI	GCTCTTC	2 cut(s)	400, 546
SaqAI	TTAA	8 cut(s)	8, 32, 392, 621, 680, 780, 912, 946
SatI	GCNGC	4 cut(s)	164, 167, 419, 529
Sau3AI	GATC	6 cut(s)	65, 180, 431, 435, 598, 835
Sau96I	GGNCC	1 cut(s)	937
ScaI	AGTACT	2 cut(s)	374, 545
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	3 cut(s)	113, 127, 178
SduI	GDGCHC	1 cut(s)	825
SfaNI	GCATC	6 cut(s)	283, 595, 712, 805, 856, 868
SinI	GGWCC	1 cut(s)	937
SmiMI	CAYNNNNRTG	2 cut(s)	594, 828
SmlI	CTYRAG	3 cut(s)	31, 89, 779
SmoI	CTYRAG	3 cut(s)	31, 89, 779
Sse9I	AATT	3 cut(s)	57, 664, 791
SsiI	CCGC	3 cut(s)	117, 155, 200
SspI	AATATT	1 cut(s)	774
SspMI	CTAG	1 cut(s)	861
StyD4I	CCNGG	3 cut(s)	111, 125, 176
StyI	CCWWGG	1 cut(s)	422
TaiI	ACGT	2 cut(s)	137, 828
TaqI	TCGA	2 cut(s)	191, 434
TasI	AATT	3 cut(s)	57, 664, 791
TatI	WGTACW	2 cut(s)	372, 543
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	8 cut(s)	8, 32, 392, 621, 680, 780, 912, 946
Tru9I	TTAA	8 cut(s)	8, 32, 392, 621, 680, 780, 912, 946
TscAI	CASTG	3 cut(s)	452, 529, 738
TseI	GCWGC	4 cut(s)	163, 166, 418, 528
TspRI	CASTG	3 cut(s)	452, 529, 738
Van91I	CCANNNNNTGG	1 cut(s)	328
Vha464I	CTTAAG	2 cut(s)	31, 779
VneI	GTGCAC	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	937
XapI	RAATTY	1 cut(s)	664
XceI	RCATGY	1 cut(s)	698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	861
ZraI	GACGTC	1 cut(s)	135
ZrmI	AGTACT	2 cut(s)	374, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.