Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007794

Physical Location & Seq

Genomic Coordinates Reverse (-)

19405300 .. 19409340

Gene Structure 4041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25490.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCGGCAATAAGAAGAAACCTCTGTAGGCTTCAGCGGGTCTATTCGTCTGCAGCTGCAATTGAGTCGACGACGGGGGGCGTGAAAGATTACGAAGACTATAGGAGGTCCCTTTACGGTGACATCACCCACAAAGCTCTCCTTGTTGATGCTGTCGGCACCCTCCTTGTTCCTTCTCAGCCTATGGCTCAGATATATAGGCAGATAGGGGAGAAGTATGGGGTGGAATACTCAGAGGCTGAGATTTTGAACAGATACAGACGAGCTTACGAGCAGCCTTGGGGCAGATCTCGTCTCAGATATGTAAATGATGGGAGACCCTTTTGGCAATATATAGTCCGATCTTCTACTGGTTGTTCAGATTCTCAGTACTTTGAAGAACTTTATAACTACTATACAACTAACAAGGCTTGGCACCTATGTGATCCTGATGCTGAGGTTGTATTTGAAGCTCTAAGGAAAGCAGGTGTCAAAGTTGCTGTCGTGTCAAATTTTGATACCCGATTAAGACCTCTTTTACAGGCATTAAATTGCGAACATTGGTTTGATGCGGTAGCAGTGTCAGCAGAAGCAAGTGGTAGCAGCGGAGAAGCCAAATCCCACAATATTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

205

Amino Acids

23.29

Weight (kDa)

7.65

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	45 - 233	8.8e-23	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	61 - 235	4.1e-15	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	195 - 250	1.7e-08	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41250
fragaria_vesca	FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490
malus_domestica	MD12G1093300.v1.1 MD14G1085300.v1.1
prunus_persica	Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1
pyrus_communis	pycom12g07860 pycom14g07490
rosa_chinensis	RchiOBHm_Chr2g0125431
rosa_laevigata	RLG00000018866
rosa_multiflora	Rmu_sc0005508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118000
rosa_rugosa	Rorug02G0257400
rosa_samantha	Rh2AG316300 Rh2BG323800 Rh2CG306000 Rh2DG342400
rosa_wichuraiana	Rw2G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AarI	CACCTGC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	455
AccB1I	GGYRCC	2 cut(s)	158, 414
AccI	GTMKAC	1 cut(s)	68
AciI	CCGC	4 cut(s)	5, 37, 551, 585
AclWI	GGATC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	250, 377, 449
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	4 cut(s)	56, 137, 266, 452
AluI	AGCT	4 cut(s)	56, 137, 266, 452
Alw26I	GTCTC	2 cut(s)	299, 310
AlwI	GGATC	1 cut(s)	419
AlwNI	CAGNNNCTG	1 cut(s)	239
ApeKI	GCWGC	4 cut(s)	53, 56, 274, 582
ApoI	RAATTY	1 cut(s)	490
ArsI	GACNNNNNNTTYG	2 cut(s)	465, 497
AspS9I	GGNCC	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	118, 131
AvaII	GGWCC	1 cut(s)	108
BanI	GGYRCC	2 cut(s)	158, 414
BbsI	GAAGAC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	4 cut(s)	43, 65, 286, 594
BccI	CCATC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BcoDI	GTCTC	2 cut(s)	299, 310
BfmI	CTRYAG	3 cut(s)	25, 51, 100
BfuAI	ACCTGC	1 cut(s)	455
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	5 cut(s)	6, 54, 57, 275, 583
BlsI	GCNGC	5 cut(s)	7, 55, 58, 276, 584
BmcAI	AGTACT	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	3 cut(s)	110, 160, 416
BmsI	GCATC	3 cut(s)	139, 421, 538
BpiI	GAAGAC	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	355
BseDI	CCNNGG	1 cut(s)	278
BseMII	CTCAG	7 cut(s)	191, 203, 231, 246, 310, 380, 426
BseNI	ACTGG	1 cut(s)	355
BseXI	GCAGC	4 cut(s)	43, 65, 286, 594
BshNI	GGYRCC	2 cut(s)	158, 414
BslFI	GGGAC	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	299, 310
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	287, 341, 424
BspACI	CCGC	4 cut(s)	5, 37, 551, 585
BspCNI	CTCAG	7 cut(s)	190, 202, 232, 245, 309, 379, 427
BspLI	GGNNCC	3 cut(s)	110, 160, 416
BspMAI	CTGCAG	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	419
BspT107I	GGYRCC	2 cut(s)	158, 414
BspTNI	GGTCTC	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	3 cut(s)	287, 341, 424
BssT1I	CCWWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	119
BstDEI	CTNAG	8 cut(s)	177, 189, 232, 240, 296, 366, 435, 455
BstKTI	GATC	3 cut(s)	290, 344, 427
BstMAI	GTCTC	2 cut(s)	299, 310
BstMBI	GATC	3 cut(s)	287, 341, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstSFI	CTRYAG	3 cut(s)	25, 51, 100
BstV1I	GCAGC	4 cut(s)	43, 65, 286, 594
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	564
BveI	ACCTGC	1 cut(s)	455
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	370
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	8 cut(s)	177, 189, 232, 240, 296, 366, 435, 455
DpnI	GATC	3 cut(s)	289, 343, 426
DpnII	GATC	3 cut(s)	287, 341, 424
Eco130I	CCWWGG	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	278
Esp3I	CGTCTC	1 cut(s)	299
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FaqI	GGGAC	1 cut(s)	94
FauI	CCCGC	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	5 cut(s)	6, 54, 57, 275, 583
Fsp4HI	GCNGC	5 cut(s)	6, 54, 57, 275, 583
GluI	GCNGC	5 cut(s)	6, 54, 57, 275, 583
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HinfI	GANTC	2 cut(s)	65, 362
HphI	GGTGA	2 cut(s)	118, 131
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	5 cut(s)	192, 235, 299, 341, 361
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	1 cut(s)	69
Hpy99I	CGWCG	2 cut(s)	73, 76
HpyAV	CCTTC	1 cut(s)	183
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	53, 59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	8 cut(s)	177, 189, 232, 240, 296, 366, 435, 455
Kzo9I	GATC	3 cut(s)	287, 341, 424
LpnPI	CCDG	4 cut(s)	336, 441, 450, 506
Lsp1109I	GCAGC	4 cut(s)	43, 65, 286, 594
LweI	GCATC	3 cut(s)	139, 421, 538
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	3 cut(s)	289, 343, 426
MboI	GATC	3 cut(s)	287, 341, 424
MboII	GAAGA	4 cut(s)	27, 107, 336, 389
MfeI	CAATTG	1 cut(s)	60
MflI	RGATCY	1 cut(s)	287
MluCI	AATT	3 cut(s)	60, 490, 529
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	6 cut(s)	32, 99, 173, 229, 430, 522
MseI	TTAA	3 cut(s)	506, 527, 613
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	3 cut(s)	37, 56, 585
MunI	CAATTG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	563
NdeII	GATC	3 cut(s)	287, 341, 424
NlaIV	GGNNCC	3 cut(s)	110, 160, 416
NmuCI	GTSAC	1 cut(s)	119
OliI	CACNNNNGTG	1 cut(s)	420
PaqCI	CACCTGC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	5 cut(s)	7, 55, 58, 276, 584
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	108
PsiI	TTATAA	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	108
PspN4I	GGNNCC	3 cut(s)	110, 160, 416
PspPI	GGNCC	1 cut(s)	108
PspPPI	RGGWCCY	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	420
SalI	GTCGAC	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	506, 527, 613
SatI	GCNGC	5 cut(s)	6, 54, 57, 275, 583
Sau3AI	GATC	3 cut(s)	287, 341, 424
Sau96I	GGNCC	1 cut(s)	108
ScaI	AGTACT	1 cut(s)	371
SchI	GAGTC	1 cut(s)	74
SfaNI	GCATC	3 cut(s)	139, 421, 538
SfcI	CTRYAG	3 cut(s)	25, 51, 100
SinI	GGWCC	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	3 cut(s)	60, 490, 529
SsiI	CCGC	4 cut(s)	5, 37, 551, 585
SspI	AATATT	1 cut(s)	607
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	68
TasI	AATT	3 cut(s)	60, 490, 529
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	3 cut(s)	506, 527, 613
Tru9I	TTAA	3 cut(s)	506, 527, 613
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	4 cut(s)	53, 56, 274, 582
Tsp45I	GTSAC	1 cut(s)	119
TspRI	CASTG	1 cut(s)	564
VpaK11BI	GGWCC	1 cut(s)	108
XapI	RAATTY	1 cut(s)	490
XmiI	GTMKAC	1 cut(s)	68
ZrmI	AGTACT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.