Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007794

Physical Location & Seq

Genomic Coordinates Forward (+)

39215813 .. 39219722

Gene Structure 3910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG323800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCGGCAATAATGTCAACCAGAACAAACCTCTTTAGGCTTCTCACCGCCGGAACACCAATTTTAGGATTCTCAAATGTTCAGCTGCGTTATTCGTCGTCCGCTGCTGGGATTGGGTCGAGGCAGATAGACATGGGGGGCGTGAAAGATTATGAAGACTATAGGAGGTCTCTTTACGGTGAAATCACGCACAGGGCTCTGCTTGTTGATGCTGTAGGCACCCTTGTTGTTCCTTCTCAGCCAATGGCTCAGATATATAGGAAGATAGGGGAGAAGTATGGGGTGGAGTACTCAGAGGCCGAGATTTTGAACAGATACAGACGGGCTTACCAGCAGCCTTGGGGCAGATCTCGTCTCAGATATGTAAATGATGGGAGACCCTTTTGGCAACATATAGTCCGTTCTTCTACTGGTTGTTCAGATTCTCAGTACTTTGAAGAACTTTATAACTACTATACAACTAACAAGGCTTGGCACCTCTGTGATCCTGATGCTGAGAAAGTATTTGAAGCTCTAAGAAAAGAAGGTGTCAAAGTAGCAGTTGTGTCAAATTTTGATACCCGGTTAAGACCTCTTTTGCAGGCTCTAAATTGTGAACATTGGTTTGATGCAGTAGCAGTGTCAGCAGAAGTAGAAGCCGAGAAGCCAAATCCCACAATATTTATTAAAGCTTGTGAGTTATTAGGGGTAAAACCTGAGGATGCTGTGCATGTGGGGGATGATCGTAGGAATGATATATGGGGTGCTAGAGATGCAGGTTGTGATGCTTGGCTTTGGGGAAGTGATGTTCATTCCTTTAAGGAGGTATGTTCTGAACATCTGATCCCATCTCTTCTAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

280

Amino Acids

31.72

Weight (kDa)

6.19

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	65 - 253	3.9e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	125 - 255	1.2e-16	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	215 - 268	5.4e-09	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41250
fragaria_vesca	FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490 FvH4_6g25490
malus_domestica	MD12G1093300.v1.1 MD14G1085300.v1.1
prunus_persica	Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1 Prupe.7G041200_v2.0.a1
pyrus_communis	pycom12g07860 pycom14g07490
rosa_chinensis	RchiOBHm_Chr2g0125431
rosa_laevigata	RLG00000018866
rosa_multiflora	Rmu_sc0005508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118000
rosa_rugosa	Rorug02G0257400
rosa_samantha	Rh2AG316300 Rh2BG323800 Rh2CG306000 Rh2DG342400
rosa_wichuraiana	Rw2G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
Acc36I	ACCTGC	1 cut(s)	746
AccB1I	GGYRCC	2 cut(s)	218, 474
AciI	CCGC	3 cut(s)	5, 48, 102
AclWI	GGATC	2 cut(s)	479, 817
AcsI	RAATTY	1 cut(s)	550
AfaI	GTAC	2 cut(s)	290, 431
AfiI	CCNNNNNNNGG	2 cut(s)	65, 108
AgsI	TTSAA	3 cut(s)	310, 437, 509
AleI	CACNNNNGTG	1 cut(s)	480
AloI	GAACNNNNNNTCC	4 cut(s)	771, 803, 807, 839
AluBI	AGCT	3 cut(s)	85, 512, 671
AluI	AGCT	3 cut(s)	85, 512, 671
Alw26I	GTCTC	3 cut(s)	174, 359, 370
AlwI	GGATC	2 cut(s)	479, 817
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	3 cut(s)	85, 104, 334
ApoI	RAATTY	1 cut(s)	550
AsuC2I	CCSGG	1 cut(s)	562
AsuHPI	GGTGA	2 cut(s)	37, 191
AxyI	CCTNAGG	1 cut(s)	696
BanI	GGYRCC	2 cut(s)	218, 474
BanII	GRGCYC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	72, 91, 346
BccI	CCATC	2 cut(s)	365, 835
BcnI	CCSGG	1 cut(s)	562
BcoDI	GTCTC	3 cut(s)	174, 359, 370
BfaI	CTAG	2 cut(s)	747, 836
BfmI	CTRYAG	2 cut(s)	160, 213
BfuAI	ACCTGC	1 cut(s)	746
BglII	AGATCT	1 cut(s)	347
BisI	GCNGC	4 cut(s)	6, 86, 105, 335
BlsI	GCNGC	4 cut(s)	7, 87, 106, 336
BmcAI	AGTACT	2 cut(s)	290, 431
Bme1390I	CCNGG	1 cut(s)	562
BmiI	GGNNCC	2 cut(s)	220, 476
BmrFI	CCNGG	1 cut(s)	562
BmsI	GCATC	6 cut(s)	199, 481, 598, 691, 742, 754
BpiI	GAAGAC	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	562
BsaI	GGTCTC	2 cut(s)	174, 370
BsaJI	CCNNGG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 108
Bse1I	ACTGG	1 cut(s)	415
Bse21I	CCTNAGG	1 cut(s)	696
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	2 cut(s)	706, 724
BseLI	CCNNNNNNNGG	2 cut(s)	65, 108
BseMII	CTCAG	7 cut(s)	251, 263, 306, 370, 440, 486, 687
BseNI	ACTGG	1 cut(s)	415
BseXI	GCAGC	3 cut(s)	72, 91, 346
BseYI	CCCAGC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	299
BshNI	GGYRCC	2 cut(s)	218, 474
BsiSI	CCGG	2 cut(s)	51, 562
BslI	CCNNNNNNNGG	2 cut(s)	65, 108
BsmAI	GTCTC	3 cut(s)	174, 359, 370
BsmBI	CGTCTC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	299
Bso31I	GGTCTC	2 cut(s)	174, 370
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	4 cut(s)	347, 484, 721, 822
BspACI	CCGC	3 cut(s)	5, 48, 102
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	7 cut(s)	250, 262, 305, 369, 439, 487, 688
BspLI	GGNNCC	2 cut(s)	220, 476
BspMI	ACCTGC	1 cut(s)	746
BspPI	GGATC	2 cut(s)	479, 817
BspT107I	GGYRCC	2 cut(s)	218, 474
BspTNI	GGTCTC	2 cut(s)	174, 370
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	4 cut(s)	347, 484, 721, 822
BssT1I	CCWWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	837
BstC8I	GCNNGC	1 cut(s)	582
BstDEI	CTNAG	8 cut(s)	237, 249, 292, 356, 426, 495, 515, 696
BstF5I	GGATG	2 cut(s)	706, 724
BstKTI	GATC	4 cut(s)	350, 487, 724, 825
BstMAI	GTCTC	3 cut(s)	174, 359, 370
BstMBI	GATC	4 cut(s)	347, 484, 721, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	623, 752
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	560
BstSFI	CTRYAG	2 cut(s)	160, 213
BstV1I	GCAGC	3 cut(s)	72, 91, 346
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
Bsu36I	CCTNAGG	1 cut(s)	696
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	2 cut(s)	706, 724
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	1 cut(s)	624
BveI	ACCTGC	1 cut(s)	746
Cac8I	GCNNGC	1 cut(s)	582
Csp6I	GTAC	2 cut(s)	289, 430
CviAII	CATG	2 cut(s)	133, 710
CviQI	GTAC	2 cut(s)	289, 430
DdeI	CTNAG	8 cut(s)	237, 249, 292, 356, 426, 495, 515, 696
DpnI	GATC	4 cut(s)	349, 486, 723, 824
DpnII	GATC	4 cut(s)	347, 484, 721, 822
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
Eco130I	CCWWGG	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	199
Eco31I	GGTCTC	2 cut(s)	174, 370
Eco81I	CCTNAGG	1 cut(s)	696
EcoT14I	CCWWGG	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	338
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	2 cut(s)	136, 713
FatI	CATG	2 cut(s)	132, 709
Fnu4HI	GCNGC	4 cut(s)	6, 86, 105, 335
FokI	GGATG	2 cut(s)	713, 731
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	4 cut(s)	6, 86, 105, 335
FspBI	CTAG	2 cut(s)	747, 836
GluI	GCNGC	4 cut(s)	6, 86, 105, 335
GsaI	CCCAGC	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	2 cut(s)	51, 562
Hin1II	CATG	2 cut(s)	136, 713
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	2 cut(s)	69, 422
HpaII	CCGG	2 cut(s)	51, 562
HphI	GGTGA	2 cut(s)	37, 191
Hpy166II	GTNNAC	2 cut(s)	18, 596
Hpy188I	TCNGA	6 cut(s)	252, 295, 359, 421, 814, 822
Hpy188III	TCNNGA	1 cut(s)	488
Hpy8I	GTNNAC	2 cut(s)	18, 596
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	243, 518
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	4 cut(s)	580, 611, 709, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	623, 752
HpyF3I	CTNAG	8 cut(s)	237, 249, 292, 356, 426, 495, 515, 696
Hsp92II	CATG	2 cut(s)	136, 713
Kzo9I	GATC	4 cut(s)	347, 484, 721, 822
Lsp1109I	GCAGC	3 cut(s)	72, 91, 346
LweI	GCATC	6 cut(s)	199, 481, 598, 691, 742, 754
MaeI	CTAG	2 cut(s)	747, 836
MalI	GATC	4 cut(s)	349, 486, 723, 824
MboI	GATC	4 cut(s)	347, 484, 721, 822
MboII	GAAGA	5 cut(s)	167, 274, 396, 449, 824
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	3 cut(s)	60, 550, 589
MnlI	CCTC	8 cut(s)	41, 114, 159, 289, 488, 582, 691, 796
MseI	TTAA	3 cut(s)	566, 666, 798
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	2 cut(s)	85, 104
MspI	CCGG	2 cut(s)	51, 562
MspR9I	CCNGG	1 cut(s)	562
MwoI	GCNNNNNNNGC	2 cut(s)	623, 752
NciI	CCSGG	1 cut(s)	562
NdeII	GATC	4 cut(s)	347, 484, 721, 822
NlaIII	CATG	2 cut(s)	136, 713
NlaIV	GGNNCC	2 cut(s)	220, 476
NmeAIII	GCCGAG	2 cut(s)	325, 664
NspI	RCATGY	1 cut(s)	713
OliI	CACNNNNGTG	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	69, 422
PkrI	GCNGC	4 cut(s)	7, 87, 106, 336
PsiI	TTATAA	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	220, 476
PsuI	RGATCY	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	2 cut(s)	290, 431
RsaNI	GTAC	2 cut(s)	289, 430
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	3 cut(s)	566, 666, 798
SatI	GCNGC	4 cut(s)	6, 86, 105, 335
Sau3AI	GATC	4 cut(s)	347, 484, 721, 822
ScaI	AGTACT	2 cut(s)	290, 431
ScrFI	CCNGG	1 cut(s)	562
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	6 cut(s)	199, 481, 598, 691, 742, 754
SfcI	CTRYAG	2 cut(s)	160, 213
SmiMI	CAYNNNNRTG	1 cut(s)	480
Sse9I	AATT	3 cut(s)	60, 550, 589
SsiI	CCGC	3 cut(s)	5, 48, 102
SspI	AATATT	1 cut(s)	660
SspMI	CTAG	2 cut(s)	747, 836
StyD4I	CCNGG	1 cut(s)	560
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	60, 550, 589
TatI	WGTACW	2 cut(s)	288, 429
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	69, 422
Tru1I	TTAA	3 cut(s)	566, 666, 798
Tru9I	TTAA	3 cut(s)	566, 666, 798
TscAI	CASTG	1 cut(s)	624
TseI	GCWGC	3 cut(s)	85, 104, 334
TspDTI	ATGAA	2 cut(s)	168, 779
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	624
XapI	RAATTY	1 cut(s)	550
XceI	RCATGY	1 cut(s)	713
XspI	CTAG	2 cut(s)	747, 836
ZrmI	AGTACT	2 cut(s)	290, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.