AT2G41380

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004800
Physical Location & Seq
Forward (+)
17251819 .. 17253194
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41380.1

Sequence Viewer

Length: 810 bp
ATGGCGAAATTATTCATCAAGCAAGCAGAGCAATATGCAGCAGCCCGACCCAGTTACCCCACCAAACTCTTCGAATATATCGCATCGAAAACACCGTGCCACGACCTTGCCTGGGACGTTGGCGCCGGAAGCGGCCAAGCCTCACGATCGCTAGCCGGAATCTACAAGAACGTGATTGCTACAGACACGAGCTCAAAGCAACTTGAATTTGCTGCAAAGCTTCCCAACGTCCGTTACGAGATCACTCCACCGACGATGTCTTCATCGGAGATCGAGAAGCTAGTAGCACCTGAATCATCAGTTGATTTAGTCACCGTCGCTCAAGCCCTTCATTGGTTCGACCTCACGAACTTTTACAGCAACGTGAAACACGTGCTCAAGAAACCCAACGGAGTAATCGCCGCCTGGTGCTACACCAATCCGGAAGTTAACGACGCCGTGGACAAGGTCTTTCAACGGTTTTACGATGAGAAACTTGGTCCTCATTGGGATCTAGCGCGACGGCTTGTGGAGGATGGGTACAGAGGAATTGAGTTTCCGTTCGAGAAAGTGGATAATGATGAGTCAACGGAAAGTCAAAGTTTTCCGGTGAGGTTTGTAACGGAGAAAGAAATGGTGTTTGAAGAGTATATGACGTATCTGAGGTCATCTTCGGCGTATCAGACGGCTAAGGAGAAAGGTTTAGAGCTTTTGACGGCTGAGATGGAAGGAGAGTTTGCTGGTTCGTGGAAAGAAGATGGGAAAGAGAAGAAAGTTGTTAGGTATCCGATTTATCTGTTGATCGGAAGAGTTGCAGAAGAACGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

269

Amino Acids

30.56

Weight (kDa)

5.34

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_11 PF08241 39 - 133 1.4e-12 Methyltransferase domain
Methyltransf_25 PF13649 39 - 128 2.1e-09 Methyltransferase domain
Methyltransf_12 PF08242 39 - 132 1.2e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccII CGCG 1 cut(s) 499
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 2 cut(s) 132, 402
AclWI GGATC 1 cut(s) 498
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 1 cut(s) 206
AcvI CACGTG 1 cut(s) 373
AcyI GRCGYC 2 cut(s) 123, 435
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 2 cut(s) 112, 333
AflIII ACRYGT 2 cut(s) 370, 802
AgsI TTSAA 3 cut(s) 206, 455, 623
AjnI CCWGG 2 cut(s) 110, 404
AluBI AGCT 4 cut(s) 192, 220, 280, 688
AluI AGCT 4 cut(s) 192, 220, 280, 688
Alw21I GWGCWC 2 cut(s) 194, 378
AlwI GGATC 1 cut(s) 498
Aor13HI TCCGGA 1 cut(s) 421
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 3 cut(s) 38, 41, 212
ApoI RAATTY 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 2 cut(s) 125, 499
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 304, 601
AsuII TTCGAA 1 cut(s) 72
AsuNHI GCTAGC 1 cut(s) 151
AvaII GGWCC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 194
BauI CACGAG 1 cut(s) 187
BbrPI CACGTG 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 2 cut(s) 194, 378
BbvI GCAGC 3 cut(s) 50, 53, 199
BccI CCATC 3 cut(s) 509, 697, 731
BceAI ACGGC 4 cut(s) 422, 518, 681, 711
BciT130I CCWGG 2 cut(s) 112, 406
BciVI GTATCC 1 cut(s) 774
BfaI CTAG 3 cut(s) 152, 281, 494
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 126
BfuI GTATCC 1 cut(s) 774
BisI GCNGC 5 cut(s) 39, 42, 133, 213, 402
BlsI GCNGC 5 cut(s) 40, 43, 134, 214, 403
Bme1390I CCNGG 2 cut(s) 112, 406
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 112, 406
BmrI ACTGGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 92
BmtI GCTAGC 1 cut(s) 155
BmuI ACTGGG 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 669
Bpu14I TTCGAA 1 cut(s) 72
BpuEI CTTGAG 2 cut(s) 306, 362
BsaAI YACGTR 1 cut(s) 373
BsaHI GRCGYC 2 cut(s) 123, 435
BsaJI CCNNGG 2 cut(s) 111, 438
BsaWI WCCGGW 2 cut(s) 421, 586
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 333
Bse1I ACTGG 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 2 cut(s) 112, 406
BseDI CCNNGG 2 cut(s) 111, 438
BseGI GGATG 1 cut(s) 520
BseLI CCNNNNNNNGG 2 cut(s) 112, 333
BseMII CTCAG 2 cut(s) 632, 690
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 3 cut(s) 50, 53, 199
Bsh1236I CGCG 1 cut(s) 499
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 1 cut(s) 135
BshNI GGYRCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 149
BsiHKAI GWGCWC 2 cut(s) 194, 378
BsiSI CCGG 4 cut(s) 126, 156, 422, 587
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 112, 333
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 135
Bsp119I TTCGAA 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 194, 378
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 5 cut(s) 146, 240, 270, 490, 780
BspACI CCGC 2 cut(s) 132, 402
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 2 cut(s) 633, 691
BspEI TCCGGA 1 cut(s) 421
BspFNI CGCG 1 cut(s) 499
BspLI GGNNCC 1 cut(s) 124
BspOI GCTAGC 1 cut(s) 155
BspPI GGATC 1 cut(s) 498
BspT104I TTCGAA 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 111, 438
BssMI GATC 5 cut(s) 146, 240, 270, 490, 780
BssNI GRCGYC 2 cut(s) 123, 435
BssSI CACGAG 1 cut(s) 187
Bst2BI CACGAG 1 cut(s) 187
Bst2UI CCWGG 2 cut(s) 112, 406
Bst4CI ACNGT 3 cut(s) 96, 316, 459
Bst6I CTCTTC 3 cut(s) 74, 618, 781
BstACI GRCGYC 2 cut(s) 123, 435
BstBAI YACGTR 1 cut(s) 373
BstBI TTCGAA 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 24, 153
BstDEI CTNAG 3 cut(s) 641, 669, 699
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 1 cut(s) 520
BstFNI CGCG 1 cut(s) 499
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 2 cut(s) 125, 499
BstKTI GATC 5 cut(s) 149, 243, 273, 493, 783
BstMBI GATC 5 cut(s) 146, 240, 270, 490, 780
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 2 cut(s) 28, 129
BstNI CCWGG 2 cut(s) 112, 406
BstSCI CCNGG 2 cut(s) 110, 404
BstSFI CTRYAG 1 cut(s) 180
BstUI CGCG 1 cut(s) 499
BstV1I GCAGC 3 cut(s) 50, 53, 199
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuI GTATCC 1 cut(s) 774
BsuRI GGCC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 24, 153
CfoI GCGC 2 cut(s) 125, 499
Cfr13I GGNCC 1 cut(s) 479
CseI GACGC 1 cut(s) 443
Csp6I GTAC 1 cut(s) 520
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 3 cut(s) 641, 669, 699
DinI GGCGCC 1 cut(s) 124
DpnI GATC 5 cut(s) 148, 242, 272, 492, 782
DpnII GATC 5 cut(s) 146, 240, 270, 490, 780
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 3 cut(s) 74, 618, 781
EarI CTCTTC 3 cut(s) 74, 618, 781
Ecl136II GAGCTC 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 192
Eco72I CACGTG 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 110, 404
EcoT38I GRGCYC 1 cut(s) 194
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
FaiI YATR 5 cut(s) 36, 78, 630, 632, 808
FaqI GGGAC 1 cut(s) 128
Fnu4HI GCNGC 5 cut(s) 39, 42, 133, 213, 402
FokI GGATG 1 cut(s) 527
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 5 cut(s) 39, 42, 133, 213, 402
FspBI CTAG 3 cut(s) 152, 281, 494
GlaI GCGC 2 cut(s) 124, 498
GluI GCNGC 5 cut(s) 39, 42, 133, 213, 402
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 1 cut(s) 135
HapII CCGG 4 cut(s) 126, 156, 422, 587
HgaI GACGC 1 cut(s) 443
HhaI GCGC 2 cut(s) 125, 499
Hin1I GRCGYC 2 cut(s) 123, 435
Hin6I GCGC 2 cut(s) 123, 497
HinP1I GCGC 2 cut(s) 123, 497
HincII GTYRAC 2 cut(s) 430, 567
HindII GTYRAC 2 cut(s) 430, 567
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 3 cut(s) 159, 293, 563
HpaI GTTAAC 1 cut(s) 430
HpaII CCGG 4 cut(s) 126, 156, 422, 587
HphI GGTGA 2 cut(s) 304, 601
Hpy166II GTNNAC 3 cut(s) 430, 442, 567
Hpy188I TCNGA 5 cut(s) 268, 642, 663, 768, 785
Hpy188III TCNNGA 6 cut(s) 144, 274, 346, 379, 422, 544
Hpy8I GTNNAC 3 cut(s) 430, 442, 567
Hpy99I CGWCG 4 cut(s) 256, 320, 437, 504
HpyAV CCTTC 2 cut(s) 338, 701
HpyCH4III ACNGT 3 cut(s) 96, 316, 459
HpyCH4IV ACGT 7 cut(s) 117, 171, 228, 363, 372, 635, 802
HpyCH4V TGCA 3 cut(s) 38, 215, 794
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 129
HpyF3I CTNAG 3 cut(s) 641, 669, 699
HpySE526I ACGT 7 cut(s) 117, 171, 228, 363, 372, 635, 802
Hsp92I GRCGYC 2 cut(s) 123, 435
HspAI GCGC 2 cut(s) 123, 497
KasI GGCGCC 1 cut(s) 122
Kpn2I TCCGGA 1 cut(s) 421
KspAI GTTAAC 1 cut(s) 430
Kzo9I GATC 5 cut(s) 146, 240, 270, 490, 780
Lsp1109I GCAGC 3 cut(s) 50, 53, 199
LweI GCATC 1 cut(s) 92
MaeI CTAG 3 cut(s) 152, 281, 494
MaeII ACGT 7 cut(s) 117, 171, 228, 363, 372, 635, 802
MaeIII GTNAC 4 cut(s) 53, 233, 310, 598
MalI GATC 5 cut(s) 148, 242, 272, 492, 782
MboI GATC 5 cut(s) 146, 240, 270, 490, 780
MboII GAAGA 8 cut(s) 61, 252, 635, 642, 746, 760, 798, 809
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 2 cut(s) 194, 378
MluCI AATT 3 cut(s) 8, 206, 528
Mly113I GGCGCC 1 cut(s) 123
MlyI GAGTC 1 cut(s) 572
MnlI CCTC 7 cut(s) 151, 353, 492, 505, 518, 585, 636
MroI TCCGGA 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 1 cut(s) 429
MspI CCGG 4 cut(s) 126, 156, 422, 587
MspR9I CCNGG 2 cut(s) 112, 406
MvaI CCWGG 2 cut(s) 112, 406
MvnI CGCG 1 cut(s) 499
MwoI GCNNNNNNNGC 2 cut(s) 28, 129
NarI GGCGCC 1 cut(s) 123
NdeII GATC 5 cut(s) 146, 240, 270, 490, 780
NheI GCTAGC 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 310
NspV TTCGAA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 3 cut(s) 92, 234, 369
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 2 cut(s) 159, 293
PflFI GACNNNGTC 2 cut(s) 256, 446
PkrI GCNGC 5 cut(s) 40, 43, 134, 214, 403
Ple19I CGATCG 1 cut(s) 149
PleI GAGTC 1 cut(s) 571
PluTI GGCGCC 1 cut(s) 126
PmaCI CACGTG 1 cut(s) 373
PmlI CACGTG 1 cut(s) 373
PpsI GAGTC 1 cut(s) 571
Ppu21I YACGTR 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 110, 404
PspCI CACGTG 1 cut(s) 373
PspGI CCWGG 2 cut(s) 110, 404
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 479
PsuI RGATCY 1 cut(s) 490
PsyI GACNNNGTC 2 cut(s) 256, 446
PvuI CGATCG 1 cut(s) 149
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
SacI GAGCTC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 5 cut(s) 39, 42, 133, 213, 402
Sau3AI GATC 5 cut(s) 146, 240, 270, 490, 780
Sau96I GGNCC 1 cut(s) 479
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 2 cut(s) 112, 406
SduI GDGCHC 2 cut(s) 194, 378
SfaNI GCATC 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 180
SfoI GGCGCC 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 72
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 2 cut(s) 321, 377
SmoI CTYRAG 2 cut(s) 321, 377
Sse9I AATT 3 cut(s) 8, 206, 528
SsiI CCGC 2 cut(s) 132, 402
SspDI GGCGCC 1 cut(s) 122
SspMI CTAG 3 cut(s) 152, 281, 494
SstI GAGCTC 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 110, 404
TaaI ACNGT 3 cut(s) 96, 316, 459
TaiI ACGT 7 cut(s) 120, 174, 231, 366, 375, 638, 805
TaqI TCGA 5 cut(s) 72, 86, 273, 339, 543
TasI AATT 3 cut(s) 8, 206, 528
TauI GCSGC 2 cut(s) 135, 404
TfiI GAWTC 2 cut(s) 159, 293
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 3 cut(s) 38, 41, 212
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 4, 252, 320
TspGWI ACGGA 5 cut(s) 221, 405, 528, 584, 617
Tth111I GACNNNGTC 2 cut(s) 256, 446
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 3 cut(s) 152, 281, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.