Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004800

Physical Location & Seq

Genomic Coordinates Reverse (-)

920697 .. 923085

Gene Structure 2389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGAATCTGTTCCTCAAACAATCAAAGCAGTACGTCGTGGCTCGGCCAGGTTACCCAGAAAAGCTGTTTCAGTTCATTGCTTCCAAGGCTGCCGCCCACGACCTTGCTTGGGACGTCGGCACCGGTAGTGGCCAGGCTGCCCGACCCCTGGCTGAGATCTTCAAGAATGTGGTGGCCACAGACACAAGCCAAAAGCAACTCGAATGCGCTCCAAAACTCCCCAATGTTCGCTACGTGCACACTCCTGCAGTGCTGACCATACCCGAAATTGAACAAAAACTGGCTCCAAAATCTAGTGTTGATTTAGTGACCATTGCACAAGCCCTGCATTGGTTTGACCTCCCTAGTTTCTATGAACAAGTGAAATGGGTGCTCAAGAAACCAAACGGGGTCATTGCTGCATGGTGCTACACTGTGCCTAGAGTTAACAACACTGTAGACACTGTCTTCGATCGGTTCTATTCCATTGATGTCGAACCCTACTGGGAACCGCCGCGTAAATTAGTGGACAACAAGTACAGCACCATCGATTTTCCGTTTGAGCTGGTTAGCGGAGAAGGAAGTACAGGACCGTTCGAGTTTGCGACGGAGATATTGATGGGTTTGGATGATTTTTTCACGTATATAAGGTCGTGGTCAGCTTATCAGACTGCTAAGGACAAGGGTGTTGAGCTTCTGAATGAGGATGTGATGGAACAATTTAAGCAAGCCTGGAATGTTGATGGTGGAGATGGACAGAAGGTTGTGAACTATCCTATCAATTTAAGAATTGGAAGAGTGGGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

264

Amino Acids

29.68

Weight (kDa)

5.5

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 133	8.3e-11	Methyltransferase domain
Methyltransf_12	PF08242	39 - 132	1.1e-08	Methyltransferase domain
Methyltransf_25	PF13649	39 - 128	1.5e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41380
fragaria_vesca	FvH4_3g01760 FvH4_3g01780
malus_domestica	MD14G1084000.v1.1
prunus_persica	Prupe.7G045000_v2.0.a1
pyrus_communis	pycom14g07380 pycom14g07470
rosa_chinensis	RchiOBHm_Chr5g0002601 RchiOBHm_Chr5g0063371 RchiOBHm_Chr6g0309701
rosa_laevigata	RLG00000031046 RLG00000035630
rosa_multiflora	Rmu_sc0006795.1_g000004 Rmu_sc0009084.1_g000008 Rmu_sc0011295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017330 Rroxscaffold_1G00073250
rosa_rugosa	Rorug04G0397600 Rorug04G0397600 Rorug05G0356800 Rorug05G0356900
rosa_samantha	Rh5AG021100 Rh5AG416200 Rh5BG023800 Rh5CG023200 Rh5CG454600 Rh5DG022200 Rh5DG444800 Rh6AG487400
rosa_wichuraiana	Rw5G001950 Rw5G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	1 cut(s)	499
AciI	CCGC	4 cut(s)	96, 494, 497, 555
AcoI	YGGCCR	3 cut(s)	47, 133, 177
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	3 cut(s)	35, 521, 568
AfiI	CCNNNNNNNGG	3 cut(s)	112, 151, 333
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	166, 275
AjnI	CCWGG	4 cut(s)	49, 135, 150, 713
AluBI	AGCT	4 cut(s)	67, 547, 644, 676
AluI	AGCT	4 cut(s)	67, 547, 644, 676
Alw21I	GWGCWC	2 cut(s)	243, 378
Alw44I	GTGCAC	1 cut(s)	239
AoxI	GGCC	3 cut(s)	47, 133, 177
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	3 cut(s)	92, 140, 401
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AsiGI	ACCGGT	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	572
BaeGI	GKGCMC	1 cut(s)	243
BalI	TGGCCA	2 cut(s)	135, 179
BanI	GGYRCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	442
Bbv12I	GWGCWC	2 cut(s)	243, 378
BbvI	GCAGC	3 cut(s)	79, 127, 388
BccI	CCATC	5 cut(s)	536, 595, 688, 719, 728
BciT130I	CCWGG	4 cut(s)	51, 137, 152, 715
BfaI	CTAG	3 cut(s)	297, 348, 423
BfmI	CTRYAG	2 cut(s)	249, 438
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	5 cut(s)	93, 96, 141, 402, 497
BlsI	GCNGC	5 cut(s)	94, 97, 142, 403, 498
Bme1390I	CCNGG	4 cut(s)	51, 137, 152, 715
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	3 cut(s)	124, 288, 492
BmrFI	CCNGG	4 cut(s)	51, 137, 152, 715
BmrI	ACTGGG	1 cut(s)	496
BmuI	ACTGGG	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	442
Bpu10I	CCTNAGC	1 cut(s)	657
BpuEI	CTTGAG	1 cut(s)	362
Bsa29I	ATCGAT	1 cut(s)	531
BsaAI	YACGTR	2 cut(s)	238, 624
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	87, 150
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 151, 333
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	288, 491
Bse3DI	GCAATG	3 cut(s)	78, 315, 396
BseBI	CCWGG	4 cut(s)	51, 137, 152, 715
BseCI	ATCGAT	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	87, 150
BseGI	GGATG	2 cut(s)	616, 694
BseLI	CCNNNNNNNGG	3 cut(s)	112, 151, 333
BseMI	GCAATG	3 cut(s)	78, 315, 396
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	288, 491
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	3 cut(s)	79, 127, 388
Bsh1236I	CGCG	1 cut(s)	499
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	3 cut(s)	49, 135, 179
BshNI	GGYRCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	531
BsiEI	CGRYCG	1 cut(s)	457
BsiHKAI	GWGCWC	2 cut(s)	243, 378
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	3 cut(s)	112, 151, 333
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	49, 135, 179
Bsp1286I	GDGCHC	2 cut(s)	243, 378
Bsp143I	GATC	2 cut(s)	159, 454
BspACI	CCGC	4 cut(s)	96, 494, 497, 555
BspANI	GGCC	3 cut(s)	49, 135, 179
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	531
BspFNI	CGCG	1 cut(s)	499
BspLI	GGNNCC	3 cut(s)	124, 288, 492
BspMAI	CTGCAG	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	3 cut(s)	78, 315, 396
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	288, 491
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	87, 150
BssMI	GATC	2 cut(s)	159, 454
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	4 cut(s)	51, 137, 152, 715
Bst4CI	ACNGT	4 cut(s)	418, 439, 448, 576
Bst6I	CTCTTC	1 cut(s)	772
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	2 cut(s)	238, 624
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	2 cut(s)	156, 657
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	616, 694
BstFNI	CGCG	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	162, 457
BstMBI	GATC	2 cut(s)	159, 454
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	4 cut(s)	51, 137, 152, 715
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	4 cut(s)	49, 135, 150, 713
BstSFI	CTRYAG	2 cut(s)	249, 438
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	1 cut(s)	499
BstV1I	GCAGC	3 cut(s)	79, 127, 388
BstV2I	GAAGAC	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	531
BsuRI	GGCC	3 cut(s)	49, 135, 179
BsuTUI	ATCGAT	1 cut(s)	531
BtsCI	GGATG	2 cut(s)	616, 694
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	4 cut(s)	258, 414, 435, 444
Cac8I	GCNNGC	1 cut(s)	711
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	572
ClaI	ATCGAT	1 cut(s)	531
Csp6I	GTAC	3 cut(s)	34, 520, 567
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	1 cut(s)	405
CviQI	GTAC	3 cut(s)	34, 520, 567
DdeI	CTNAG	2 cut(s)	156, 657
DpnI	GATC	2 cut(s)	161, 456
DpnII	GATC	2 cut(s)	159, 454
EaeI	YGGCCR	3 cut(s)	47, 133, 177
Eam1104I	CTCTTC	1 cut(s)	772
EarI	CTCTTC	1 cut(s)	772
Eco130I	CCWWGG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	572
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRII	CCWGG	4 cut(s)	49, 135, 150, 713
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	408
FaiI	YATR	5 cut(s)	263, 357, 406, 627, 629
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	404
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	5 cut(s)	93, 96, 141, 402, 497
FokI	GGATG	2 cut(s)	623, 701
Fsp4HI	GCNGC	5 cut(s)	93, 96, 141, 402, 497
FspBI	CTAG	3 cut(s)	297, 348, 423
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	5 cut(s)	93, 96, 141, 402, 497
HaeIII	GGCC	3 cut(s)	49, 135, 179
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	408
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	7
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	5 cut(s)	241, 430, 442, 511, 751
Hpy188I	TCNGA	2 cut(s)	651, 681
Hpy188III	TCNNGA	2 cut(s)	166, 379
Hpy8I	GTNNAC	5 cut(s)	241, 430, 442, 511, 751
Hpy99I	CGWCG	3 cut(s)	41, 122, 592
HpyAV	CCTTC	2 cut(s)	554, 736
HpyCH4III	ACNGT	4 cut(s)	418, 439, 448, 576
HpyCH4IV	ACGT	4 cut(s)	36, 117, 237, 623
HpyCH4V	TGCA	5 cut(s)	241, 251, 320, 331, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	156, 657
HpySE526I	ACGT	4 cut(s)	36, 117, 237, 623
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	408
HspAI	GCGC	1 cut(s)	210
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	159, 454
LmnI	GCTCC	2 cut(s)	217, 292
Lsp1109I	GCAGC	3 cut(s)	79, 127, 388
MaeI	CTAG	3 cut(s)	297, 348, 423
MaeII	ACGT	4 cut(s)	36, 117, 237, 623
MaeIII	GTNAC	2 cut(s)	53, 310
MalI	GATC	2 cut(s)	161, 456
MboI	GATC	2 cut(s)	159, 454
MboII	GAAGA	3 cut(s)	154, 442, 789
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	2 cut(s)	243, 378
MlsI	TGGCCA	2 cut(s)	135, 179
MluCI	AATT	6 cut(s)	270, 503, 701, 763, 771, 787
MluNI	TGGCCA	2 cut(s)	135, 179
MnlI	CCTC	3 cut(s)	26, 353, 679
Mox20I	TGGCCA	2 cut(s)	135, 179
MroXI	GAANNNNTTC	1 cut(s)	11
MscI	TGGCCA	2 cut(s)	135, 179
MseI	TTAA	3 cut(s)	429, 705, 767
Msp20I	TGGCCA	2 cut(s)	135, 179
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	4 cut(s)	51, 137, 152, 715
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	4 cut(s)	51, 137, 152, 715
MvnI	CGCG	1 cut(s)	499
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	2 cut(s)	159, 454
NlaIII	CATG	1 cut(s)	408
NlaIV	GGNNCC	3 cut(s)	124, 288, 492
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	310
PctI	GAATGC	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	7
PflFI	GACNNNGTC	1 cut(s)	446
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	5 cut(s)	94, 97, 142, 403, 498
Ple19I	CGATCG	1 cut(s)	457
Ppu21I	YACGTR	2 cut(s)	238, 624
Psp6I	CCWGG	4 cut(s)	49, 135, 150, 713
PspEI	GGTNACC	1 cut(s)	53
PspGI	CCWGG	4 cut(s)	49, 135, 150, 713
PspN4I	GGNNCC	3 cut(s)	124, 288, 492
PspPI	GGNCC	1 cut(s)	572
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	159
PsyI	GACNNNGTC	1 cut(s)	446
PvuI	CGATCG	1 cut(s)	457
RsaI	GTAC	3 cut(s)	35, 521, 568
RsaNI	GTAC	3 cut(s)	34, 520, 567
SaqAI	TTAA	3 cut(s)	429, 705, 767
SatI	GCNGC	5 cut(s)	93, 96, 141, 402, 497
Sau3AI	GATC	2 cut(s)	159, 454
Sau96I	GGNCC	1 cut(s)	572
ScrFI	CCNGG	4 cut(s)	51, 137, 152, 715
SduI	GDGCHC	2 cut(s)	243, 378
SfcI	CTRYAG	2 cut(s)	249, 438
SinI	GGWCC	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	6 cut(s)	270, 503, 701, 763, 771, 787
SsiI	CCGC	4 cut(s)	96, 494, 497, 555
SspMI	CTAG	3 cut(s)	297, 348, 423
StyD4I	CCNGG	4 cut(s)	49, 135, 150, 713
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	4 cut(s)	418, 439, 448, 576
TaiI	ACGT	4 cut(s)	39, 120, 240, 626
TaqI	TCGA	5 cut(s)	204, 453, 477, 531, 579
TasI	AATT	6 cut(s)	270, 503, 701, 763, 771, 787
TatI	WGTACW	2 cut(s)	519, 566
TauI	GCSGC	2 cut(s)	98, 499
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	3 cut(s)	429, 705, 767
Tru9I	TTAA	3 cut(s)	429, 705, 767
TscAI	CASTG	4 cut(s)	258, 421, 442, 451
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	3 cut(s)	92, 140, 401
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	67, 372
TspGWI	ACGGA	2 cut(s)	528, 605
TspRI	CASTG	4 cut(s)	258, 421, 442, 451
Tth111I	GACNNNGTC	1 cut(s)	446
VneI	GTGCAC	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	441
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	3 cut(s)	297, 348, 423
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.