Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004800

Physical Location & Seq

Genomic Coordinates Reverse (-)

69067974 .. 69069184

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G039090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCGGATCTGTTCATCAAACAATCAAAGCAGTACGCTGTGGCTCGGCCAGGTTACTCAGAAAAGCTGCTTCAGTTCATTGCTTCCAAGGCTGCCGCCCACGACCTTGCATGGGACGTCGGCACCGGTAGTGGCCAGGCTGCCCGATCCCTAGCTGAGATCTTCTATAATGTGGTGGCAACAGACACAAGCCAAAAGCAACTTGAATGCGCTCCAAAACTCCCCAATGTTCGCTATGAGCACACTCCTCCGGTCCTGACCACACCTGAAATTGAACGAAAATTGGCCTCAAAATCTAGTACTGTTGATTTAGTGACCATTGCACAAGCCCTGCATTGGTTTGACCTCCCAAGTTTCTACGAGCAAGTGAAATGGGTGCTGAAGAAACCCCATGGGGTCATTGCTGCATGGTGCTACACTGTGCCTAGAGTTAACAACAATGTAGACACCGTCTTCGATCGGTTCTATTCCATTGATGTCGAACCCTACTGGGATCGGGCACGTAAATTAGTGGACAACAGGTACAGCACCATTGATTTTCCGTTTGAGCCGGTTAGGGGAGAAGGCAGTACAGGACCGTTTGAGTTTGTGACGGAGAGATTGATGGATTTGGATGATTTTTTCACGTACATAAGGTCGTGGTCAGCATATCAGACGGCTAAGGACAAGGGTATTGAGCTTCTGAGTGACGATGTGATGGAGGAATTTAAGCAAGCTTGGAATGCTGGTGGCGGAGATGAACAGAAGGCTGTGAACTATCCTGTCTATTTAAGAGTCGGAAGAGTCGGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

264

Amino Acids

30.01

Weight (kDa)

5.49

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 129	3.4e-10	Methyltransferase domain
Methyltransf_25	PF13649	39 - 129	9.7e-08	Methyltransferase domain
Methyltransf_12	PF08242	39 - 128	1.9e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41380
fragaria_vesca	FvH4_3g01760 FvH4_3g01780
malus_domestica	MD14G1084000.v1.1
prunus_persica	Prupe.7G045000_v2.0.a1
pyrus_communis	pycom14g07380 pycom14g07470
rosa_chinensis	RchiOBHm_Chr5g0002601 RchiOBHm_Chr5g0063371 RchiOBHm_Chr6g0309701
rosa_laevigata	RLG00000031046 RLG00000035630
rosa_multiflora	Rmu_sc0006795.1_g000004 Rmu_sc0009084.1_g000008 Rmu_sc0011295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017330 Rroxscaffold_1G00073250
rosa_rugosa	Rorug04G0397600 Rorug04G0397600 Rorug05G0356800 Rorug05G0356900
rosa_samantha	Rh5AG021100 Rh5AG416200 Rh5BG023800 Rh5CG023200 Rh5CG454600 Rh5DG022200 Rh5DG444800 Rh6AG487400
rosa_wichuraiana	Rw5G001950 Rw5G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	3 cut(s)	5, 96, 732
AclWI	GGATC	3 cut(s)	15, 141, 501
AcoI	YGGCCR	2 cut(s)	47, 133
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	2 cut(s)	56, 401
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	5 cut(s)	35, 301, 524, 571, 629
AfiI	CCNNNNNNNGG	3 cut(s)	112, 336, 557
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	206, 275
AjnI	CCWGG	2 cut(s)	49, 135
AluBI	AGCT	4 cut(s)	67, 155, 679, 716
AluI	AGCT	4 cut(s)	67, 155, 679, 716
Alw21I	GWGCWC	1 cut(s)	243
AlwI	GGATC	3 cut(s)	15, 141, 501
AoxI	GGCC	3 cut(s)	47, 133, 285
ApeKI	GCWGC	4 cut(s)	67, 92, 140, 404
ApoI	RAATTY	1 cut(s)	704
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AsiGI	ACCGGT	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	253, 575
AvaII	GGWCC	2 cut(s)	253, 575
BaeGI	GKGCMC	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	4 cut(s)	54, 79, 127, 391
BccI	CCATC	2 cut(s)	598, 691
BceAI	ACGGC	1 cut(s)	672
BciT130I	CCWGG	2 cut(s)	51, 137
BfaI	CTAG	3 cut(s)	152, 297, 426
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	5 cut(s)	68, 93, 96, 141, 405
BlsI	GCNGC	5 cut(s)	69, 94, 97, 142, 406
BmcAI	AGTACT	1 cut(s)	301
Bme1390I	CCNGG	2 cut(s)	51, 137
Bme18I	GGWCC	2 cut(s)	253, 575
BmgT120I	GGNCC	2 cut(s)	253, 575
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	51, 137
BmrI	ACTGGG	1 cut(s)	499
BmuI	ACTGGG	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	445
Bpu10I	CCTNAGC	1 cut(s)	660
BsaAI	YACGTR	2 cut(s)	503, 627
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	87, 391
BsaWI	WCCGGW	2 cut(s)	125, 250
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 336, 557
Bse118I	RCCGGY	2 cut(s)	125, 550
Bse1I	ACTGG	1 cut(s)	494
Bse3DI	GCAATG	3 cut(s)	78, 318, 399
BseBI	CCWGG	2 cut(s)	51, 137
BseDI	CCNNGG	2 cut(s)	87, 391
BseGI	GGATG	1 cut(s)	619
BseLI	CCNNNNNNNGG	3 cut(s)	112, 336, 557
BseMI	GCAATG	3 cut(s)	78, 318, 399
BseMII	CTCAG	3 cut(s)	72, 147, 674
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	4 cut(s)	54, 79, 127, 391
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	3 cut(s)	49, 135, 287
BshNI	GGYRCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	3 cut(s)	126, 251, 551
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	3 cut(s)	112, 336, 557
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	2 cut(s)	212, 727
BsnI	GGCC	3 cut(s)	49, 135, 287
Bsp1286I	GDGCHC	2 cut(s)	243, 502
Bsp143I	GATC	5 cut(s)	7, 146, 159, 457, 493
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	3 cut(s)	5, 96, 732
BspANI	GGCC	3 cut(s)	49, 135, 287
BspCNI	CTCAG	3 cut(s)	71, 148, 675
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	3 cut(s)	15, 141, 501
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	3 cut(s)	78, 318, 399
BsrFI	RCCGGY	2 cut(s)	125, 550
BsrI	ACTGG	1 cut(s)	494
BssAI	RCCGGY	2 cut(s)	125, 550
BssECI	CCNNGG	2 cut(s)	87, 391
BssMI	GATC	5 cut(s)	7, 146, 159, 457, 493
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	87, 391
Bst2UI	CCWGG	2 cut(s)	51, 137
Bst4CI	ACNGT	4 cut(s)	304, 421, 451, 579
Bst6I	CTCTTC	1 cut(s)	775
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	2 cut(s)	503, 627
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	4 cut(s)	58, 156, 660, 683
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	619
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	5 cut(s)	10, 149, 162, 460, 496
BstMBI	GATC	5 cut(s)	7, 146, 159, 457, 493
BstMCI	CGRYCG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 722
BstNI	CCWGG	2 cut(s)	51, 137
BstSCI	CCNGG	2 cut(s)	49, 135
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	4 cut(s)	54, 79, 127, 391
BstV2I	GAAGAC	1 cut(s)	445
BstX2I	RGATCY	2 cut(s)	7, 159
BstYI	RGATCY	2 cut(s)	7, 159
BsuRI	GGCC	3 cut(s)	49, 135, 287
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	619
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	714
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	2 cut(s)	125, 550
Cfr13I	GGNCC	2 cut(s)	253, 575
Csp6I	GTAC	5 cut(s)	34, 300, 523, 570, 628
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	3 cut(s)	111, 392, 408
CviQI	GTAC	5 cut(s)	34, 300, 523, 570, 628
DdeI	CTNAG	4 cut(s)	58, 156, 660, 683
DpnI	GATC	5 cut(s)	9, 148, 161, 459, 495
DpnII	GATC	5 cut(s)	7, 146, 159, 457, 493
EaeI	YGGCCR	2 cut(s)	47, 133
Eam1104I	CTCTTC	1 cut(s)	775
EarI	CTCTTC	1 cut(s)	775
EciI	GGCGGA	2 cut(s)	20, 747
Eco130I	CCWWGG	2 cut(s)	87, 391
Eco47I	GGWCC	2 cut(s)	253, 575
Eco57I	CTGAAG	2 cut(s)	56, 401
EcoRII	CCWGG	2 cut(s)	49, 135
EcoT14I	CCWWGG	2 cut(s)	87, 391
ErhI	CCWWGG	2 cut(s)	87, 391
FaeI	CATG	3 cut(s)	114, 395, 411
FaiI	YATR	7 cut(s)	112, 168, 237, 393, 409, 632, 649
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	110, 391, 407
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	5 cut(s)	68, 93, 96, 141, 405
FokI	GGATG	1 cut(s)	626
Fsp4HI	GCNGC	5 cut(s)	68, 93, 96, 141, 405
FspBI	CTAG	3 cut(s)	152, 297, 426
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	5 cut(s)	68, 93, 96, 141, 405
HaeIII	GGCC	3 cut(s)	49, 135, 287
HapII	CCGG	3 cut(s)	126, 251, 551
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	114, 395, 411
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	2 cut(s)	774, 783
HpaI	GTTAAC	1 cut(s)	433
HpaII	CCGG	3 cut(s)	126, 251, 551
Hpy166II	GTNNAC	4 cut(s)	433, 445, 514, 754
Hpy188I	TCNGA	4 cut(s)	61, 654, 684, 779
Hpy188III	TCNNGA	2 cut(s)	256, 787
Hpy8I	GTNNAC	4 cut(s)	433, 445, 514, 754
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	557, 739
HpyCH4III	ACNGT	4 cut(s)	304, 421, 451, 579
HpyCH4IV	ACGT	3 cut(s)	117, 502, 626
HpyCH4V	TGCA	4 cut(s)	110, 323, 334, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 722
HpyF3I	CTNAG	4 cut(s)	58, 156, 660, 683
HpySE526I	ACGT	3 cut(s)	117, 502, 626
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	114, 395, 411
HspAI	GCGC	1 cut(s)	210
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	7, 146, 159, 457, 493
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	4 cut(s)	54, 79, 127, 391
MaeI	CTAG	3 cut(s)	152, 297, 426
MaeII	ACGT	3 cut(s)	117, 502, 626
MaeIII	GTNAC	4 cut(s)	53, 313, 589, 686
MalI	GATC	5 cut(s)	9, 148, 161, 459, 495
MboI	GATC	5 cut(s)	7, 146, 159, 457, 493
MboII	GAAGA	4 cut(s)	154, 394, 445, 792
MflI	RGATCY	2 cut(s)	7, 159
MhlI	GDGCHC	2 cut(s)	243, 502
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	5 cut(s)	270, 281, 506, 704, 790
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	783, 792
MmeI	TCCRAC	1 cut(s)	757
MnlI	CCTC	4 cut(s)	258, 298, 356, 694
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	3 cut(s)	432, 708, 770
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	3 cut(s)	126, 251, 551
MspR9I	CCNGG	2 cut(s)	51, 137
Mva1269I	GAATGC	2 cut(s)	212, 727
MvaI	CCWGG	2 cut(s)	51, 137
MwoI	GCNNNNNNNGC	2 cut(s)	89, 722
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	5 cut(s)	7, 146, 159, 457, 493
NlaIII	CATG	3 cut(s)	114, 395, 411
NlaIV	GGNNCC	1 cut(s)	124
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	3 cut(s)	313, 589, 686
PctI	GAATGC	2 cut(s)	212, 727
PflFI	GACNNNGTC	1 cut(s)	449
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	5 cut(s)	69, 94, 97, 142, 406
Ple19I	CGATCG	1 cut(s)	460
PleI	GAGTC	2 cut(s)	782, 791
PpsI	GAGTC	2 cut(s)	782, 791
Ppu21I	YACGTR	2 cut(s)	503, 627
Psp6I	CCWGG	2 cut(s)	49, 135
PspGI	CCWGG	2 cut(s)	49, 135
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	253, 575
PsuI	RGATCY	2 cut(s)	7, 159
PsyI	GACNNNGTC	1 cut(s)	449
PvuI	CGATCG	1 cut(s)	460
RsaI	GTAC	5 cut(s)	35, 301, 524, 571, 629
RsaNI	GTAC	5 cut(s)	34, 300, 523, 570, 628
SaqAI	TTAA	3 cut(s)	432, 708, 770
SatI	GCNGC	5 cut(s)	68, 93, 96, 141, 405
Sau3AI	GATC	5 cut(s)	7, 146, 159, 457, 493
Sau96I	GGNCC	2 cut(s)	253, 575
ScaI	AGTACT	1 cut(s)	301
SchI	GAGTC	2 cut(s)	783, 792
ScrFI	CCNGG	2 cut(s)	51, 137
SduI	GDGCHC	2 cut(s)	243, 502
SinI	GGWCC	2 cut(s)	253, 575
Sse9I	AATT	5 cut(s)	270, 281, 506, 704, 790
SsiI	CCGC	3 cut(s)	5, 96, 732
SspMI	CTAG	3 cut(s)	152, 297, 426
StyD4I	CCNGG	2 cut(s)	49, 135
StyI	CCWWGG	2 cut(s)	87, 391
TaaI	ACNGT	4 cut(s)	304, 421, 451, 579
TaiI	ACGT	3 cut(s)	120, 505, 629
TaqI	TCGA	2 cut(s)	456, 480
TasI	AATT	5 cut(s)	270, 281, 506, 704, 790
TatI	WGTACW	2 cut(s)	299, 569
TauI	GCSGC	1 cut(s)	98
Tru1I	TTAA	3 cut(s)	432, 708, 770
Tru9I	TTAA	3 cut(s)	432, 708, 770
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	3 cut(s)	313, 589, 686
TseI	GCWGC	4 cut(s)	67, 92, 140, 404
Tsp45I	GTSAC	3 cut(s)	313, 589, 686
TspDTI	ATGAA	3 cut(s)	4, 67, 753
TspGWI	ACGGA	2 cut(s)	531, 608
TspRI	CASTG	1 cut(s)	424
Tth111I	GACNNNGTC	1 cut(s)	449
VpaK11BI	GGWCC	2 cut(s)	253, 575
XapI	RAATTY	1 cut(s)	704
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	3 cut(s)	152, 297, 426
ZraI	GACGTC	1 cut(s)	118
ZrmI	AGTACT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.