Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004800

Physical Location & Seq

Genomic Coordinates Reverse (-)

8119047 .. 8120748

Gene Structure 1702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G045000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCAGATCTGTTCATCAAACAATCAAAGCAATATGCTAAGGCTCGGCCAGATTACCCAGAAGAGCTCTTTGATTACGTTGCCTCCAAGACCAATTGCCACGACCTCGCATGGGACGTCGGCACCGGTAACGGCCAGGCTGCCGGATCCCTAGCTGGGATCTACAAGAATGTCATAGCCACAGATACAAGCCAAAAACAACTTGAGTTTGCAATCAAGCTGCCCAACATTCGCTATGAGCATACCCCTGCAGTTATGTCTATAGCTGAGGTTGAACAAAAATTGGCACCAAAATCAAGCATAGATTTGGTGATCGTTGCTCAGGCTCTACATTGGTTTGACCTCCCTACTTTCTACCAAGGCGTGAATTGGGTGCTGAAAAAACCCAATGGTGTCATTGCTGCATGGTGCTATACAGTTCCTCGGGTTAACAACGCCGTAGACACCGTCTTTGATCGATTCTATACCGTTGATGTCGACCCTTATTGGGATCCACAGCGTAAATTGGTGGACAACAAGTACAGAAGCATCGATTTTCCGTTTGCGCCAGTGGATGGAGAAGAGAACACAGGACCCTTTGAGTTTGTGACAGAGAGGTTGATGGACTTGGATGGTTTTTTCACGTACATAAGGTCATGGTCTGCATATCAGACAGCAAAGGAGAAGGGTGTTGAGCTTTTGAGTGATGATGTGATTGCGGCATTTAGGGAAGCTTGGAATGATGGTGGAGATGGCAATAAGGCTGTGAAGTTTCCTGTCAATTTGAGGATTGGAAGAGTGGGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

263

Amino Acids

29.58

Weight (kDa)

5.08

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41380
fragaria_vesca	FvH4_3g01760 FvH4_3g01780
malus_domestica	MD14G1084000.v1.1
prunus_persica	Prupe.7G045000_v2.0.a1
pyrus_communis	pycom14g07380 pycom14g07470
rosa_chinensis	RchiOBHm_Chr5g0002601 RchiOBHm_Chr5g0063371 RchiOBHm_Chr6g0309701
rosa_laevigata	RLG00000031046 RLG00000035630
rosa_multiflora	Rmu_sc0006795.1_g000004 Rmu_sc0009084.1_g000008 Rmu_sc0011295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017330 Rroxscaffold_1G00073250
rosa_rugosa	Rorug04G0397600 Rorug04G0397600 Rorug05G0356800 Rorug05G0356900
rosa_samantha	Rh5AG021100 Rh5AG416200 Rh5BG023800 Rh5CG023200 Rh5CG454600 Rh5DG022200 Rh5DG444800 Rh6AG487400
rosa_wichuraiana	Rw5G001950 Rw5G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccB1I	GGYRCC	2 cut(s)	122, 286
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccI	GTMKAC	2 cut(s)	441, 477
AciI	CCGC	1 cut(s)	698
AclWI	GGATC	5 cut(s)	141, 154, 167, 485, 498
AcoI	YGGCCR	2 cut(s)	47, 133
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	2 cut(s)	521, 626
AfiI	CCNNNNNNNGG	4 cut(s)	112, 156, 487, 554
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	6 cut(s)	67, 155, 220, 266, 676, 713
AluI	AGCT	6 cut(s)	67, 155, 220, 266, 676, 713
Alw21I	GWGCWC	1 cut(s)	69
AlwI	GGATC	5 cut(s)	141, 154, 167, 485, 498
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	2 cut(s)	47, 133
ApeKI	GCWGC	3 cut(s)	140, 220, 401
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AsiGI	ACCGGT	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	547
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	1 cut(s)	322
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	572
BamHI	GGATCC	2 cut(s)	146, 490
BanI	GGYRCC	2 cut(s)	122, 286
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	127, 207, 388
BccI	CCATC	5 cut(s)	548, 595, 605, 716, 725
BceAI	ACGGC	2 cut(s)	148, 422
BciT130I	CCWGG	1 cut(s)	137
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	2 cut(s)	249, 261
BglII	AGATCT	1 cut(s)	7
BisI	GCNGC	4 cut(s)	141, 221, 402, 699
BlsI	GCNGC	4 cut(s)	142, 222, 403, 700
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	572
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	5 cut(s)	124, 148, 288, 492, 574
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	537
Bpu10I	CCTNAGC	3 cut(s)	39, 267, 321
BpuEI	CTTGAG	1 cut(s)	224
Bsa29I	ATCGAT	2 cut(s)	457, 531
BsaAI	YACGTR	1 cut(s)	624
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	358, 422
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 156, 487, 554
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	548
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	137
BseCI	ATCGAT	2 cut(s)	457, 531
BseDI	CCNNGG	2 cut(s)	358, 422
BseGI	GGATG	2 cut(s)	559, 616
BseLI	CCNNNNNNNGG	4 cut(s)	112, 156, 487, 554
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	258, 335
BseNI	ACTGG	1 cut(s)	548
BseXI	GCAGC	3 cut(s)	127, 207, 388
BseYI	CCCAGC	1 cut(s)	155
BshFI	GGCC	2 cut(s)	49, 135
BshNI	GGYRCC	2 cut(s)	122, 286
BshTI	ACCGGT	1 cut(s)	125
BshVI	ATCGAT	2 cut(s)	457, 531
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	2 cut(s)	126, 144
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	4 cut(s)	112, 156, 487, 554
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	2 cut(s)	49, 135
BsoBI	CYCGRG	1 cut(s)	423
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	6 cut(s)	7, 146, 159, 312, 454, 490
BspACI	CCGC	1 cut(s)	698
BspANI	GGCC	2 cut(s)	49, 135
BspCNI	CTCAG	2 cut(s)	259, 334
BspDI	ATCGAT	2 cut(s)	457, 531
BspLI	GGNNCC	5 cut(s)	124, 148, 288, 492, 574
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	5 cut(s)	141, 154, 167, 485, 498
BspQI	GCTCTTC	1 cut(s)	57
BspT107I	GGYRCC	2 cut(s)	122, 286
BsrDI	GCAATG	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	548
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	358, 422
BssMI	GATC	6 cut(s)	7, 146, 159, 312, 454, 490
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	3 cut(s)	418, 448, 469
Bst6I	CTCTTC	3 cut(s)	57, 555, 769
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	624
BstDEI	CTNAG	3 cut(s)	39, 267, 321
BstF5I	GGATG	2 cut(s)	559, 616
BstHHI	GCGC	1 cut(s)	547
BstKTI	GATC	6 cut(s)	10, 149, 162, 315, 457, 493
BstMBI	GATC	6 cut(s)	7, 146, 159, 312, 454, 490
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	2 cut(s)	249, 261
BstV1I	GCAGC	3 cut(s)	127, 207, 388
BstX2I	RGATCY	4 cut(s)	7, 146, 159, 490
BstYI	RGATCY	4 cut(s)	7, 146, 159, 490
Bsu15I	ATCGAT	2 cut(s)	457, 531
BsuRI	GGCC	2 cut(s)	49, 135
BsuTUI	ATCGAT	2 cut(s)	457, 531
BtsCI	GGATG	2 cut(s)	559, 616
BtsIMutI	CAGTG	1 cut(s)	555
CfoI	GCGC	1 cut(s)	547
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	572
ClaI	ATCGAT	2 cut(s)	457, 531
Csp6I	GTAC	2 cut(s)	520, 625
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	3 cut(s)	111, 405, 636
CviQI	GTAC	2 cut(s)	520, 625
DdeI	CTNAG	3 cut(s)	39, 267, 321
DpnI	GATC	6 cut(s)	9, 148, 161, 314, 456, 492
DpnII	GATC	6 cut(s)	7, 146, 159, 312, 454, 490
EaeI	YGGCCR	2 cut(s)	47, 133
Eam1104I	CTCTTC	3 cut(s)	57, 555, 769
EarI	CTCTTC	3 cut(s)	57, 555, 769
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	572
Eco53kI	GAGCTC	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	423
EcoICRI	GAGCTC	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	3 cut(s)	114, 408, 639
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	110, 404, 635
FblI	GTMKAC	2 cut(s)	441, 477
Fnu4HI	GCNGC	4 cut(s)	141, 221, 402, 699
FokI	GGATG	2 cut(s)	566, 623
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	4 cut(s)	141, 221, 402, 699
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	546
GluI	GCNGC	4 cut(s)	141, 221, 402, 699
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	49, 135
HapII	CCGG	2 cut(s)	126, 144
HhaI	GCGC	1 cut(s)	547
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	114, 408, 639
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HincII	GTYRAC	2 cut(s)	430, 478
HindII	GTYRAC	2 cut(s)	430, 478
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	1 cut(s)	459
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	2 cut(s)	126, 144
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	4 cut(s)	430, 442, 478, 511
Hpy188I	TCNGA	1 cut(s)	651
Hpy8I	GTNNAC	4 cut(s)	430, 442, 478, 511
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	658
HpyCH4III	ACNGT	3 cut(s)	418, 448, 469
HpyCH4IV	ACGT	3 cut(s)	78, 117, 623
HpyCH4V	TGCA	4 cut(s)	212, 251, 404, 644
HpyF3I	CTNAG	3 cut(s)	39, 267, 321
HpySE526I	ACGT	3 cut(s)	78, 117, 623
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	114, 408, 639
HspAI	GCGC	1 cut(s)	545
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	6 cut(s)	7, 146, 159, 312, 454, 490
LguI	GCTCTTC	1 cut(s)	57
Lsp1109I	GCAGC	3 cut(s)	127, 207, 388
LweI	GCATC	1 cut(s)	537
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	3 cut(s)	78, 117, 623
MaeIII	GTNAC	2 cut(s)	128, 586
MalI	GATC	6 cut(s)	9, 148, 161, 314, 456, 492
MboI	GATC	6 cut(s)	7, 146, 159, 312, 454, 490
MboII	GAAGA	3 cut(s)	74, 572, 786
MfeI	CAATTG	1 cut(s)	94
MflI	RGATCY	4 cut(s)	7, 146, 159, 490
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	6 cut(s)	94, 281, 367, 503, 760, 784
MnlI	CCTC	7 cut(s)	94, 116, 262, 353, 432, 588, 759
MseI	TTAA	2 cut(s)	429, 787
MspI	CCGG	2 cut(s)	126, 144
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	137
NdeII	GATC	6 cut(s)	7, 146, 159, 312, 454, 490
NlaIII	CATG	3 cut(s)	114, 408, 639
NlaIV	GGNNCC	5 cut(s)	124, 148, 288, 492, 574
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	586
PciSI	GCTCTTC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	459
PflFI	GACNNNGTC	1 cut(s)	446
PflMI	CCANNNNNTGG	1 cut(s)	554
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	4 cut(s)	142, 222, 403, 700
Ppu21I	YACGTR	1 cut(s)	624
PpuMI	RGGWCCY	1 cut(s)	572
Psp124BI	GAGCTC	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	5 cut(s)	124, 148, 288, 492, 574
PspPI	GGNCC	1 cut(s)	572
PspPPI	RGGWCCY	1 cut(s)	572
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	4 cut(s)	7, 146, 159, 490
PsyI	GACNNNGTC	1 cut(s)	446
RsaI	GTAC	2 cut(s)	521, 626
RsaNI	GTAC	2 cut(s)	520, 625
SacI	GAGCTC	1 cut(s)	69
SalI	GTCGAC	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	429, 787
SatI	GCNGC	4 cut(s)	141, 221, 402, 699
Sau3AI	GATC	6 cut(s)	7, 146, 159, 312, 454, 490
Sau96I	GGNCC	1 cut(s)	572
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	1 cut(s)	537
SfcI	CTRYAG	2 cut(s)	249, 261
SinI	GGWCC	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	6 cut(s)	94, 281, 367, 503, 760, 784
SsiI	CCGC	1 cut(s)	698
SspMI	CTAG	1 cut(s)	152
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	3 cut(s)	418, 448, 469
TaiI	ACGT	3 cut(s)	81, 120, 626
TaqI	TCGA	3 cut(s)	457, 477, 531
TasI	AATT	6 cut(s)	94, 281, 367, 503, 760, 784
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	1 cut(s)	459
Tru1I	TTAA	2 cut(s)	429, 787
Tru9I	TTAA	2 cut(s)	429, 787
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	3 cut(s)	140, 220, 401
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	1 cut(s)	4
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	1 cut(s)	555
Tth111I	GACNNNGTC	1 cut(s)	446
Van91I	CCANNNNNTGG	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	572
XmiI	GTMKAC	2 cut(s)	441, 477
XspI	CTAG	1 cut(s)	152
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.