Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004800

Physical Location & Seq

Genomic Coordinates Reverse (-)

10195517 .. 10197263

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1084000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCGGAGCTGTTCATAAAACAATCAAAGCAATATGCCGAGACTCGGCCATGCTACCCCGAAGAGCTGTTTGAATACATTGCCTCCAAGACCCCTTGTCACGACCTCGCATGGGATGTCGGCACCGGCAGTGGCCAGGCTGCCCGATCCCTAGCCGGGATCTTCAAGAATGTGATAGCCACAGATACAAGCCAAAAACAACTCGAGTTGGCACCCAAGCTGCCCAATATTAGCTACGAACACACCCCTCCTGTCATGTCAATAGCCGAGGTTGAACAAAAGTTGACACCAAAATCAAGTGTTGATCTGGTGATCGTTGCTCAGGCCCTCCATTGGTTTGACCTCCCCAATTTCTATCAACAAGTGAAACATGTACTGAAGAAACCTAATGGTGTCCTTGCAGCATGGTGCTATACAGTGCCTAGGGTTAACAGCATTGTAGACACCGTCTTTGATCGTTTTTACACCGTTGATTCTGATCCTTACTGGGATCCAGCACGTAAATTGGTTGACGACAAGTATAAGAGTATCGAATTTCCATTTGAGCCGGTGGACGGAGAAGAGAACACAGGACCATTTGAGTTCGTGACAGAGCAGTTAATGGATTTGGATGGCTTTTTTACATACATAAGGTCATGGTCTGCATATCAGACGGCAAAAGAAAAGGGTGTTGAGCTCTTGAGTAGTCATATGATCGAGGCATTTAAGCAAACTTGGAATGAAGGTGGAGATCATGGTCAGAAGGTTGTCAAGTTTCCAGTCAATTTAAGAATTGGAAAAGTGGAGAAGCAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

266

Amino Acids

30.26

Weight (kDa)

5.33

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 134	2.6e-11	Methyltransferase domain
Methyltransf_25	PF13649	39 - 128	8.3e-09	Methyltransferase domain
Methyltransf_12	PF08242	39 - 133	1.4e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41380
fragaria_vesca	FvH4_3g01760 FvH4_3g01780
malus_domestica	MD14G1084000.v1.1
prunus_persica	Prupe.7G045000_v2.0.a1
pyrus_communis	pycom14g07380 pycom14g07470
rosa_chinensis	RchiOBHm_Chr5g0002601 RchiOBHm_Chr5g0063371 RchiOBHm_Chr6g0309701
rosa_laevigata	RLG00000031046 RLG00000035630
rosa_multiflora	Rmu_sc0006795.1_g000004 Rmu_sc0009084.1_g000008 Rmu_sc0011295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017330 Rroxscaffold_1G00073250
rosa_rugosa	Rorug04G0397600 Rorug04G0397600 Rorug05G0356800 Rorug05G0356900
rosa_samantha	Rh5AG021100 Rh5AG416200 Rh5BG023800 Rh5CG023200 Rh5CG454600 Rh5DG022200 Rh5DG444800 Rh6AG487400
rosa_wichuraiana	Rw5G001950 Rw5G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	122, 211
AccI	GTMKAC	1 cut(s)	441
AclWI	GGATC	5 cut(s)	141, 167, 473, 485, 498
AcoI	YGGCCR	2 cut(s)	47, 133
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	5 cut(s)	45, 112, 156, 333, 554
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	3 cut(s)	74, 166, 275
AhdI	GACNNNNNGTC	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	5 cut(s)	10, 67, 220, 234, 676
AluI	AGCT	5 cut(s)	10, 67, 220, 234, 676
Alw21I	GWGCWC	1 cut(s)	678
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	5 cut(s)	141, 167, 473, 485, 498
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	3 cut(s)	47, 133, 324
ApeKI	GCWGC	3 cut(s)	140, 220, 401
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AspA2I	CCTAGG	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	325, 572
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	322
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	572
AvrII	CCTAGG	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	135
BamHI	GGATCC	1 cut(s)	490
BanI	GGYRCC	2 cut(s)	122, 211
BanII	GRGCYC	1 cut(s)	678
Bbv12I	GWGCWC	1 cut(s)	678
BbvI	GCAGC	3 cut(s)	127, 207, 413
BccI	CCATC	1 cut(s)	605
BceAI	ACGGC	1 cut(s)	669
BciT130I	CCWGG	1 cut(s)	137
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	152, 423
BisI	GCNGC	3 cut(s)	141, 221, 402
BlnI	CCTAGG	1 cut(s)	422
BlsI	GCNGC	3 cut(s)	142, 222, 403
Bme1390I	CCNGG	2 cut(s)	137, 157
Bme18I	GGWCC	1 cut(s)	572
BmeRI	GACNNNNNGTC	1 cut(s)	96
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	325, 572
BmiI	GGNNCC	3 cut(s)	124, 213, 492
BmrFI	CCNGG	2 cut(s)	137, 157
BmrI	ACTGGG	1 cut(s)	496
BmuI	ACTGGG	1 cut(s)	496
Bpu10I	CCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	700
BpuMI	CCSGG	1 cut(s)	157
BsaAI	YACGTR	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	267, 422
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 112, 156, 333, 554
Bse118I	RCCGGY	2 cut(s)	125, 547
Bse1I	ACTGG	2 cut(s)	491, 758
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	267, 422
BseGI	GGATG	2 cut(s)	121, 616
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	5 cut(s)	45, 112, 156, 333, 554
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	2 cut(s)	491, 758
BseXI	GCAGC	3 cut(s)	127, 207, 413
BshFI	GGCC	3 cut(s)	49, 135, 326
BshNI	GGYRCC	2 cut(s)	122, 211
BsiHKAI	GWGCWC	1 cut(s)	678
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	3 cut(s)	126, 156, 548
BslI	CCNNNNNNNGG	5 cut(s)	45, 112, 156, 333, 554
BsmAI	GTCTC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	49, 135, 326
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	9 cut(s)	146, 159, 304, 312, 454, 478, 490, 693, 730
BspANI	GGCC	3 cut(s)	49, 135, 326
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	124, 213, 492
BspPI	GGATC	5 cut(s)	141, 167, 473, 485, 498
BspQI	GCTCTTC	1 cut(s)	57
BspT107I	GGYRCC	2 cut(s)	122, 211
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	2 cut(s)	125, 547
BsrI	ACTGG	2 cut(s)	491, 758
BssAI	RCCGGY	2 cut(s)	125, 547
BssECI	CCNNGG	2 cut(s)	267, 422
BssMI	GATC	9 cut(s)	146, 159, 304, 312, 454, 478, 490, 693, 730
BssT1I	CCWWGG	1 cut(s)	422
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	3 cut(s)	418, 448, 469
Bst6I	CTCTTC	2 cut(s)	57, 555
BstBAI	YACGTR	1 cut(s)	500
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	2 cut(s)	121, 616
BstKTI	GATC	9 cut(s)	149, 162, 307, 315, 457, 481, 493, 696, 733
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	9 cut(s)	146, 159, 304, 312, 454, 478, 490, 693, 730
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	135, 155
BstV1I	GCAGC	3 cut(s)	127, 207, 413
BstX2I	RGATCY	2 cut(s)	159, 490
BstYI	RGATCY	2 cut(s)	159, 490
BsuRI	GGCC	3 cut(s)	49, 135, 326
BtsCI	GGATG	2 cut(s)	121, 616
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 423
Cfr10I	RCCGGY	2 cut(s)	125, 547
Cfr13I	GGNCC	2 cut(s)	325, 572
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	7 cut(s)	51, 111, 256, 371, 405, 636, 734
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	9 cut(s)	148, 161, 306, 314, 456, 480, 492, 695, 732
DpnII	GATC	9 cut(s)	146, 159, 304, 312, 454, 478, 490, 693, 730
DriI	GACNNNNNGTC	1 cut(s)	96
EaeI	YGGCCR	2 cut(s)	47, 133
Eam1104I	CTCTTC	2 cut(s)	57, 555
Eam1105I	GACNNNNNGTC	1 cut(s)	96
EarI	CTCTTC	2 cut(s)	57, 555
Ecl136II	GAGCTC	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	572
Eco53kI	GAGCTC	1 cut(s)	676
Eco57I	CTGAAG	1 cut(s)	398
Eco88I	CYCGRG	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	676
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	7 cut(s)	54, 114, 259, 374, 408, 639, 737
FatI	CATG	7 cut(s)	50, 110, 255, 370, 404, 635, 733
FauNDI	CATATG	1 cut(s)	690
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	141, 221, 402
FokI	GGATG	2 cut(s)	128, 623
FriOI	GRGCYC	1 cut(s)	678
Fsp4HI	GCNGC	3 cut(s)	141, 221, 402
FspBI	CTAG	2 cut(s)	152, 423
GluI	GCNGC	3 cut(s)	141, 221, 402
HaeIII	GGCC	3 cut(s)	49, 135, 326
HapII	CCGG	3 cut(s)	126, 156, 548
Hin1II	CATG	7 cut(s)	54, 114, 259, 374, 408, 639, 737
HincII	GTYRAC	3 cut(s)	285, 430, 511
HindII	GTYRAC	3 cut(s)	285, 430, 511
HinfI	GANTC	2 cut(s)	43, 473
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	3 cut(s)	126, 156, 548
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	5 cut(s)	285, 430, 442, 511, 553
Hpy188I	TCNGA	4 cut(s)	7, 478, 651, 741
Hpy188III	TCNNGA	4 cut(s)	101, 166, 586, 679
Hpy8I	GTNNAC	5 cut(s)	285, 430, 442, 511, 553
HpyAV	CCTTC	2 cut(s)	716, 736
HpyCH4III	ACNGT	3 cut(s)	418, 448, 469
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	2 cut(s)	401, 644
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	7 cut(s)	54, 114, 259, 374, 408, 639, 737
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	9 cut(s)	146, 159, 304, 312, 454, 478, 490, 693, 730
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	3 cut(s)	127, 207, 413
MaeI	CTAG	2 cut(s)	152, 423
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	2 cut(s)	98, 586
MalI	GATC	9 cut(s)	148, 161, 306, 314, 456, 480, 492, 695, 732
MboI	GATC	9 cut(s)	146, 159, 304, 312, 454, 478, 490, 693, 730
MboII	GAAGA	4 cut(s)	74, 154, 391, 572
MflI	RGATCY	2 cut(s)	159, 490
MhlI	GDGCHC	1 cut(s)	678
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	5 cut(s)	349, 503, 533, 763, 771
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	7 cut(s)	94, 116, 258, 262, 338, 353, 691
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	5 cut(s)	429, 599, 705, 767, 796
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	3 cut(s)	126, 156, 548
MspR9I	CCNGG	2 cut(s)	137, 157
MvaI	CCWGG	1 cut(s)	137
NciI	CCSGG	1 cut(s)	157
NdeI	CATATG	1 cut(s)	690
NdeII	GATC	9 cut(s)	146, 159, 304, 312, 454, 478, 490, 693, 730
NlaIII	CATG	7 cut(s)	54, 114, 259, 374, 408, 639, 737
NlaIV	GGNNCC	3 cut(s)	124, 213, 492
NmeAIII	GCCGAG	3 cut(s)	25, 64, 292
NmuCI	GTSAC	2 cut(s)	98, 586
NspI	RCATGY	1 cut(s)	374
PaeR7I	CTCGAG	1 cut(s)	203
PciI	ACATGT	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	473
PflFI	GACNNNGTC	1 cut(s)	446
PkrI	GCNGC	3 cut(s)	142, 222, 403
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Ppu21I	YACGTR	1 cut(s)	500
PscI	ACATGT	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	678
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	3 cut(s)	124, 213, 492
PspPI	GGNCC	2 cut(s)	325, 572
PspXI	VCTCGAGB	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	159, 490
PsyI	GACNNNGTC	1 cut(s)	446
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	678
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	5 cut(s)	429, 599, 705, 767, 796
SatI	GCNGC	3 cut(s)	141, 221, 402
Sau3AI	GATC	9 cut(s)	146, 159, 304, 312, 454, 478, 490, 693, 730
Sau96I	GGNCC	2 cut(s)	325, 572
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	137, 157
SduI	GDGCHC	1 cut(s)	678
Sfr274I	CTCGAG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	572
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	2 cut(s)	203, 679
SmoI	CTYRAG	2 cut(s)	203, 679
Sse9I	AATT	5 cut(s)	349, 503, 533, 763, 771
SspI	AATATT	2 cut(s)	229, 794
SspMI	CTAG	2 cut(s)	152, 423
SstI	GAGCTC	1 cut(s)	678
StyD4I	CCNGG	2 cut(s)	135, 155
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	3 cut(s)	418, 448, 469
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	3 cut(s)	204, 531, 696
TasI	AATT	5 cut(s)	349, 503, 533, 763, 771
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	5 cut(s)	429, 599, 705, 767, 796
Tru9I	TTAA	5 cut(s)	429, 599, 705, 767, 796
TscAI	CASTG	2 cut(s)	136, 423
TseFI	GTSAC	2 cut(s)	98, 586
TseI	GCWGC	3 cut(s)	140, 220, 401
Tsp45I	GTSAC	2 cut(s)	98, 586
TspDTI	ATGAA	2 cut(s)	4, 735
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	2 cut(s)	136, 423
Tth111I	GACNNNGTC	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	203
XmaJI	CCTAGG	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	2 cut(s)	152, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.