Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004800

Physical Location & Seq

Genomic Coordinates Reverse (-)

63279743 .. 63280675

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG454600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGCAATTTGCTGTCCAAATTGCATAACGATAGGGAACTAGCTGAGATCTTCTATAATGTGGTGGCAACAGACACAAGCCAAAAGCAACTTGAATGCGCTCCAAAACTCCCCAATGTTCGCTATGAGCACACTCCTCCTGTCCTGACCATACCTGAAATTGAACGAAAATTGGCCTCAAAATCTAGTGTTGATTTAGTGACCATTGCACAAGCCCTGCATTGGTTTGACCTCCCAAGTTTCTACGAGCAAGTGAAATGGGTGCTGAAGAAACCCCATGGGGTCATTGCTGCATGGTGCTACACTGTGCCTAGAGTTAACAACAATGTAGACACCGTCTTCGATCGGTTCTATTCCATTGATGTCGAACCCTACTGGGATCGGGCACGTAAATTAGTGGACAACAGGTACAGCACCATTGATTTTCCGTTTGAGCCGGTTAGGGGAGAAGGCAGTACAGGACCGTTTGAATTTGTGACGGAGAGATTGATGGATTTGGATGATTTTTTCACGTACATAAGGTCGTGGTCAGCATATCAGACGGCTAAGGACAAGGGTATTGAGCTTCTGAGTGACGATGTGATGGAGGAATTTAAGCAAGCTTGGAATGCTGGTGGCGGAGATGAACAGAAGGCTGTGAACTATCCTGTCTATTTAAGAGTCGGAAGAGTCGGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

226

Amino Acids

26.1

Weight (kDa)

5.2

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41380
fragaria_vesca	FvH4_3g01760 FvH4_3g01780
malus_domestica	MD14G1084000.v1.1
prunus_persica	Prupe.7G045000_v2.0.a1
pyrus_communis	pycom14g07380 pycom14g07470
rosa_chinensis	RchiOBHm_Chr5g0002601 RchiOBHm_Chr5g0063371 RchiOBHm_Chr6g0309701
rosa_laevigata	RLG00000031046 RLG00000035630
rosa_multiflora	Rmu_sc0006795.1_g000004 Rmu_sc0009084.1_g000008 Rmu_sc0011295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017330 Rroxscaffold_1G00073250
rosa_rugosa	Rorug04G0397600 Rorug04G0397600 Rorug05G0356800 Rorug05G0356900
rosa_samantha	Rh5AG021100 Rh5AG416200 Rh5BG023800 Rh5CG023200 Rh5CG454600 Rh5DG022200 Rh5DG444800 Rh6AG487400
rosa_wichuraiana	Rw5G001950 Rw5G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	1 cut(s)	618
AclWI	GGATC	1 cut(s)	387
AcsI	RAATTY	2 cut(s)	470, 590
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	3 cut(s)	410, 457, 515
AfiI	CCNNNNNNNGG	2 cut(s)	222, 443
AgsI	TTSAA	3 cut(s)	95, 164, 470
AluBI	AGCT	3 cut(s)	44, 565, 602
AluI	AGCT	3 cut(s)	44, 565, 602
Alw21I	GWGCWC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	387
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	2 cut(s)	470, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	2 cut(s)	484, 577
BceAI	ACGGC	1 cut(s)	558
BfaI	CTAG	3 cut(s)	41, 186, 312
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	461
BmrI	ACTGGG	1 cut(s)	385
BmuI	ACTGGG	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	546
BsaAI	YACGTR	2 cut(s)	389, 513
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 443
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	2 cut(s)	204, 285
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	2 cut(s)	222, 443
BseMI	GCAATG	2 cut(s)	204, 285
BseMII	CTCAG	2 cut(s)	36, 560
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	126
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	277
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	437
BslI	CCNNNNNNNGG	2 cut(s)	222, 443
BsmI	GAATGC	2 cut(s)	101, 613
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	132, 388
Bsp143I	GATC	3 cut(s)	48, 343, 379
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	618
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	37, 561
BspPI	GGATC	1 cut(s)	387
BsrDI	GCAATG	2 cut(s)	204, 285
BsrFI	RCCGGY	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	436
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	3 cut(s)	48, 343, 379
BssT1I	CCWWGG	1 cut(s)	277
Bst4CI	ACNGT	3 cut(s)	307, 337, 465
Bst6I	CTCTTC	1 cut(s)	661
BstBAI	YACGTR	2 cut(s)	389, 513
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	3 cut(s)	45, 546, 569
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	3 cut(s)	51, 346, 382
BstMBI	GATC	3 cut(s)	48, 343, 379
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	1 cut(s)	608
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	600
CfoI	GCGC	1 cut(s)	101
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	461
Csp6I	GTAC	3 cut(s)	409, 456, 514
CviAII	CATG	2 cut(s)	278, 294
CviJI	RGCY	9 cut(s)	44, 81, 176, 215, 436, 545, 565, 602, 635
CviKI_1	RGCY	9 cut(s)	44, 81, 176, 215, 436, 545, 565, 602, 635
CviQI	GTAC	3 cut(s)	409, 456, 514
DdeI	CTNAG	3 cut(s)	45, 546, 569
DpnI	GATC	3 cut(s)	50, 345, 381
DpnII	GATC	3 cut(s)	48, 343, 379
Eam1104I	CTCTTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	661
EciI	GGCGGA	1 cut(s)	633
Eco130I	CCWWGG	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	2 cut(s)	281, 297
FaiI	YATR	8 cut(s)	27, 57, 126, 152, 279, 295, 518, 535
FatI	CATG	2 cut(s)	277, 293
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	3 cut(s)	41, 186, 312
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	1 cut(s)	437
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	281, 297
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	2 cut(s)	660, 669
HpaI	GTTAAC	1 cut(s)	319
HpaII	CCGG	1 cut(s)	437
Hpy166II	GTNNAC	4 cut(s)	319, 331, 400, 640
Hpy188I	TCNGA	3 cut(s)	540, 570, 665
Hpy188III	TCNNGA	2 cut(s)	145, 673
Hpy8I	GTNNAC	4 cut(s)	319, 331, 400, 640
HpyAV	CCTTC	2 cut(s)	443, 625
HpyCH4III	ACNGT	3 cut(s)	307, 337, 465
HpyCH4IV	ACGT	2 cut(s)	388, 512
HpyCH4V	TGCA	4 cut(s)	25, 209, 220, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	608
HpyF3I	CTNAG	3 cut(s)	45, 546, 569
HpySE526I	ACGT	2 cut(s)	388, 512
Hsp92II	CATG	2 cut(s)	281, 297
HspAI	GCGC	1 cut(s)	99
KspAI	GTTAAC	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	48, 343, 379
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	1 cut(s)	277
MaeI	CTAG	3 cut(s)	41, 186, 312
MaeII	ACGT	2 cut(s)	388, 512
MaeIII	GTNAC	3 cut(s)	199, 475, 572
MalI	GATC	3 cut(s)	50, 345, 381
MboI	GATC	3 cut(s)	48, 343, 379
MboII	GAAGA	4 cut(s)	43, 280, 331, 678
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	2 cut(s)	132, 388
MluCI	AATT	8 cut(s)	7, 20, 159, 170, 392, 470, 590, 676
MlyI	GAGTC	2 cut(s)	669, 678
MmeI	TCCRAC	1 cut(s)	643
MnlI	CCTC	4 cut(s)	147, 187, 242, 580
MseI	TTAA	3 cut(s)	318, 594, 656
MspI	CCGG	1 cut(s)	437
Mva1269I	GAATGC	2 cut(s)	101, 613
MwoI	GCNNNNNNNGC	1 cut(s)	608
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	3 cut(s)	48, 343, 379
NlaIII	CATG	2 cut(s)	281, 297
NmuCI	GTSAC	3 cut(s)	199, 475, 572
PctI	GAATGC	2 cut(s)	101, 613
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	292
Ple19I	CGATCG	1 cut(s)	346
PleI	GAGTC	2 cut(s)	668, 677
PpsI	GAGTC	2 cut(s)	668, 677
Ppu21I	YACGTR	2 cut(s)	389, 513
PspPI	GGNCC	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	48
PsyI	GACNNNGTC	1 cut(s)	335
PvuI	CGATCG	1 cut(s)	346
RsaI	GTAC	3 cut(s)	410, 457, 515
RsaNI	GTAC	3 cut(s)	409, 456, 514
SaqAI	TTAA	3 cut(s)	318, 594, 656
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	3 cut(s)	48, 343, 379
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	2 cut(s)	669, 678
SduI	GDGCHC	2 cut(s)	132, 388
SetI	ASST	9 cut(s)	46, 157, 234, 391, 410, 515, 524, 567, 604
SinI	GGWCC	1 cut(s)	461
Sse9I	AATT	8 cut(s)	7, 20, 159, 170, 392, 470, 590, 676
SsiI	CCGC	1 cut(s)	618
SspMI	CTAG	3 cut(s)	41, 186, 312
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	3 cut(s)	307, 337, 465
TaiI	ACGT	2 cut(s)	391, 515
TaqI	TCGA	2 cut(s)	342, 366
TasI	AATT	8 cut(s)	7, 20, 159, 170, 392, 470, 590, 676
TatI	WGTACW	1 cut(s)	455
Tru1I	TTAA	3 cut(s)	318, 594, 656
Tru9I	TTAA	3 cut(s)	318, 594, 656
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	3 cut(s)	199, 475, 572
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	3 cut(s)	199, 475, 572
TspDTI	ATGAA	1 cut(s)	639
TspGWI	ACGGA	2 cut(s)	417, 494
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	2 cut(s)	470, 590
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	3 cut(s)	41, 186, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.