Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004800

Physical Location & Seq

Genomic Coordinates Reverse (-)

69503319 .. 69504191

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035630

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCGGATCTGTTCATCAAACAATCAAAGCAGTACGCTGTGGCTCGTCCAGGTTACTCAGAAAAGCTGTTTCAGTTCATTGCTTCCAAGGCTGCCGCCCACGACCTTGCATGGGACGTCGGCACCGGTAGTGGCCAGGCTGCCCGATCCCTAGCTGAGATCTTCAATAATGTGGTGGCAAAAGACACAAGCCAAAAGCAACTTGAATGCGCTCCAAAACTCCCCAATGTTCGCTATGAGCACACTCCTCCGGTCCTGACCATACCTGAAATTGAACGAAAATTGGCCTCAAAATCTAGTGTTGATTTAGTGACCATTGCACAAGCCCTGCATTGGTTTGACCTCCCAAGTTTCTACGAGCGAGTGAAATGGGTGCTGAAGAAACCCCATGGGGTCATTGCTGCATGGTGCTACACTGTGCCTAGAGTTAACAGCAATGTAGACACCGTCTTCGATCGGTTCTATTCCATTGATGTCGAACCCTACCGGGATCGGGCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

168

Amino Acids

18.93

Weight (kDa)

9.06

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 128	2.2e-09	Methyltransferase domain
Methyltransf_25	PF13649	39 - 128	5.2e-07	Methyltransferase domain
Methyltransf_12	PF08242	39 - 127	7.7e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41380
fragaria_vesca	FvH4_3g01760 FvH4_3g01780
malus_domestica	MD14G1084000.v1.1
prunus_persica	Prupe.7G045000_v2.0.a1
pyrus_communis	pycom14g07380 pycom14g07470
rosa_chinensis	RchiOBHm_Chr5g0002601 RchiOBHm_Chr5g0063371 RchiOBHm_Chr6g0309701
rosa_laevigata	RLG00000031046 RLG00000035630
rosa_multiflora	Rmu_sc0006795.1_g000004 Rmu_sc0009084.1_g000008 Rmu_sc0011295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017330 Rroxscaffold_1G00073250
rosa_rugosa	Rorug04G0397600 Rorug04G0397600 Rorug05G0356800 Rorug05G0356900
rosa_samantha	Rh5AG021100 Rh5AG416200 Rh5BG023800 Rh5CG023200 Rh5CG454600 Rh5DG022200 Rh5DG444800 Rh6AG487400
rosa_wichuraiana	Rw5G001950 Rw5G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	2 cut(s)	5, 96
AclWI	GGATC	3 cut(s)	15, 141, 498
AcoI	YGGCCR	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	3 cut(s)	112, 333, 493
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	166, 206, 275
AjnI	CCWGG	2 cut(s)	49, 135
AluBI	AGCT	2 cut(s)	67, 155
AluI	AGCT	2 cut(s)	67, 155
Alw21I	GWGCWC	1 cut(s)	243
AlwI	GGATC	3 cut(s)	15, 141, 498
AoxI	GGCC	2 cut(s)	133, 285
ApeKI	GCWGC	3 cut(s)	92, 140, 401
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AsiGI	ACCGGT	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	253
AsuC2I	CCSGG	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	442
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	79, 127, 388
BciT130I	CCWGG	2 cut(s)	51, 137
BcnI	CCSGG	1 cut(s)	488
BfaI	CTAG	3 cut(s)	152, 297, 423
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	4 cut(s)	93, 96, 141, 402
BlsI	GCNGC	4 cut(s)	94, 97, 142, 403
Bme1390I	CCNGG	3 cut(s)	51, 137, 488
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	3 cut(s)	51, 137, 488
BpiI	GAAGAC	1 cut(s)	442
BpuMI	CCSGG	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	87, 388
BsaWI	WCCGGW	2 cut(s)	125, 250
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 333, 493
Bse118I	RCCGGY	1 cut(s)	125
Bse3DI	GCAATG	4 cut(s)	78, 315, 396, 442
BseBI	CCWGG	2 cut(s)	51, 137
BseDI	CCNNGG	2 cut(s)	87, 388
BseLI	CCNNNNNNNGG	3 cut(s)	112, 333, 493
BseMI	GCAATG	4 cut(s)	78, 315, 396, 442
BseMII	CTCAG	2 cut(s)	72, 147
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	3 cut(s)	79, 127, 388
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	2 cut(s)	135, 287
BshNI	GGYRCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	3 cut(s)	126, 251, 487
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	3 cut(s)	112, 333, 493
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	135, 287
Bsp1286I	GDGCHC	2 cut(s)	243, 499
Bsp143I	GATC	5 cut(s)	7, 146, 159, 454, 490
Bsp19I	CCATGG	1 cut(s)	388
BspACI	CCGC	2 cut(s)	5, 96
BspANI	GGCC	2 cut(s)	135, 287
BspCNI	CTCAG	2 cut(s)	71, 148
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	3 cut(s)	15, 141, 498
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	4 cut(s)	78, 315, 396, 442
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	87, 388
BssMI	GATC	5 cut(s)	7, 146, 159, 454, 490
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	87, 388
Bst2UI	CCWGG	2 cut(s)	51, 137
Bst4CI	ACNGT	2 cut(s)	418, 448
BstACI	GRCGYC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	58, 156
BstDSI	CCRYGG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	5 cut(s)	10, 149, 162, 457, 493
BstMBI	GATC	5 cut(s)	7, 146, 159, 454, 490
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	2 cut(s)	51, 137
BstSCI	CCNGG	3 cut(s)	49, 135, 486
BstV1I	GCAGC	3 cut(s)	79, 127, 388
BstV2I	GAAGAC	1 cut(s)	442
BstX2I	RGATCY	2 cut(s)	7, 159
BstYI	RGATCY	2 cut(s)	7, 159
BsuRI	GGCC	2 cut(s)	135, 287
BtgI	CCRYGG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	414
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	34
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	3 cut(s)	111, 389, 405
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	58, 156
DpnI	GATC	5 cut(s)	9, 148, 161, 456, 492
DpnII	GATC	5 cut(s)	7, 146, 159, 454, 490
EaeI	YGGCCR	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	87, 388
Eco24I	GRGCYC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	398
EcoRII	CCWGG	2 cut(s)	49, 135
EcoT14I	CCWWGG	2 cut(s)	87, 388
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	2 cut(s)	87, 388
FaeI	CATG	3 cut(s)	114, 392, 408
FaiI	YATR	5 cut(s)	112, 237, 263, 390, 406
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	110, 388, 404
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	4 cut(s)	93, 96, 141, 402
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	4 cut(s)	93, 96, 141, 402
FspBI	CTAG	3 cut(s)	152, 297, 423
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	4 cut(s)	93, 96, 141, 402
HaeIII	GGCC	2 cut(s)	135, 287
HapII	CCGG	3 cut(s)	126, 251, 487
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	114, 392, 408
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	3 cut(s)	126, 251, 487
Hpy166II	GTNNAC	2 cut(s)	430, 442
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	2 cut(s)	430, 442
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	418, 448
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	4 cut(s)	110, 320, 331, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	58, 156
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	114, 392, 408
HspAI	GCGC	1 cut(s)	210
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	7, 146, 159, 454, 490
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	3 cut(s)	79, 127, 388
MaeI	CTAG	3 cut(s)	152, 297, 423
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	53, 310
MalI	GATC	5 cut(s)	9, 148, 161, 456, 492
MboI	GATC	5 cut(s)	7, 146, 159, 454, 490
MboII	GAAGA	3 cut(s)	154, 391, 442
MflI	RGATCY	2 cut(s)	7, 159
MhlI	GDGCHC	2 cut(s)	243, 499
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	2 cut(s)	270, 281
MluNI	TGGCCA	1 cut(s)	135
MnlI	CCTC	3 cut(s)	258, 298, 353
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	2 cut(s)	429, 502
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	3 cut(s)	126, 251, 487
MspR9I	CCNGG	3 cut(s)	51, 137, 488
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	2 cut(s)	51, 137
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	488
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	5 cut(s)	7, 146, 159, 454, 490
NlaIII	CATG	3 cut(s)	114, 392, 408
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	310
PctI	GAATGC	1 cut(s)	212
PflFI	GACNNNGTC	1 cut(s)	446
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	4 cut(s)	94, 97, 142, 403
Ple19I	CGATCG	1 cut(s)	457
Psp6I	CCWGG	2 cut(s)	49, 135
PspGI	CCWGG	2 cut(s)	49, 135
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	7, 159
PsyI	GACNNNGTC	1 cut(s)	446
PvuI	CGATCG	1 cut(s)	457
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	429, 502
SatI	GCNGC	4 cut(s)	93, 96, 141, 402
Sau3AI	GATC	5 cut(s)	7, 146, 159, 454, 490
Sau96I	GGNCC	1 cut(s)	253
ScrFI	CCNGG	3 cut(s)	51, 137, 488
SduI	GDGCHC	2 cut(s)	243, 499
SetI	ASST	7 cut(s)	55, 69, 108, 120, 157, 268, 345
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	2 cut(s)	270, 281
SsiI	CCGC	2 cut(s)	5, 96
SspMI	CTAG	3 cut(s)	152, 297, 423
StyD4I	CCNGG	3 cut(s)	49, 135, 486
StyI	CCWWGG	2 cut(s)	87, 388
TaaI	ACNGT	2 cut(s)	418, 448
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	453, 477
TasI	AATT	2 cut(s)	270, 281
TauI	GCSGC	1 cut(s)	98
Tru1I	TTAA	2 cut(s)	429, 502
Tru9I	TTAA	2 cut(s)	429, 502
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	3 cut(s)	92, 140, 401
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	4, 67
TspRI	CASTG	1 cut(s)	421
Tth111I	GACNNNGTC	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	3 cut(s)	152, 297, 423
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.