Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004800

Physical Location & Seq

Genomic Coordinates Reverse (-)

7503376 .. 7504737

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCGAAGCTGTTCATAAAACAATCAAAGCAATATGCCGAGACTCGGCCATGCTACCCAGAAAAGCTGTTTGATTACATTGCCTCCAGGACCCCTTGTCACGACCTCGCATGGGACGTCGGCACCGGCAGTGGCCAGGCTGCCCGATCCCTAGCCGGGATCTTCAAGAATGTGATAGCCACAGATACAAGCCAAAAACAACTCGAGTTGGCACCCAAGCTGCCCAATATTCGCTACGAGCACACCCCTCCTGTCATGTCAATAGCCGAGGTAGAACAGAAGTTGACTCCAAAATCAAGTGTTGATCTGGTGATCGTTGCTCAGGCCCTCCATTGGTTTGACCTCCCCAATTTCTACCAACAAGTGAAACATGTACTGAAGAAACCTAATGGTGTCCTTGCAGCATGGTGCTATACAGTGCCTAGGGTTAACAGCATTGTAGACACCGTCTTTGATCGTTTTTACACCGTTGATTCTGATCCTTACTGGGATCCAGCACGTAAATTGGTGAACGACAAGTATAAGACTATCGATTTTCCATTTGTGCCGGTGGACGGAGAAGAGAACACAGGACCGTTTGAATTCGTGACAGAGCAGTTGATGGATTTGGATGGCTTTTTTACTTACATAAGGTCATGGTCTGCATATCAGACGGCAAAAGAAAAGGGTGTTGAGCTCTTGGGTGATCATGTGATTGAGGCATTTAAGCAAGCTTGGAATGAAGGAGGAGACCATGGTCCGAAGGATGTCAAATTTCCAGTCAATTTAAGAATTGGGAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

262

Amino Acids

29.68

Weight (kDa)

6.09

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 134	1.8e-11	Methyltransferase domain
Methyltransf_25	PF13649	39 - 128	6.9e-09	Methyltransferase domain
Methyltransf_12	PF08242	39 - 133	8.9e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41380
fragaria_vesca	FvH4_3g01760 FvH4_3g01780
malus_domestica	MD14G1084000.v1.1
prunus_persica	Prupe.7G045000_v2.0.a1
pyrus_communis	pycom14g07380 pycom14g07470
rosa_chinensis	RchiOBHm_Chr5g0002601 RchiOBHm_Chr5g0063371 RchiOBHm_Chr6g0309701
rosa_laevigata	RLG00000031046 RLG00000035630
rosa_multiflora	Rmu_sc0006795.1_g000004 Rmu_sc0009084.1_g000008 Rmu_sc0011295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017330 Rroxscaffold_1G00073250
rosa_rugosa	Rorug04G0397600 Rorug04G0397600 Rorug05G0356800 Rorug05G0356900
rosa_samantha	Rh5AG021100 Rh5AG416200 Rh5BG023800 Rh5CG023200 Rh5CG454600 Rh5DG022200 Rh5DG444800 Rh6AG487400
rosa_wichuraiana	Rw5G001950 Rw5G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccB1I	GGYRCC	2 cut(s)	122, 211
AccI	GTMKAC	1 cut(s)	441
AclWI	GGATC	5 cut(s)	141, 167, 473, 485, 498
AcoI	YGGCCR	2 cut(s)	47, 133
AcsI	RAATTY	2 cut(s)	581, 752
AcuI	CTGAAG	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	5 cut(s)	45, 112, 156, 333, 554
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	166, 581
AhdI	GACNNNNNGTC	1 cut(s)	96
AjnI	CCWGG	2 cut(s)	86, 135
AluBI	AGCT	5 cut(s)	10, 67, 220, 676, 713
AluI	AGCT	5 cut(s)	10, 67, 220, 676, 713
Alw21I	GWGCWC	2 cut(s)	243, 678
Alw26I	GTCTC	2 cut(s)	35, 723
AlwI	GGATC	5 cut(s)	141, 167, 473, 485, 498
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	3 cut(s)	47, 133, 324
ApeKI	GCWGC	3 cut(s)	140, 220, 401
ApoI	RAATTY	2 cut(s)	581, 752
ArsI	GACNNNNNNTTYG	4 cut(s)	434, 466, 744, 776
Asp700I	GAANNNNTTC	1 cut(s)	11
AspA2I	CCTAGG	1 cut(s)	422
AspS9I	GGNCC	4 cut(s)	90, 325, 572, 737
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	322, 520, 695
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	3 cut(s)	90, 572, 737
AvrII	CCTAGG	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	135
BamHI	GGATCC	1 cut(s)	490
BanI	GGYRCC	2 cut(s)	122, 211
BanII	GRGCYC	1 cut(s)	678
Bbv12I	GWGCWC	2 cut(s)	243, 678
BbvI	GCAGC	3 cut(s)	127, 207, 413
BccI	CCATC	2 cut(s)	595, 605
BceAI	ACGGC	1 cut(s)	669
BciT130I	CCWGG	2 cut(s)	88, 137
BclI	TGATCA	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	35, 723
BfaI	CTAG	2 cut(s)	152, 423
BisI	GCNGC	3 cut(s)	141, 221, 402
BlnI	CCTAGG	1 cut(s)	422
BlsI	GCNGC	3 cut(s)	142, 222, 403
Bme1390I	CCNGG	3 cut(s)	88, 137, 157
Bme18I	GGWCC	3 cut(s)	90, 572, 737
BmeRI	GACNNNNNGTC	1 cut(s)	96
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	4 cut(s)	90, 325, 572, 737
BmiI	GGNNCC	4 cut(s)	92, 124, 213, 492
BmrFI	CCNGG	3 cut(s)	88, 137, 157
BmrI	ACTGGG	1 cut(s)	496
BmuI	ACTGGG	1 cut(s)	496
BoxI	GACNNNNGTC	1 cut(s)	735
BpmI	CTGGAG	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	157
Bsa29I	ATCGAT	1 cut(s)	531
BsaAI	YACGTR	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	723
BsaJI	CCNNGG	3 cut(s)	267, 422, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 112, 156, 333, 554
Bse118I	RCCGGY	2 cut(s)	125, 547
Bse1I	ACTGG	2 cut(s)	491, 758
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	2 cut(s)	88, 137
BseCI	ATCGAT	1 cut(s)	531
BseDI	CCNNGG	3 cut(s)	267, 422, 733
BseGI	GGATG	2 cut(s)	616, 751
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	5 cut(s)	45, 112, 156, 333, 554
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	2 cut(s)	491, 758
BseRI	GAGGAG	1 cut(s)	741
BseXI	GCAGC	3 cut(s)	127, 207, 413
BshFI	GGCC	3 cut(s)	49, 135, 326
BshNI	GGYRCC	2 cut(s)	122, 211
BshVI	ATCGAT	1 cut(s)	531
BsiHKAI	GWGCWC	2 cut(s)	243, 678
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	3 cut(s)	126, 156, 548
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	5 cut(s)	45, 112, 156, 333, 554
BsmAI	GTCTC	2 cut(s)	35, 723
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	3 cut(s)	49, 135, 326
Bso31I	GGTCTC	1 cut(s)	723
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	243, 678
Bsp143I	GATC	8 cut(s)	146, 159, 304, 312, 454, 478, 490, 685
Bsp19I	CCATGG	1 cut(s)	733
BspANI	GGCC	3 cut(s)	49, 135, 326
BspCNI	CTCAG	1 cut(s)	334
BspDI	ATCGAT	1 cut(s)	531
BspLI	GGNNCC	4 cut(s)	92, 124, 213, 492
BspPI	GGATC	5 cut(s)	141, 167, 473, 485, 498
BspT107I	GGYRCC	2 cut(s)	122, 211
BspTNI	GGTCTC	1 cut(s)	723
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	2 cut(s)	125, 547
BsrI	ACTGG	2 cut(s)	491, 758
BssAI	RCCGGY	2 cut(s)	125, 547
BssECI	CCNNGG	3 cut(s)	267, 422, 733
BssMI	GATC	8 cut(s)	146, 159, 304, 312, 454, 478, 490, 685
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	422, 733
Bst2UI	CCWGG	2 cut(s)	88, 137
Bst4CI	ACNGT	4 cut(s)	418, 448, 469, 576
Bst6I	CTCTTC	1 cut(s)	555
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	733
BstF5I	GGATG	2 cut(s)	616, 751
BstKTI	GATC	8 cut(s)	149, 162, 307, 315, 457, 481, 493, 688
BstMAI	GTCTC	2 cut(s)	35, 723
BstMBI	GATC	8 cut(s)	146, 159, 304, 312, 454, 478, 490, 685
BstNI	CCWGG	2 cut(s)	88, 137
BstNSI	RCATGY	1 cut(s)	374
BstPAI	GACNNNNGTC	1 cut(s)	735
BstSCI	CCNGG	3 cut(s)	86, 135, 155
BstV1I	GCAGC	3 cut(s)	127, 207, 413
BstX2I	RGATCY	2 cut(s)	159, 490
BstYI	RGATCY	2 cut(s)	159, 490
Bsu15I	ATCGAT	1 cut(s)	531
BsuRI	GGCC	3 cut(s)	49, 135, 326
BsuTUI	ATCGAT	1 cut(s)	531
BtgI	CCRYGG	1 cut(s)	733
BtsCI	GGATG	2 cut(s)	616, 751
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 423
Cac8I	GCNNGC	1 cut(s)	711
Cfr10I	RCCGGY	2 cut(s)	125, 547
Cfr13I	GGNCC	4 cut(s)	90, 325, 572, 737
ClaI	ATCGAT	1 cut(s)	531
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	8 cut(s)	51, 111, 256, 371, 405, 636, 689, 734
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	8 cut(s)	148, 161, 306, 314, 456, 480, 492, 687
DpnII	GATC	8 cut(s)	146, 159, 304, 312, 454, 478, 490, 685
DriI	GACNNNNNGTC	1 cut(s)	96
EaeI	YGGCCR	2 cut(s)	47, 133
Eam1104I	CTCTTC	1 cut(s)	555
Eam1105I	GACNNNNNGTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	555
Ecl136II	GAGCTC	1 cut(s)	676
Eco130I	CCWWGG	2 cut(s)	422, 733
Eco24I	GRGCYC	1 cut(s)	678
Eco31I	GGTCTC	1 cut(s)	723
Eco47I	GGWCC	3 cut(s)	90, 572, 737
Eco53kI	GAGCTC	1 cut(s)	676
Eco57I	CTGAAG	1 cut(s)	398
Eco88I	CYCGRG	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	676
EcoO109I	RGGNCCY	2 cut(s)	90, 325
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	2 cut(s)	86, 135
EcoT14I	CCWWGG	2 cut(s)	422, 733
EcoT38I	GRGCYC	1 cut(s)	678
ErhI	CCWWGG	2 cut(s)	422, 733
FaeI	CATG	8 cut(s)	54, 114, 259, 374, 408, 639, 692, 737
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	8 cut(s)	50, 110, 255, 370, 404, 635, 688, 733
FbaI	TGATCA	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	141, 221, 402
FokI	GGATG	2 cut(s)	623, 758
FriOI	GRGCYC	1 cut(s)	678
Fsp4HI	GCNGC	3 cut(s)	141, 221, 402
FspBI	CTAG	2 cut(s)	152, 423
GluI	GCNGC	3 cut(s)	141, 221, 402
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	49, 135, 326
HapII	CCGG	3 cut(s)	126, 156, 548
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	8 cut(s)	54, 114, 259, 374, 408, 639, 692, 737
HincII	GTYRAC	2 cut(s)	285, 430
HindII	GTYRAC	2 cut(s)	285, 430
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	3 cut(s)	43, 286, 473
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	3 cut(s)	126, 156, 548
HphI	GGTGA	3 cut(s)	322, 520, 695
Hpy166II	GTNNAC	5 cut(s)	285, 430, 442, 511, 553
Hpy188I	TCNGA	3 cut(s)	478, 651, 741
Hpy188III	TCNNGA	3 cut(s)	101, 166, 586
Hpy8I	GTNNAC	5 cut(s)	285, 430, 442, 511, 553
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	716, 736
HpyCH4III	ACNGT	4 cut(s)	418, 448, 469, 576
HpyCH4IV	ACGT	2 cut(s)	117, 499
HpyCH4V	TGCA	2 cut(s)	401, 644
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	2 cut(s)	117, 499
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	8 cut(s)	54, 114, 259, 374, 408, 639, 692, 737
Ksp22I	TGATCA	1 cut(s)	685
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	8 cut(s)	146, 159, 304, 312, 454, 478, 490, 685
Lsp1109I	GCAGC	3 cut(s)	127, 207, 413
MaeI	CTAG	2 cut(s)	152, 423
MaeII	ACGT	2 cut(s)	117, 499
MaeIII	GTNAC	2 cut(s)	98, 586
MalI	GATC	8 cut(s)	148, 161, 306, 314, 456, 480, 492, 687
MboI	GATC	8 cut(s)	146, 159, 304, 312, 454, 478, 490, 685
MboII	GAAGA	3 cut(s)	154, 391, 572
MflI	RGATCY	2 cut(s)	159, 490
MhlI	GDGCHC	2 cut(s)	243, 678
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	6 cut(s)	349, 503, 581, 752, 763, 771
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	37, 280
MnlI	CCTC	8 cut(s)	94, 116, 258, 262, 338, 353, 691, 719
Mox20I	TGGCCA	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	3 cut(s)	429, 705, 767
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	3 cut(s)	126, 156, 548
MspR9I	CCNGG	3 cut(s)	88, 137, 157
MvaI	CCWGG	2 cut(s)	88, 137
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	733
NdeII	GATC	8 cut(s)	146, 159, 304, 312, 454, 478, 490, 685
NlaIII	CATG	8 cut(s)	54, 114, 259, 374, 408, 639, 692, 737
NlaIV	GGNNCC	4 cut(s)	92, 124, 213, 492
NmeAIII	GCCGAG	3 cut(s)	25, 64, 292
NmuCI	GTSAC	2 cut(s)	98, 586
NspI	RCATGY	1 cut(s)	374
PaeR7I	CTCGAG	1 cut(s)	203
PciI	ACATGT	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	473
PflFI	GACNNNGTC	1 cut(s)	446
PfoI	TCCNGGA	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	142, 222, 403
PleI	GAGTC	2 cut(s)	37, 280
PpsI	GAGTC	2 cut(s)	37, 280
Ppu21I	YACGTR	1 cut(s)	500
PpuMI	RGGWCCY	1 cut(s)	90
PscI	ACATGT	1 cut(s)	370
PshAI	GACNNNNGTC	1 cut(s)	735
Psp124BI	GAGCTC	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	86, 135
PspGI	CCWGG	2 cut(s)	86, 135
PspN4I	GGNNCC	4 cut(s)	92, 124, 213, 492
PspPI	GGNCC	4 cut(s)	90, 325, 572, 737
PspPPI	RGGWCCY	1 cut(s)	90
PspXI	VCTCGAGB	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	159, 490
PsyI	GACNNNGTC	1 cut(s)	446
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	678
SaqAI	TTAA	3 cut(s)	429, 705, 767
SatI	GCNGC	3 cut(s)	141, 221, 402
Sau3AI	GATC	8 cut(s)	146, 159, 304, 312, 454, 478, 490, 685
Sau96I	GGNCC	4 cut(s)	90, 325, 572, 737
SchI	GAGTC	2 cut(s)	37, 280
ScrFI	CCNGG	3 cut(s)	88, 137, 157
SduI	GDGCHC	2 cut(s)	243, 678
Sfr274I	CTCGAG	1 cut(s)	203
SinI	GGWCC	3 cut(s)	90, 572, 737
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	6 cut(s)	349, 503, 581, 752, 763, 771
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	2 cut(s)	152, 423
SstI	GAGCTC	1 cut(s)	678
StyD4I	CCNGG	3 cut(s)	86, 135, 155
StyI	CCWWGG	2 cut(s)	422, 733
TaaI	ACNGT	4 cut(s)	418, 448, 469, 576
TaiI	ACGT	2 cut(s)	120, 502
TaqI	TCGA	3 cut(s)	5, 204, 531
TasI	AATT	6 cut(s)	349, 503, 581, 752, 763, 771
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	3 cut(s)	429, 705, 767
Tru9I	TTAA	3 cut(s)	429, 705, 767
TscAI	CASTG	2 cut(s)	136, 423
TseFI	GTSAC	2 cut(s)	98, 586
TseI	GCWGC	3 cut(s)	140, 220, 401
Tsp45I	GTSAC	2 cut(s)	98, 586
TspDTI	ATGAA	2 cut(s)	4, 735
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	2 cut(s)	136, 423
Tth111I	GACNNNGTC	1 cut(s)	446
VpaK11BI	GGWCC	3 cut(s)	90, 572, 737
XapI	RAATTY	2 cut(s)	581, 752
XceI	RCATGY	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	203
XmaJI	CCTAGG	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	441
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	2 cut(s)	152, 423
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.