Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004800

Physical Location & Seq

Genomic Coordinates Reverse (-)

1474743 .. 1477349

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG021100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGGATCTGTTCATCAAACAATCAAAGCAGTACGCTATGGCTCGGCCAGGTTACCCAGAAAAGCTGTTTCAGTTCATTGCTTCCAAGGCTGCCGCCCACGACCTTGCATGGGACGTCGGCACCGGTAGCGGCCAGGCTGCCCGATCCCTAGCTGAGATCTTCAAGAATGTGGTGGCCACAGACACAAGCCAAAAGCAACTTGATTGCGCTCCAAAACTCCCCAATGTTCGCTATGAGCACACTCCTCCAGTCCTGACCATACCCGAAATTGAACAAAAATTGGCCCCAAAATCAAGTGTTGATTTAGTGACCATTGCACAAGCCCTCCATTGGCTTGACCTCCCAAGTTTCTACGAACAAATGAAATGGGTGCTGAAGAAACCCAATGGGGTCATTGCTGCATGGTGCTACACTGTGCCTAGAGTTAACAACAATGTAGACACCGTCTTCGATCGGTTCTATTCCATTGATGTCGAACCCTACTGGGATCGGGCGCGTAAATTAGTGGACAAGAAGTACAGCACTATTGATTTTCCGTTTGAGCCGGTTAGCGGAGAAGACAATACAGGACCATTCGAGTTTGCTACGGAGAGATCGATGGGTTTGGATGATTTTTTCACGTATATAAGGTCGTGGTCAGCTTATCAGACGGCTAAGGAAAAGGGTGTTGAGCTTCTGAGTGATGAGGTGATGGAGGCATTTAAGCAAGCTTGGAATGCTGATGGCGGAGATGGACAGAAGGCTGTGAACTATCCTATCAATTTAAGAATCGGAAGAGTGGGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

263

Amino Acids

29.72

Weight (kDa)

5.52

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 133	1.4e-10	Methyltransferase domain
Methyltransf_12	PF08242	39 - 132	6.9e-09	Methyltransferase domain
Methyltransf_25	PF13649	39 - 128	7.1e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41380
fragaria_vesca	FvH4_3g01760 FvH4_3g01780
malus_domestica	MD14G1084000.v1.1
prunus_persica	Prupe.7G045000_v2.0.a1
pyrus_communis	pycom14g07380 pycom14g07470
rosa_chinensis	RchiOBHm_Chr5g0002601 RchiOBHm_Chr5g0063371 RchiOBHm_Chr6g0309701
rosa_laevigata	RLG00000031046 RLG00000035630
rosa_multiflora	Rmu_sc0006795.1_g000004 Rmu_sc0009084.1_g000008 Rmu_sc0011295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017330 Rroxscaffold_1G00073250
rosa_rugosa	Rorug04G0397600 Rorug04G0397600 Rorug05G0356800 Rorug05G0356900
rosa_samantha	Rh5AG021100 Rh5AG416200 Rh5BG023800 Rh5CG023200 Rh5CG454600 Rh5DG022200 Rh5DG444800 Rh6AG487400
rosa_wichuraiana	Rw5G001950 Rw5G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	1 cut(s)	499
AciI	CCGC	5 cut(s)	5, 96, 132, 555, 729
AclWI	GGATC	3 cut(s)	15, 141, 498
AcoI	YGGCCR	3 cut(s)	47, 133, 177
AcuI	CTGAAG	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	2 cut(s)	35, 521
AfiI	CCNNNNNNNGG	3 cut(s)	112, 333, 554
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	166, 275
AjnI	CCWGG	2 cut(s)	49, 135
AluBI	AGCT	5 cut(s)	67, 155, 644, 676, 713
AluI	AGCT	5 cut(s)	67, 155, 644, 676, 713
Alw21I	GWGCWC	1 cut(s)	243
AlwI	GGATC	3 cut(s)	15, 141, 498
AoxI	GGCC	4 cut(s)	47, 133, 177, 285
ApeKI	GCWGC	3 cut(s)	92, 140, 401
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AsiGI	ACCGGT	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	212, 499
AspS9I	GGNCC	2 cut(s)	286, 572
AsuHPI	GGTGA	1 cut(s)	703
AvaII	GGWCC	1 cut(s)	572
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	442, 567
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	79, 127, 388
BccI	CCATC	4 cut(s)	595, 688, 719, 728
BceAI	ACGGC	1 cut(s)	669
BciT130I	CCWGG	2 cut(s)	51, 137
BfaI	CTAG	2 cut(s)	152, 423
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	5 cut(s)	93, 96, 133, 141, 402
BlsI	GCNGC	5 cut(s)	94, 97, 134, 142, 403
Bme1390I	CCNGG	2 cut(s)	51, 137
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	2 cut(s)	286, 572
BmiI	GGNNCC	2 cut(s)	124, 288
BmrFI	CCNGG	2 cut(s)	51, 137
BmrI	ACTGGG	1 cut(s)	496
BmuI	ACTGGG	1 cut(s)	496
BpiI	GAAGAC	2 cut(s)	442, 567
BpmI	CTGGAG	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	657
Bsa29I	ATCGAT	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	624
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 333, 554
Bse118I	RCCGGY	2 cut(s)	125, 547
Bse1I	ACTGG	2 cut(s)	251, 491
Bse3DI	GCAATG	3 cut(s)	78, 315, 396
BseBI	CCWGG	2 cut(s)	51, 137
BseCI	ATCGAT	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	3 cut(s)	112, 333, 554
BseMI	GCAATG	3 cut(s)	78, 315, 396
BseMII	CTCAG	2 cut(s)	147, 671
BseNI	ACTGG	2 cut(s)	251, 491
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	3 cut(s)	79, 127, 388
Bsh1236I	CGCG	1 cut(s)	499
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	4 cut(s)	49, 135, 179, 287
BshNI	GGYRCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	599
BsiEI	CGRYCG	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	126, 548
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	3 cut(s)	112, 333, 554
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	4 cut(s)	49, 135, 179, 287
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	6 cut(s)	7, 146, 159, 454, 490, 596
BspACI	CCGC	5 cut(s)	5, 96, 132, 555, 729
BspANI	GGCC	4 cut(s)	49, 135, 179, 287
BspCNI	CTCAG	2 cut(s)	148, 672
BspDI	ATCGAT	1 cut(s)	599
BspFNI	CGCG	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	124, 288
BspPI	GGATC	3 cut(s)	15, 141, 498
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	3 cut(s)	78, 315, 396
BsrFI	RCCGGY	2 cut(s)	125, 547
BsrI	ACTGG	2 cut(s)	251, 491
BssAI	RCCGGY	2 cut(s)	125, 547
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	6 cut(s)	7, 146, 159, 454, 490, 596
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	2 cut(s)	51, 137
Bst4CI	ACNGT	2 cut(s)	418, 448
Bst6I	CTCTTC	1 cut(s)	772
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	624
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	3 cut(s)	156, 657, 680
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	616
BstFNI	CGCG	1 cut(s)	499
BstHHI	GCGC	2 cut(s)	212, 499
BstKTI	GATC	6 cut(s)	10, 149, 162, 457, 493, 599
BstMBI	GATC	6 cut(s)	7, 146, 159, 454, 490, 596
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 129, 719
BstNI	CCWGG	2 cut(s)	51, 137
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	49, 135
BstUI	CGCG	1 cut(s)	499
BstV1I	GCAGC	3 cut(s)	79, 127, 388
BstV2I	GAAGAC	2 cut(s)	442, 567
BstX2I	RGATCY	2 cut(s)	7, 159
BstYI	RGATCY	2 cut(s)	7, 159
Bsu15I	ATCGAT	1 cut(s)	599
BsuRI	GGCC	4 cut(s)	49, 135, 179, 287
BsuTUI	ATCGAT	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	711
CfoI	GCGC	2 cut(s)	212, 499
Cfr10I	RCCGGY	2 cut(s)	125, 547
Cfr13I	GGNCC	2 cut(s)	286, 572
ClaI	ATCGAT	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	34, 520
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	2 cut(s)	111, 405
CviQI	GTAC	2 cut(s)	34, 520
DdeI	CTNAG	3 cut(s)	156, 657, 680
DpnI	GATC	6 cut(s)	9, 148, 161, 456, 492, 598
DpnII	GATC	6 cut(s)	7, 146, 159, 454, 490, 596
EaeI	YGGCCR	3 cut(s)	47, 133, 177
Eam1104I	CTCTTC	1 cut(s)	772
EarI	CTCTTC	1 cut(s)	772
EciI	GGCGGA	2 cut(s)	20, 744
Eco130I	CCWWGG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	572
Eco57I	CTGAAG	1 cut(s)	398
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	49, 135
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	2 cut(s)	114, 408
FaiI	YATR	7 cut(s)	41, 112, 237, 263, 406, 627, 629
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	2 cut(s)	110, 404
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	5 cut(s)	93, 96, 133, 141, 402
FokI	GGATG	1 cut(s)	623
Fsp4HI	GCNGC	5 cut(s)	93, 96, 133, 141, 402
FspBI	CTAG	2 cut(s)	152, 423
GlaI	GCGC	2 cut(s)	211, 498
GluI	GCNGC	5 cut(s)	93, 96, 133, 141, 402
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	4 cut(s)	49, 135, 179, 287
HapII	CCGG	2 cut(s)	126, 548
HhaI	GCGC	2 cut(s)	212, 499
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	114, 408
Hin6I	GCGC	2 cut(s)	210, 497
HinP1I	GCGC	2 cut(s)	210, 497
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	1 cut(s)	771
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	2 cut(s)	126, 548
HphI	GGTGA	1 cut(s)	703
Hpy166II	GTNNAC	4 cut(s)	430, 442, 511, 751
Hpy188I	TCNGA	3 cut(s)	651, 681, 776
Hpy188III	TCNNGA	2 cut(s)	166, 256
Hpy8I	GTNNAC	4 cut(s)	430, 442, 511, 751
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	736
HpyCH4III	ACNGT	2 cut(s)	418, 448
HpyCH4IV	ACGT	2 cut(s)	117, 623
HpyCH4V	TGCA	3 cut(s)	110, 320, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 129, 719
HpyF3I	CTNAG	3 cut(s)	156, 657, 680
HpySE526I	ACGT	2 cut(s)	117, 623
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	114, 408
HspAI	GCGC	2 cut(s)	210, 497
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	6 cut(s)	7, 146, 159, 454, 490, 596
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	3 cut(s)	79, 127, 388
MaeI	CTAG	2 cut(s)	152, 423
MaeII	ACGT	2 cut(s)	117, 623
MaeIII	GTNAC	2 cut(s)	53, 310
MalI	GATC	6 cut(s)	9, 148, 161, 456, 492, 598
MboI	GATC	6 cut(s)	7, 146, 159, 454, 490, 596
MboII	GAAGA	5 cut(s)	154, 391, 442, 572, 789
MflI	RGATCY	2 cut(s)	7, 159
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	5 cut(s)	270, 281, 503, 763, 787
MluNI	TGGCCA	1 cut(s)	179
MnlI	CCTC	5 cut(s)	258, 338, 353, 682, 691
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	3 cut(s)	429, 705, 767
Msp20I	TGGCCA	1 cut(s)	179
MspI	CCGG	2 cut(s)	126, 548
MspR9I	CCNGG	2 cut(s)	51, 137
Mva1269I	GAATGC	1 cut(s)	724
MvaI	CCWGG	2 cut(s)	51, 137
MvnI	CGCG	1 cut(s)	499
MwoI	GCNNNNNNNGC	3 cut(s)	89, 129, 719
NdeII	GATC	6 cut(s)	7, 146, 159, 454, 490, 596
NlaIII	CATG	2 cut(s)	114, 408
NlaIV	GGNNCC	2 cut(s)	124, 288
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	596
PctI	GAATGC	1 cut(s)	724
PfeI	GAWTC	1 cut(s)	771
PflFI	GACNNNGTC	1 cut(s)	446
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	5 cut(s)	94, 97, 134, 142, 403
Ple19I	CGATCG	1 cut(s)	457
Ppu21I	YACGTR	1 cut(s)	624
Psp6I	CCWGG	2 cut(s)	49, 135
PspEI	GGTNACC	1 cut(s)	53
PspGI	CCWGG	2 cut(s)	49, 135
PspN4I	GGNNCC	2 cut(s)	124, 288
PspPI	GGNCC	2 cut(s)	286, 572
PsuI	RGATCY	2 cut(s)	7, 159
PsyI	GACNNNGTC	1 cut(s)	446
PvuI	CGATCG	1 cut(s)	457
RsaI	GTAC	2 cut(s)	35, 521
RsaNI	GTAC	2 cut(s)	34, 520
SaqAI	TTAA	3 cut(s)	429, 705, 767
SatI	GCNGC	5 cut(s)	93, 96, 133, 141, 402
Sau3AI	GATC	6 cut(s)	7, 146, 159, 454, 490, 596
Sau96I	GGNCC	2 cut(s)	286, 572
ScrFI	CCNGG	2 cut(s)	51, 137
SduI	GDGCHC	1 cut(s)	243
SinI	GGWCC	1 cut(s)	572
Sse9I	AATT	5 cut(s)	270, 281, 503, 763, 787
SsiI	CCGC	5 cut(s)	5, 96, 132, 555, 729
SspMI	CTAG	2 cut(s)	152, 423
StyD4I	CCNGG	2 cut(s)	49, 135
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	418, 448
TaiI	ACGT	2 cut(s)	120, 626
TaqI	TCGA	4 cut(s)	453, 477, 579, 599
TasI	AATT	5 cut(s)	270, 281, 503, 763, 787
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	2 cut(s)	98, 135
TfiI	GAWTC	1 cut(s)	771
Tru1I	TTAA	3 cut(s)	429, 705, 767
Tru9I	TTAA	3 cut(s)	429, 705, 767
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	3 cut(s)	92, 140, 401
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	4, 67, 380
TspGWI	ACGGA	2 cut(s)	528, 605
TspRI	CASTG	1 cut(s)	421
Tth111I	GACNNNGTC	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	2 cut(s)	152, 423
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.