Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004800

Physical Location & Seq

Genomic Coordinates Reverse (-)

907610 .. 909061

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCGGATCTGTTCCTCAAACAATCAAAGCAGTACGCGGTGGGTCGGCCAGGTTACCCAGAAAAGCTGTTTCAGTTCATTGCTTCCAAGGCTCCAGCCCACGACCTTGCTTGGGACGTCGGCACCGGTACTGGCCAGGCTGCCCGATCCCTGGCTGAGATCTACAAGAATGTGGTGGCCACAGACACAAGCCAAACGCAACTCGAATGCGCTCCAAAACTCCCCAATGTTCGCTACGTGCACACTTCTGCAGTGCTGACCATACCCGAAATTGAACAAAAAGTACTGGCTCCAAAATCTAGTGTTGATTTAGTGACCATTGCACAAGCCCTGCATTGGTTTGACCTCCCAAGTTTCTATGAACAAGTGAAATGGGTGCTCAAGAAACCAAACGGGGTCATTGCTGCATGGTGCTACACTCTGCCTAGAATTAACAACAATGTAGACACTCTCTTCGGTCGGTTCTATTCCATTGATGTCGAACCCTACTGGGAACCGCCGCGTAAATTAGTGGACAACAAGTACAGCACCATCGATTTTCCGTTTGAGCCGGTTAGCGGAGAGGGAAGTACTGGACCGTTCGAGTTTGCAGCGGAGACATTGATGGGTTTGGATGATTTTTTCACGTATCTAAGGTCGTGGTCAGGTTATCAGACTGCTAAGGACAAGGGTGTTGAGCTTCTGAATGAGGATGTGATGGAACAATTTAAGCAAGCCTGGAATGTTGATGGTGGAGATGGACAGAAGGTTGTAAACTATACTATCTATTTAAGAATTGGAAGAGTGGGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

265

Amino Acids

29.72

Weight (kDa)

5.33

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 134	1.2e-10	Methyltransferase domain
Methyltransf_25	PF13649	39 - 129	5.8e-09	Methyltransferase domain
Methyltransf_12	PF08242	39 - 133	4.2e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41380
fragaria_vesca	FvH4_3g01760 FvH4_3g01780
malus_domestica	MD14G1084000.v1.1
prunus_persica	Prupe.7G045000_v2.0.a1
pyrus_communis	pycom14g07380 pycom14g07470
rosa_chinensis	RchiOBHm_Chr5g0002601 RchiOBHm_Chr5g0063371 RchiOBHm_Chr6g0309701
rosa_laevigata	RLG00000031046 RLG00000035630
rosa_multiflora	Rmu_sc0006795.1_g000004 Rmu_sc0009084.1_g000008 Rmu_sc0011295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017330 Rroxscaffold_1G00073250
rosa_rugosa	Rorug04G0397600 Rorug04G0397600 Rorug05G0356800 Rorug05G0356900
rosa_samantha	Rh5AG021100 Rh5AG416200 Rh5BG023800 Rh5CG023200 Rh5CG454600 Rh5DG022200 Rh5DG444800 Rh6AG487400
rosa_wichuraiana	Rw5G001950 Rw5G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	2 cut(s)	38, 502
AciI	CCGC	6 cut(s)	5, 38, 497, 500, 558, 593
AclWI	GGATC	2 cut(s)	15, 141
AcoI	YGGCCR	3 cut(s)	47, 133, 177
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	5 cut(s)	35, 130, 285, 524, 571
AfiI	CCNNNNNNNGG	4 cut(s)	112, 151, 336, 557
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	4 cut(s)	49, 135, 150, 716
AluBI	AGCT	2 cut(s)	67, 679
AluI	AGCT	2 cut(s)	67, 679
Alw21I	GWGCWC	2 cut(s)	243, 381
Alw26I	GTCTC	1 cut(s)	590
Alw44I	GTGCAC	1 cut(s)	239
AlwI	GGATC	2 cut(s)	15, 141
AoxI	GGCC	3 cut(s)	47, 133, 177
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	3 cut(s)	140, 404, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AsiGI	ACCGGT	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	575
AvaII	GGWCC	1 cut(s)	575
BaeGI	GKGCMC	1 cut(s)	243
BalI	TGGCCA	2 cut(s)	135, 179
BanI	GGYRCC	1 cut(s)	122
Bbv12I	GWGCWC	2 cut(s)	243, 381
BbvI	GCAGC	3 cut(s)	127, 391, 602
BccI	CCATC	5 cut(s)	539, 598, 691, 722, 731
BciT130I	CCWGG	4 cut(s)	51, 137, 152, 718
BcoDI	GTCTC	1 cut(s)	590
BfaI	CTAG	2 cut(s)	300, 426
BfmI	CTRYAG	1 cut(s)	249
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	4 cut(s)	141, 405, 500, 591
BlsI	GCNGC	4 cut(s)	142, 406, 501, 592
BmcAI	AGTACT	2 cut(s)	285, 571
Bme1390I	CCNGG	4 cut(s)	51, 137, 152, 718
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	4 cut(s)	93, 124, 291, 495
BmrFI	CCNGG	4 cut(s)	51, 137, 152, 718
BmrI	ACTGGG	1 cut(s)	499
BmuI	ACTGGG	1 cut(s)	499
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	365
Bsa29I	ATCGAT	1 cut(s)	534
BsaAI	YACGTR	2 cut(s)	238, 627
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	87, 150
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 151, 336, 557
Bse118I	RCCGGY	2 cut(s)	125, 550
Bse1I	ACTGG	4 cut(s)	136, 291, 494, 577
Bse3DI	GCAATG	3 cut(s)	78, 318, 399
BseBI	CCWGG	4 cut(s)	51, 137, 152, 718
BseCI	ATCGAT	1 cut(s)	534
BseDI	CCNNGG	2 cut(s)	87, 150
BseGI	GGATG	2 cut(s)	619, 697
BseLI	CCNNNNNNNGG	4 cut(s)	112, 151, 336, 557
BseMI	GCAATG	3 cut(s)	78, 318, 399
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	4 cut(s)	136, 291, 494, 577
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	3 cut(s)	127, 391, 602
Bsh1236I	CGCG	2 cut(s)	38, 502
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	3 cut(s)	49, 135, 179
BshNI	GGYRCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	534
BsiEI	CGRYCG	1 cut(s)	460
BsiHKAI	GWGCWC	2 cut(s)	243, 381
BsiSI	CCGG	2 cut(s)	126, 551
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	4 cut(s)	112, 151, 336, 557
BsmAI	GTCTC	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	49, 135, 179
Bsp1286I	GDGCHC	2 cut(s)	243, 381
Bsp143I	GATC	3 cut(s)	7, 146, 159
BspACI	CCGC	6 cut(s)	5, 38, 497, 500, 558, 593
BspANI	GGCC	3 cut(s)	49, 135, 179
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	534
BspFNI	CGCG	2 cut(s)	38, 502
BspLI	GGNNCC	4 cut(s)	93, 124, 291, 495
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	2 cut(s)	15, 141
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	3 cut(s)	78, 318, 399
BsrFI	RCCGGY	2 cut(s)	125, 550
BsrI	ACTGG	4 cut(s)	136, 291, 494, 577
BssAI	RCCGGY	2 cut(s)	125, 550
BssECI	CCNNGG	2 cut(s)	87, 150
BssMI	GATC	3 cut(s)	7, 146, 159
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	4 cut(s)	51, 137, 152, 718
Bst4CI	ACNGT	1 cut(s)	579
Bst6I	CTCTTC	2 cut(s)	458, 775
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	2 cut(s)	238, 627
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	3 cut(s)	156, 632, 660
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	619, 697
BstFNI	CGCG	2 cut(s)	38, 502
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	3 cut(s)	10, 149, 162
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	3 cut(s)	7, 146, 159
BstMCI	CGRYCG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	4 cut(s)	51, 137, 152, 718
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	4 cut(s)	49, 135, 150, 716
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	2 cut(s)	38, 502
BstV1I	GCAGC	3 cut(s)	127, 391, 602
BstX2I	RGATCY	2 cut(s)	7, 159
BstYI	RGATCY	2 cut(s)	7, 159
Bsu15I	ATCGAT	1 cut(s)	534
BsuRI	GGCC	3 cut(s)	49, 135, 179
BsuTUI	ATCGAT	1 cut(s)	534
BtsCI	GGATG	2 cut(s)	619, 697
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	714
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	2 cut(s)	125, 550
Cfr13I	GGNCC	1 cut(s)	575
ClaI	ATCGAT	1 cut(s)	534
Csp6I	GTAC	5 cut(s)	34, 129, 284, 523, 570
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	1 cut(s)	408
CviQI	GTAC	5 cut(s)	34, 129, 284, 523, 570
DdeI	CTNAG	3 cut(s)	156, 632, 660
DpnI	GATC	3 cut(s)	9, 148, 161
DpnII	GATC	3 cut(s)	7, 146, 159
EaeI	YGGCCR	3 cut(s)	47, 133, 177
Eam1104I	CTCTTC	2 cut(s)	458, 775
EarI	CTCTTC	2 cut(s)	458, 775
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	575
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRII	CCWGG	4 cut(s)	49, 135, 150, 716
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	411
FaiI	YATR	4 cut(s)	263, 360, 409, 759
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	407
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	141, 405, 500, 591
FokI	GGATG	2 cut(s)	626, 704
Fsp4HI	GCNGC	4 cut(s)	141, 405, 500, 591
FspBI	CTAG	2 cut(s)	300, 426
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	4 cut(s)	141, 405, 500, 591
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	3 cut(s)	49, 135, 179
HapII	CCGG	2 cut(s)	126, 551
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	411
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HpaII	CCGG	2 cut(s)	126, 551
Hpy166II	GTNNAC	4 cut(s)	241, 445, 514, 754
Hpy188I	TCNGA	2 cut(s)	654, 684
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	4 cut(s)	241, 445, 514, 754
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	739
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4IV	ACGT	3 cut(s)	117, 237, 626
HpyCH4V	TGCA	6 cut(s)	241, 251, 323, 334, 407, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	3 cut(s)	156, 632, 660
HpySE526I	ACGT	3 cut(s)	117, 237, 626
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	411
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	7, 146, 159
LmnI	GCTCC	3 cut(s)	97, 217, 295
Lsp1109I	GCAGC	3 cut(s)	127, 391, 602
MaeI	CTAG	2 cut(s)	300, 426
MaeII	ACGT	3 cut(s)	117, 237, 626
MaeIII	GTNAC	2 cut(s)	53, 313
MalI	GATC	3 cut(s)	9, 148, 161
MboI	GATC	3 cut(s)	7, 146, 159
MboII	GAAGA	2 cut(s)	445, 792
MflI	RGATCY	2 cut(s)	7, 159
MhlI	GDGCHC	2 cut(s)	243, 381
MlsI	TGGCCA	2 cut(s)	135, 179
MluCI	AATT	6 cut(s)	270, 429, 506, 704, 774, 790
MluNI	TGGCCA	2 cut(s)	135, 179
MnlI	CCTC	4 cut(s)	26, 356, 556, 682
Mox20I	TGGCCA	2 cut(s)	135, 179
MscI	TGGCCA	2 cut(s)	135, 179
MseI	TTAA	3 cut(s)	432, 708, 770
Msp20I	TGGCCA	2 cut(s)	135, 179
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	2 cut(s)	126, 551
MspR9I	CCNGG	4 cut(s)	51, 137, 152, 718
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	4 cut(s)	51, 137, 152, 718
MvnI	CGCG	2 cut(s)	38, 502
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	3 cut(s)	7, 146, 159
NlaIII	CATG	1 cut(s)	411
NlaIV	GGNNCC	4 cut(s)	93, 124, 291, 495
NmuCI	GTSAC	1 cut(s)	313
PctI	GAATGC	1 cut(s)	212
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	4 cut(s)	142, 406, 501, 592
Ppu21I	YACGTR	2 cut(s)	238, 627
Psp6I	CCWGG	4 cut(s)	49, 135, 150, 716
PspEI	GGTNACC	1 cut(s)	53
PspGI	CCWGG	4 cut(s)	49, 135, 150, 716
PspN4I	GGNNCC	4 cut(s)	93, 124, 291, 495
PspPI	GGNCC	1 cut(s)	575
PsrI	GAACNNNNNNTAC	2 cut(s)	267, 299
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	7, 159
RsaI	GTAC	5 cut(s)	35, 130, 285, 524, 571
RsaNI	GTAC	5 cut(s)	34, 129, 284, 523, 570
SaqAI	TTAA	3 cut(s)	432, 708, 770
SatI	GCNGC	4 cut(s)	141, 405, 500, 591
Sau3AI	GATC	3 cut(s)	7, 146, 159
Sau96I	GGNCC	1 cut(s)	575
ScaI	AGTACT	2 cut(s)	285, 571
ScrFI	CCNGG	4 cut(s)	51, 137, 152, 718
SduI	GDGCHC	2 cut(s)	243, 381
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	6 cut(s)	270, 429, 506, 704, 774, 790
SsiI	CCGC	6 cut(s)	5, 38, 497, 500, 558, 593
SspMI	CTAG	2 cut(s)	300, 426
StyD4I	CCNGG	4 cut(s)	49, 135, 150, 716
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	579
TaiI	ACGT	3 cut(s)	120, 240, 629
TaqI	TCGA	4 cut(s)	204, 480, 534, 582
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	6 cut(s)	270, 429, 506, 704, 774, 790
TatI	WGTACW	3 cut(s)	283, 522, 569
TauI	GCSGC	1 cut(s)	502
Tru1I	TTAA	3 cut(s)	432, 708, 770
Tru9I	TTAA	3 cut(s)	432, 708, 770
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	3 cut(s)	140, 404, 590
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	67, 375
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	1 cut(s)	258
VneI	GTGCAC	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	575
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	2 cut(s)	300, 426
ZraI	GACGTC	1 cut(s)	118
ZrmI	AGTACT	2 cut(s)	285, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.