Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011295.1

Orthogroup ID

OG0004800

Physical Location & Seq

Genomic Coordinates Reverse (-)

181 .. 1697

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011295.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atggcggatctgttcatcaaacaatcaaagcagtacgctgtggctcggccaggttactcagaaaagctgcttcagttcattgcttccaaggctgccgcccacgaccttgcatgggacgtcggcaccggtagtggccaggctgcccgatccctagctgagatcttctataatgtggtggcaacagacacaagccaaaagcaacttgaatgcgctccaaaactccccaatgttcgctatgagcacactcctccggtcctgaccatacctgaaattgaacgaaaattggcctcaaaatctagtgttgatttagtgaccattgcacaagccctgcattggtttgacctcccaagtttctacgagcaagtgaaatgggtgctgaagaaaccccatggggtcattgctgcatggtgctacactgtgcctagagttaacaacaatgtagacaccgtcttcgatcggttctattccattgatgtcgaaccctactgggatcgggcacgtaaattagtggacaacaggtacagcaccattgattttccgtttgagccggttaggggagaaggcagtacaggaccgtttgagtttgtgacggagagattgatggatttggatgattttttcacgtacataaggtcgtggtcagcatatcagacggctaaggacaagggtgttgagcttctgagtgacgatgtgatggaggaatttaagcaagcttggaatgctggtggcggagatgaacagaaggctgtgaactatcctgtctatttaagagtcggaagagtcgggaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

263

Amino Acids

29.91

Weight (kDa)

5.49

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41380
fragaria_vesca	FvH4_3g01760 FvH4_3g01780
malus_domestica	MD14G1084000.v1.1
prunus_persica	Prupe.7G045000_v2.0.a1
pyrus_communis	pycom14g07380 pycom14g07470
rosa_chinensis	RchiOBHm_Chr5g0002601 RchiOBHm_Chr5g0063371 RchiOBHm_Chr6g0309701
rosa_laevigata	RLG00000031046 RLG00000035630
rosa_multiflora	Rmu_sc0006795.1_g000004 Rmu_sc0009084.1_g000008 Rmu_sc0011295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017330 Rroxscaffold_1G00073250
rosa_rugosa	Rorug04G0397600 Rorug04G0397600 Rorug05G0356800 Rorug05G0356900
rosa_samantha	Rh5AG021100 Rh5AG416200 Rh5BG023800 Rh5CG023200 Rh5CG454600 Rh5DG022200 Rh5DG444800 Rh6AG487400
rosa_wichuraiana	Rw5G001950 Rw5G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	3 cut(s)	5, 96, 729
AclWI	GGATC	3 cut(s)	15, 141, 498
AcoI	YGGCCR	2 cut(s)	47, 133
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	2 cut(s)	56, 398
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	4 cut(s)	35, 521, 568, 626
AfiI	CCNNNNNNNGG	3 cut(s)	112, 333, 554
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	206, 275
AjnI	CCWGG	2 cut(s)	49, 135
AluBI	AGCT	4 cut(s)	67, 155, 676, 713
AluI	AGCT	4 cut(s)	67, 155, 676, 713
Alw21I	GWGCWC	1 cut(s)	243
AlwI	GGATC	3 cut(s)	15, 141, 498
AoxI	GGCC	3 cut(s)	47, 133, 285
ApeKI	GCWGC	4 cut(s)	67, 92, 140, 401
ApoI	RAATTY	1 cut(s)	701
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AsiGI	ACCGGT	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	253, 572
AvaII	GGWCC	2 cut(s)	253, 572
BaeGI	GKGCMC	1 cut(s)	499
BalI	TGGCCA	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	442
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	4 cut(s)	54, 79, 127, 388
BccI	CCATC	2 cut(s)	595, 688
BceAI	ACGGC	1 cut(s)	669
BciT130I	CCWGG	2 cut(s)	51, 137
BfaI	CTAG	3 cut(s)	152, 297, 423
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	5 cut(s)	68, 93, 96, 141, 402
BlsI	GCNGC	5 cut(s)	69, 94, 97, 142, 403
Bme1390I	CCNGG	2 cut(s)	51, 137
Bme18I	GGWCC	2 cut(s)	253, 572
BmgT120I	GGNCC	2 cut(s)	253, 572
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	51, 137
BmrI	ACTGGG	1 cut(s)	496
BmuI	ACTGGG	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	442
Bpu10I	CCTNAGC	1 cut(s)	657
BsaAI	YACGTR	2 cut(s)	500, 624
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	87, 388
BsaWI	WCCGGW	2 cut(s)	125, 250
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 333, 554
Bse118I	RCCGGY	2 cut(s)	125, 547
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	3 cut(s)	78, 315, 396
BseBI	CCWGG	2 cut(s)	51, 137
BseDI	CCNNGG	2 cut(s)	87, 388
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	3 cut(s)	112, 333, 554
BseMI	GCAATG	3 cut(s)	78, 315, 396
BseMII	CTCAG	3 cut(s)	72, 147, 671
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	4 cut(s)	54, 79, 127, 388
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	3 cut(s)	49, 135, 287
BshNI	GGYRCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	3 cut(s)	126, 251, 548
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	3 cut(s)	112, 333, 554
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	2 cut(s)	212, 724
BsnI	GGCC	3 cut(s)	49, 135, 287
Bsp1286I	GDGCHC	2 cut(s)	243, 499
Bsp143I	GATC	5 cut(s)	7, 146, 159, 454, 490
Bsp19I	CCATGG	1 cut(s)	388
BspACI	CCGC	3 cut(s)	5, 96, 729
BspANI	GGCC	3 cut(s)	49, 135, 287
BspCNI	CTCAG	3 cut(s)	71, 148, 672
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	3 cut(s)	15, 141, 498
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	3 cut(s)	78, 315, 396
BsrFI	RCCGGY	2 cut(s)	125, 547
BsrI	ACTGG	1 cut(s)	491
BssAI	RCCGGY	2 cut(s)	125, 547
BssECI	CCNNGG	2 cut(s)	87, 388
BssMI	GATC	5 cut(s)	7, 146, 159, 454, 490
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	87, 388
Bst2UI	CCWGG	2 cut(s)	51, 137
Bst4CI	ACNGT	3 cut(s)	418, 448, 576
Bst6I	CTCTTC	1 cut(s)	772
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	2 cut(s)	500, 624
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	4 cut(s)	58, 156, 657, 680
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	1 cut(s)	616
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	5 cut(s)	10, 149, 162, 457, 493
BstMBI	GATC	5 cut(s)	7, 146, 159, 454, 490
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 719
BstNI	CCWGG	2 cut(s)	51, 137
BstSCI	CCNGG	2 cut(s)	49, 135
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	4 cut(s)	54, 79, 127, 388
BstV2I	GAAGAC	1 cut(s)	442
BstX2I	RGATCY	2 cut(s)	7, 159
BstYI	RGATCY	2 cut(s)	7, 159
BsuRI	GGCC	3 cut(s)	49, 135, 287
BtgI	CCRYGG	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	711
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	2 cut(s)	125, 547
Cfr13I	GGNCC	2 cut(s)	253, 572
Csp6I	GTAC	4 cut(s)	34, 520, 567, 625
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	3 cut(s)	111, 389, 405
CviQI	GTAC	4 cut(s)	34, 520, 567, 625
DdeI	CTNAG	4 cut(s)	58, 156, 657, 680
DpnI	GATC	5 cut(s)	9, 148, 161, 456, 492
DpnII	GATC	5 cut(s)	7, 146, 159, 454, 490
EaeI	YGGCCR	2 cut(s)	47, 133
Eam1104I	CTCTTC	1 cut(s)	772
EarI	CTCTTC	1 cut(s)	772
EciI	GGCGGA	2 cut(s)	20, 744
Eco130I	CCWWGG	2 cut(s)	87, 388
Eco47I	GGWCC	2 cut(s)	253, 572
Eco57I	CTGAAG	2 cut(s)	56, 398
EcoRII	CCWGG	2 cut(s)	49, 135
EcoT14I	CCWWGG	2 cut(s)	87, 388
ErhI	CCWWGG	2 cut(s)	87, 388
FaeI	CATG	3 cut(s)	114, 392, 408
FaiI	YATR	8 cut(s)	112, 168, 237, 263, 390, 406, 629, 646
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	110, 388, 404
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	5 cut(s)	68, 93, 96, 141, 402
FokI	GGATG	1 cut(s)	623
Fsp4HI	GCNGC	5 cut(s)	68, 93, 96, 141, 402
FspBI	CTAG	3 cut(s)	152, 297, 423
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	5 cut(s)	68, 93, 96, 141, 402
HaeIII	GGCC	3 cut(s)	49, 135, 287
HapII	CCGG	3 cut(s)	126, 251, 548
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	114, 392, 408
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	2 cut(s)	771, 780
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	3 cut(s)	126, 251, 548
Hpy166II	GTNNAC	4 cut(s)	430, 442, 511, 751
Hpy188I	TCNGA	4 cut(s)	61, 651, 681, 776
Hpy188III	TCNNGA	2 cut(s)	256, 784
Hpy8I	GTNNAC	4 cut(s)	430, 442, 511, 751
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	554, 736
HpyCH4III	ACNGT	3 cut(s)	418, 448, 576
HpyCH4IV	ACGT	3 cut(s)	117, 499, 623
HpyCH4V	TGCA	4 cut(s)	110, 320, 331, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 719
HpyF3I	CTNAG	4 cut(s)	58, 156, 657, 680
HpySE526I	ACGT	3 cut(s)	117, 499, 623
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	114, 392, 408
HspAI	GCGC	1 cut(s)	210
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	7, 146, 159, 454, 490
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	4 cut(s)	54, 79, 127, 388
MaeI	CTAG	3 cut(s)	152, 297, 423
MaeII	ACGT	3 cut(s)	117, 499, 623
MaeIII	GTNAC	4 cut(s)	53, 310, 586, 683
MalI	GATC	5 cut(s)	9, 148, 161, 456, 492
MboI	GATC	5 cut(s)	7, 146, 159, 454, 490
MboII	GAAGA	4 cut(s)	154, 391, 442, 789
MflI	RGATCY	2 cut(s)	7, 159
MhlI	GDGCHC	2 cut(s)	243, 499
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	5 cut(s)	270, 281, 503, 701, 787
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	780, 789
MmeI	TCCRAC	1 cut(s)	754
MnlI	CCTC	4 cut(s)	258, 298, 353, 691
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	3 cut(s)	429, 705, 767
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	3 cut(s)	126, 251, 548
MspR9I	CCNGG	2 cut(s)	51, 137
Mva1269I	GAATGC	2 cut(s)	212, 724
MvaI	CCWGG	2 cut(s)	51, 137
MwoI	GCNNNNNNNGC	2 cut(s)	89, 719
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	5 cut(s)	7, 146, 159, 454, 490
NlaIII	CATG	3 cut(s)	114, 392, 408
NlaIV	GGNNCC	1 cut(s)	124
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	3 cut(s)	310, 586, 683
PctI	GAATGC	2 cut(s)	212, 724
PflFI	GACNNNGTC	1 cut(s)	446
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	5 cut(s)	69, 94, 97, 142, 403
Ple19I	CGATCG	1 cut(s)	457
PleI	GAGTC	2 cut(s)	779, 788
PpsI	GAGTC	2 cut(s)	779, 788
Ppu21I	YACGTR	2 cut(s)	500, 624
Psp6I	CCWGG	2 cut(s)	49, 135
PspGI	CCWGG	2 cut(s)	49, 135
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	253, 572
PsuI	RGATCY	2 cut(s)	7, 159
PsyI	GACNNNGTC	1 cut(s)	446
PvuI	CGATCG	1 cut(s)	457
RsaI	GTAC	4 cut(s)	35, 521, 568, 626
RsaNI	GTAC	4 cut(s)	34, 520, 567, 625
SaqAI	TTAA	3 cut(s)	429, 705, 767
SatI	GCNGC	5 cut(s)	68, 93, 96, 141, 402
Sau3AI	GATC	5 cut(s)	7, 146, 159, 454, 490
Sau96I	GGNCC	2 cut(s)	253, 572
SchI	GAGTC	2 cut(s)	780, 789
ScrFI	CCNGG	2 cut(s)	51, 137
SduI	GDGCHC	2 cut(s)	243, 499
SinI	GGWCC	2 cut(s)	253, 572
Sse9I	AATT	5 cut(s)	270, 281, 503, 701, 787
SsiI	CCGC	3 cut(s)	5, 96, 729
SspMI	CTAG	3 cut(s)	152, 297, 423
StyD4I	CCNGG	2 cut(s)	49, 135
StyI	CCWWGG	2 cut(s)	87, 388
TaaI	ACNGT	3 cut(s)	418, 448, 576
TaiI	ACGT	3 cut(s)	120, 502, 626
TaqI	TCGA	2 cut(s)	453, 477
TasI	AATT	5 cut(s)	270, 281, 503, 701, 787
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	1 cut(s)	98
Tru1I	TTAA	3 cut(s)	429, 705, 767
Tru9I	TTAA	3 cut(s)	429, 705, 767
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	3 cut(s)	310, 586, 683
TseI	GCWGC	4 cut(s)	67, 92, 140, 401
Tsp45I	GTSAC	3 cut(s)	310, 586, 683
TspDTI	ATGAA	3 cut(s)	4, 67, 750
TspGWI	ACGGA	2 cut(s)	528, 605
TspRI	CASTG	1 cut(s)	421
Tth111I	GACNNNGTC	1 cut(s)	446
VpaK11BI	GGWCC	2 cut(s)	253, 572
XapI	RAATTY	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	3 cut(s)	152, 297, 423
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.