Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007357

Physical Location & Seq

Genomic Coordinates Reverse (-)

17344637 .. 17346940

Gene Structure 2304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41600.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGGAAGTTGAATCCGCTTCTGAAACGAGGCTTGAAGGCTATTGAAAATGGTGATTTGTTGAAGATCCTCCAAAGTGAAATTCGTCACGAAATCTCCCATCCTCGTTTCCAGGGCGTTGAGACCGGTTCTCTAGGAGATTTCAAATTGGATTGGGATTCACCGGAAAGCCAAGATATTGTTCTGAAGAGACAGTTTGATTCAGGCGAGAAGGTTGTGGTCTCTGCTTTATTGCAACCAGAACCTATAGAACTAGAAGATGATTTAGTGTTTCCTAGGGAAGCTCATGCCAAAGTTTGTATCAAAAAGCCTGGTCTCAGCTCTATCTTGCAGTTTCATTGCCGGGTTTACGAATCAGGATCTGGATCTTCTCATTTCGACATCGAGAGCGCCTACTTTATCCGCTCTTTTGTTTCTGCTCCTTCTTCCACTTATGGAGACCATTTTTTCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0008494 GO:0009060 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015980 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045333 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0080090 GO:0090079 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

151

Amino Acids

17.09

Weight (kDa)

6.06

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAM33	PF02330	48 - 222	4.1e-13	Mitochondrial glycoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600
fragaria_vesca	FvH4_6g24410
malus_domestica	MD14G1076800.v1.1 MD14G1125800.v1.1
prunus_persica	Prupe.7G054700_v2.0.a1 Prupe.7G054700_v2.0.a1
pyrus_communis	pycom14g06510
rosa_chinensis	RchiOBHm_Chr3g0483391
rosa_laevigata	RLG00000023287
rosa_multiflora	Rmu_sc0006349.1_g000008 Rmu_sc0009753.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398390
rosa_rugosa	Rorug03G0205700
rosa_samantha	Rh3AG254100 Rh3BG291200 Rh3CG288400 Rh3DG284200
rosa_wichuraiana	Rw0G023720 Rw0G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	405
AciI	CCGC	2 cut(s)	17, 403
AclWI	GGATC	3 cut(s)	61, 367, 373
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	206
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	5 cut(s)	13, 37, 47, 64, 145
AjnI	CCWGG	2 cut(s)	111, 310
AjuI	GAANNNNNNNTTGG	4 cut(s)	66, 98, 165, 197
AluBI	AGCT	2 cut(s)	284, 321
AluI	AGCT	2 cut(s)	284, 321
Alw26I	GTCTC	5 cut(s)	116, 184, 226, 320, 432
AlwI	GGATC	3 cut(s)	61, 367, 373
AlwNI	CAGNNNCTG	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	81
AsiGI	ACCGGT	1 cut(s)	125
AspA2I	CCTAGG	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	65, 153
AvrII	CCTAGG	1 cut(s)	275
BccI	CCATC	1 cut(s)	108
BciT130I	CCWGG	2 cut(s)	113, 312
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	5 cut(s)	116, 184, 226, 320, 432
BfaI	CTAG	3 cut(s)	134, 254, 276
BfmI	CTRYAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	393
BlnI	CCTAGG	1 cut(s)	275
Bme1390I	CCNGG	3 cut(s)	113, 312, 344
BmrFI	CCNGG	3 cut(s)	113, 312, 344
BpuMI	CCSGG	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	364
BsaI	GGTCTC	4 cut(s)	116, 226, 320, 432
BsaJI	CCNNGG	2 cut(s)	112, 275
BsaWI	WCCGGW	2 cut(s)	125, 163
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse118I	RCCGGY	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	364
BseBI	CCWGG	2 cut(s)	113, 312
BseDI	CCNNGG	2 cut(s)	112, 275
BseGI	GGATG	1 cut(s)	100
BseJI	GATNNNNATC	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	331
BshTI	ACCGGT	1 cut(s)	125
BsiSI	CCGG	3 cut(s)	126, 164, 343
BsmAI	GTCTC	5 cut(s)	116, 184, 226, 320, 432
Bso31I	GGTCTC	4 cut(s)	116, 226, 320, 432
Bsp143I	GATC	3 cut(s)	66, 359, 365
BspACI	CCGC	2 cut(s)	17, 403
BspCNI	CTCAG	1 cut(s)	330
BspPI	GGATC	3 cut(s)	61, 367, 373
BspTNI	GGTCTC	4 cut(s)	116, 226, 320, 432
BsrBI	CCGCTC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	112, 275
BssMI	GATC	3 cut(s)	66, 359, 365
BssT1I	CCWWGG	1 cut(s)	275
Bst2UI	CCWGG	2 cut(s)	113, 312
Bst4CI	ACNGT	1 cut(s)	195
Bst6I	CTCTTC	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	3 cut(s)	69, 362, 368
BstMAI	GTCTC	5 cut(s)	116, 184, 226, 320, 432
BstMBI	GATC	3 cut(s)	66, 359, 365
BstNI	CCWGG	2 cut(s)	113, 312
BstSCI	CCNGG	3 cut(s)	111, 310, 342
BstSFI	CTRYAG	1 cut(s)	246
BstX2I	RGATCY	3 cut(s)	66, 359, 365
BstYI	RGATCY	3 cut(s)	66, 359, 365
BtsCI	GGATG	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	1 cut(s)	392
Cfr10I	RCCGGY	1 cut(s)	125
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	6 cut(s)	33, 41, 171, 284, 310, 321
CviKI_1	RGCY	6 cut(s)	33, 41, 171, 284, 310, 321
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	3 cut(s)	68, 361, 367
DpnII	GATC	3 cut(s)	66, 359, 365
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	275
Eco31I	GGTCTC	4 cut(s)	116, 226, 320, 432
Eco57I	CTGAAG	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	111, 310
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	1 cut(s)	290
FaiI	YATR	3 cut(s)	248, 288, 435
FatI	CATG	1 cut(s)	286
FokI	GGATG	1 cut(s)	87
FspBI	CTAG	3 cut(s)	134, 254, 276
GlaI	GCGC	1 cut(s)	391
HaeII	RGCGCY	1 cut(s)	393
HapII	CCGG	3 cut(s)	126, 164, 343
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HinfI	GANTC	4 cut(s)	13, 158, 200, 353
HpaII	CCGG	3 cut(s)	126, 164, 343
HphI	GGTGA	2 cut(s)	65, 153
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	2 cut(s)	24, 186
Hpy188III	TCNNGA	4 cut(s)	89, 357, 363, 385
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	3 cut(s)	31, 205, 432
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	235, 331
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	66, 359, 365
LmnI	GCTCC	1 cut(s)	424
MaeI	CTAG	3 cut(s)	134, 254, 276
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	3 cut(s)	68, 361, 367
MbiI	CCGCTC	1 cut(s)	405
MboI	GATC	3 cut(s)	66, 359, 365
MboII	GAAGA	5 cut(s)	76, 199, 269, 360, 417
MflI	RGATCY	3 cut(s)	66, 359, 365
MluCI	AATT	2 cut(s)	81, 146
MnlI	CCTC	3 cut(s)	23, 80, 114
MspI	CCGG	3 cut(s)	126, 164, 343
MspR9I	CCNGG	3 cut(s)	113, 312, 344
MvaI	CCWGG	2 cut(s)	113, 312
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	3 cut(s)	66, 359, 365
NlaIII	CATG	1 cut(s)	290
NmuCI	GTSAC	1 cut(s)	86
PfeI	GAWTC	4 cut(s)	13, 158, 200, 353
PinAI	ACCGGT	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	111, 310
PspGI	CCWGG	2 cut(s)	111, 310
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	3 cut(s)	66, 359, 365
Sau3AI	GATC	3 cut(s)	66, 359, 365
ScrFI	CCNGG	3 cut(s)	113, 312, 344
SetI	ASST	5 cut(s)	216, 247, 286, 323, 455
SfcI	CTRYAG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	81, 146
SsiI	CCGC	2 cut(s)	17, 403
SspMI	CTAG	3 cut(s)	134, 254, 276
StyD4I	CCNGG	3 cut(s)	111, 310, 342
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	378, 384
TasI	AATT	2 cut(s)	81, 146
TfiI	GAWTC	4 cut(s)	13, 158, 200, 353
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	326
XapI	RAATTY	1 cut(s)	81
XmaJI	CCTAGG	1 cut(s)	275
XspI	CTAG	3 cut(s)	134, 254, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.